View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5704_low_22 (Length: 223)

Name: NF5704_low_22
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5704_low_22
NF5704_low_22
[»] chr5 (15 HSPs)
chr5 (1-210)||(29416663-29416872)
chr5 (1-177)||(24655509-24655685)
chr5 (5-188)||(28019149-28019332)
chr5 (3-144)||(16486686-16486827)
chr5 (5-173)||(42840413-42840581)
chr5 (5-185)||(42777786-42777969)
chr5 (4-118)||(39724526-39724640)
chr5 (5-142)||(42800714-42800851)
chr5 (5-90)||(37408337-37408422)
chr5 (5-76)||(41996220-41996291)
chr5 (5-84)||(42413994-42414073)
chr5 (8-84)||(42411826-42411902)
chr5 (10-54)||(40549282-40549326)
chr5 (95-187)||(42564857-42564949)
chr5 (9-77)||(43322804-43322872)
[»] chr8 (2 HSPs)
chr8 (5-68)||(15631867-15631930)
chr8 (5-68)||(15600584-15600647)
[»] chr4 (2 HSPs)
chr4 (22-184)||(1327280-1327442)
chr4 (22-184)||(44186127-44186289)
[»] chr1 (2 HSPs)
chr1 (18-64)||(19219195-19219241)
chr1 (18-64)||(19225452-19225498)
[»] chr6 (1 HSPs)
chr6 (9-187)||(29012844-29013022)
[»] scaffold0129 (1 HSPs)
scaffold0129 (9-86)||(33538-33615)
[»] chr2 (1 HSPs)
chr2 (9-58)||(44937812-44937861)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 29416872 - 29416663
Alignment:
Q  1 caggtacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccctttccttgccttgagtgtcctat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29416872 caggtacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccctttccttgccttgagtgtcctat 29416773  T
Q  101 cggagcaggaaagaagggagatatgttgttcataaagaaagacggcgaattagcttgggttgatttaaatacccaaataattgaggactcgggtgtcata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  29416772 cggagcaggaaagaagggagatatgttgttcataaagaaagacggcgaattagcttggattgatttaaatacccaaataattgaggactcgggtgttata 29416673  T
Q  201 gcagagagga 210  Q
     |||||||||    
T  29416672 acagagagga 29416663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 24655509 - 24655685
Alignment:
Q  1 caggtacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccctttccttgccttgagtgtcctat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24655509 caggtacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccctttccttgccttgagtatcctat 24655608  T
Q  101 cggagcaggaaagaagggagatatgttgttcataaagaaagacggcgaattagcttgggttgatttaaatacccaaa 177  Q
    |||||| ||||||||||| ||||||||||||   |||||||||||| |||| |||||| ||||||||||||||||||    
T  24655609 cggagctggaaagaagggcgatatgttgttccggaagaaagacggcaaattcgcttggtttgatttaaatacccaaa 24655685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 188
Target Start/End: Original strand, 28019149 - 28019332
Alignment:
Q  5 tacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccctttccttgccttgagtgtcctatcgga 104  Q
    |||| ||||||||||||| ||||| |||||  |||||||||||||||||||||| |||||  ||||||| || || ||||||||||||  ||| ||||||    
T  28019149 tacaattcacatttcaatcttgggtgaacttagtgtaaaggaatcatggactaaaatcttcgttgtaggaccattaccttgccttgagcatccaatcgga 28019248  T
Q  105 gcaggaaagaagggagatatgttgttcataaagaaagacggcgaattagcttgggttgatttaaatacccaaataattgaggac 188  Q
    || ||||||||||| ||||||||||||| |||||||||||||| | |||  ||| | || |||||||||||||| || ||||||    
T  28019249 gcgggaaagaagggtgatatgttgttcaaaaagaaagacggcggactagtctggttcgacttaaatacccaaatgatggaggac 28019332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 16486827 - 16486686
Alignment:
Q  3 ggtacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccctttccttgccttgagtgtcctatcg 102  Q
    ||||||||||||||||||||||| || ||| | ||||||||| ||||||||| ||||||||| ||| |||||||||| ||||  ||||||| |||||| |    
T  16486827 ggtacatttcacatttcaattttaggtgaatttggtgtaaagaaatcatggattaagatcttcattttagggcccttaccttatcttgagtatcctattg 16486728  T
Q  103 gagcaggaaagaagggagatatgttgttcataaagaaagacg 144  Q
    |||| ||||||||||| ||||||||||||| ||| |||||||    
T  16486727 gagccggaaagaagggtgatatgttgttcagaaaaaaagacg 16486686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 42840581 - 42840413
Alignment:
Q  5 tacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccctttccttgccttgagtgtcctatcgga 104  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||||||||||  |||||||||| || ||||| ||||||||||||| ||| || |||    
T  42840581 tacatttcacatttcaattttgggtgaacttggtgtaaaagaatcatggactaaagtctttattgttggtcccttaccttgccttgagtatccaattgga 42840482  T
