View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5704_low_5 (Length: 456)
Name: NF5704_low_5
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5704_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 10342267 - 10341845
Alignment:
| Q |
19 |
atctggttcataaaccaaagtaccaaacatagaatcttttttgtttacttttgacaaatttcttgcttggttgaaacaagattaactgaatggtgatgat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10342267 |
atctggttcataaaccaaagtaccaaacatagaatcttttttgtttacttttgacaaatttcttgcttggttgaaacaagattaactgaatggtgatgat |
10342168 |
T |
|
| Q |
119 |
gccatgattcttaaggcagaagggtgaaattcttttggttgttagaatttgtaacattgatttgaaacaatgaattgtgtccaccgtaaataatggaatg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
10342167 |
gccatgattcttaaggcagaagggtgaaattcttttggttgttagaatttgtaacattgatttgaaacagtgaattgtgtccatcgtaaataatggaatg |
10342068 |
T |
|
| Q |
219 |
ttacaaaagcatatgccctatattgtaattaataaatttactaattatcattgttcagtgatatgctgcaaagtaagaaaagcacatagtcaaataacaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10342067 |
ttacaaaagcatatgccctatattgtaattaataaatttactaattatcattgttcagtgatatgctgcaaagtaagaaaagcacatagtcaaataacaa |
10341968 |
T |
|
| Q |
319 |
gattgaatcttagaaatacttcgacataaggtacagtggtggagatgggaaaattaaatttggtttaatattcaaatttctaactaaacaatggaaatga |
418 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10341967 |
gattgaatcttagaaatacttcgacacaagatacagtggtggagatgggaaaattaaatttggtttaatattcaaatttctaactaaacaatggaaatga |
10341868 |
T |
|
| Q |
419 |
gtttgatgtagcttagaaatatt |
441 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
10341867 |
gtttgatgtagcttagaaatatt |
10341845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University