Q  105 gcaggaaagaagggagatatgttgttcataaagaaagacggcgaattagcttgggttgatttaaatacc 173  Q
    ||||| ||||||||  |||| ||| | ||||| ||||||   ||| |||||||| ||||||||| ||||    
T  42840481 gcagggaagaagggcaatatattgattataaaaaaagacaatgaactagcttggtttgatttaagtacc 42840413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 42777786 - 42777969
Alignment:
Q  5 tacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccctttccttgccttgagtgtc---ctatc 101  Q
    ||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| || |||| ||    ||||    
T  42777786 tacatttcacatttcaattttaggcgaactcggtgtaaaagaatcatggactaagatcttcattgtagggcccttaccttgtctcgagtatcttattatc 42777885  T
Q  102 ggagcaggaaagaagggagatatgttgttcataaagaaagacggcgaattagcttgggttgatttaaatacccaaataattgag 185  Q
     |||||||||||||||| ||  ||||| ||  ||| |||||||  |||   |||||| | ||||||||||| ||||| ||||||    
T  42777886 cgagcaggaaagaagggtgaggtgttggtcgcaaaaaaagacgctgaacatgcttggttcgatttaaatactcaaatgattgag 42777969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 39724640 - 39724526
Alignment:
Q  4 gtacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccctttccttgccttgagtgtcctatcgg 103  Q
    ||||||||||||| ||||||||||| ||||||||| |||| ||||||||||||||  |||| ||||| || || || ||||||||||| | ||| |||||    
T  39724640 gtacatttcacatatcaattttgggggaactcggtataaaagaatcatggactaaactcttcattgttggacctttaccttgccttgattatccaatcgg 39724541  T
Q  104 agcaggaaagaaggg 118  Q
    ||| || ||||||||    
T  39724540 agcgggtaagaaggg 39724526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 42800851 - 42800714
Alignment:
Q  5 tacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccctttccttgccttgagtgtcctatcgga 104  Q
    |||||||||||||| |||||| |   |||||| ||||| ||||||||||||||| ||||| |  |||||||| || ||||||||||| | |||| |||||    
T  42800851 tacatttcacattttaattttagacaaactcgatgtaatggaatcatggactaaaatcttcaccgtagggcctttaccttgccttgactatcctgtcgga 42800752  T
Q  105 gcaggaaagaagggagatatgttgttcataaagaaaga 142  Q
    || ||||||||||| ||| |||| |||| ||| |||||    
T  42800751 gcgggaaagaagggtgatctgtttttcagaaaaaaaga 42800714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 37408422 - 37408337
Alignment:
Q  5 tacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccctttccttgccttg 90  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||| ||| | ||  |||| || ||||| ||||||||||    
T  37408422 tacatttcacatttcaattttgggtgagctcggtgtaaaggaatcatggacgaagctattcgttgttggacccttaccttgccttg 37408337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 41996291 - 41996220
Alignment:
Q  5 tacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggcc 76  Q
    |||||||||||||| ||||||||| ||||| | |||||||||||||||||||||| |||| ||||| |||||    
T  41996291 tacatttcacattttaattttgggtgaacttgatgtaaaggaatcatggactaagctcttcattgttgggcc 41996220  T

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Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 42413994 - 42414073
Alignment:
Q  5 tacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccctttcctt 84  Q
    |||| ||||||||||||||||||| ||| | ||||||||||| |||||||||||  |||||||||| || ||||| ||||    
T  42413994 tacaattcacatttcaattttgggcgaatttggtgtaaaggagtcatggactaaactctttattgttggacccttacctt 42414073  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 42411826 - 42411902
Alignment:
Q  8 atttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccctttcctt 84  Q
    |||||| |||||||||||||||||| | ||  |||| ||||||||||||||  |||| ||||| |||||||| ||||    
T  42411826 atttcatatttcaattttgggagaaattggaataaaagaatcatggactaaactcttcattgtcgggcccttacctt 42411902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 40549282 - 40549326
Alignment:
Q  10 ttcacatttcaattttgggagaactcggtgtaaaggaatcatgga 54  Q
    ||||||| ||||||||||| ||| ||||||| |||||||||||||    
T  40549282 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatgga 40549326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 187
Target Start/End: Complemental strand, 42564949 - 42564857
Alignment:
Q  95 tcctatcggagcaggaaagaagggagatatgttgttcataaagaaagacggcgaattagcttgggttgatttaaatacccaaataattgagga 187  Q
    |||||| ||||  |||||||||||||| || || || | ||| |||||||  ||| |||||||| |||||||||||||| | | |||||||||    
T  42564949 tcctattggagtgggaaagaagggagaaatattcttaagaaaaaaagacgatgaactagcttggattgatttaaataccaacacaattgagga 42564857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 43322804 - 43322872
Alignment:
Q  9 tttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccc 77  Q
    ||||| ||||| |||||||| ||||||||||||||| ||| |||||  ||  |||||||||| ||||||    
T  43322804 tttcatatttcgattttgggtgaactcggtgtaaagaaattatggatcaaactctttattgttgggccc 43322872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 15631930 - 15631867
Alignment:
Q  5 tacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttatt 68  Q
    ||||| |||||||||||||||||| |||| ||||||||  ||||||||||||||  ||||||||    
T  15631930 tacatatcacatttcaattttgggtgaacccggtgtaatagaatcatggactaaactctttatt 15631867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 15600647 - 15600584
Alignment:
Q  5 tacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttatt 68  Q
    ||||| |||||| ||||||||||| |||| ||||||||  ||||||||||||||  ||||||||    
T  15600647 tacatatcacatctcaattttgggtgaacccggtgtaatagaatcatggactaaactctttatt 15600584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 1327280 - 1327442
Alignment:
Q  22 ttttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccctttccttgccttgagtgtcctatcggagcaggaaagaagggaga 121  Q
    ||||||| ||||| ||||| |  ||||||||||||||  |||| ||||| || ||||| ||| || | ||| ||||||| ||||||||||| || || ||    
T  1327280 ttttgggcgaacttggtgttagagaatcatggactaaactcttcattgtcggacccttgcctggcgtggagcgtcctattggagcaggaaaaaaaggcga 1327379  T
Q  122 tatgttgttcataaagaaagacggcgaattagcttgggttgatttaaatacccaaataattga 184  Q
    ||| || ||  |||| || |||   ||| |||||||  |||||||||||||||||| ||||||    
T  1327380 tatattctttctaaaaaatgacaatgaagtagcttgttttgatttaaatacccaaacaattga 1327442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 44186127 - 44186289
Alignment:
Q  22 ttttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccctttccttgccttgagtgtcctatcggagcaggaaagaagggaga 121  Q
    ||||||||||| | ||||| |  ||||||||||||||  |||||||||| || ||||| ||| || | ||||||||| | |||| |||||| || |  ||    
T  44186127 ttttgggagaatttggtgttagagaatcatggactaaactctttattgtcggacccttgcctagcgtggagtgtcctgttggagaaggaaaaaaagttga 44186226  T
Q  122 tatgttgttcataaagaaagacggcgaattagcttgggttgatttaaatacccaaataattga 184  Q
    ||| || || ||||| || |||   ||| |||||||  ||||||||||||| |||| ||||||    
T  44186227 tatattctttataaaaaatgacaatgaaatagcttgttttgatttaaatactcaaacaattga 44186289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 19219241 - 19219195
Alignment:
Q  18 tcaattttgggagaactcggtgtaaaggaatcatggactaagatctt 64  Q
    ||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  19219241 tcaattttgggtgaactcggtgtcaaggaatcatggactaagctctt 19219195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 19225498 - 19225452
Alignment:
Q  18 tcaattttgggagaactcggtgtaaaggaatcatggactaagatctt 64  Q
    ||||||||||| || |||||||| |||||||||||||||||| ||||    
T  19225498 tcaattttgggtgagctcggtgtcaaggaatcatggactaagctctt 19225452  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 29012844 - 29013022
Alignment:
Q  9 tttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccctttccttgccttgagtgtcctatcggagcag 108  Q
    |||||||| ||||||||||| ||  ||||||| |||||||||||||| ||  |||| ||||| || || ||  ||||| || || ||||||||||||  |    
T  29012844 tttcacatatcaattttgggggatttcggtgtgaaggaatcatggaccaaactcttcattgttggaccgttgtcttgcgttaagcgtcctatcggagtgg 29012943  T
Q  109 gaaagaagggagatatgttgttcataaagaaagacggcgaattagcttgggttgatttaaatacccaaataattgagga 187  Q
    | | ||| ||||| || || ||||| |  ||||| |  ||| ||| |||| ||||||| | ||||||||| ||||||||    
T  29012944 ggacgaaaggagaaatattcttcatcagaaaagatgaagaactagtttggcttgatttgagtacccaaatgattgagga 29013022  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 33615 - 33538
Alignment:
Q  9 tttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaagatctttattgtagggccctttccttgc 86  Q
    ||||||||||| |||||||| ||||| ||||| ||||| || ||||||||  |||||||| | ||||| || ||||||    
T  33615 tttcacatttctattttgggtgaacttggtgtgaaggagtcttggactaaactctttattattgggcctttaccttgc 33538  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 44937861 - 44937812
Alignment:
Q  9 tttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaa 58  Q
    |||||||| ||||||||||| |||||||| || || ||||||||||||||    
T  44937861 tttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaa 44937812  T

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