View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5704_low_7 (Length: 401)
Name: NF5704_low_7
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5704_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 383
Target Start/End: Original strand, 28156265 - 28156639
Alignment:
| Q |
9 |
gagaagaagaacaatgatgtttgcacttgggtgggagttaaagattgttacaaaggcaaagttagaaagctagtactcgaatatttcaacttaactggga |
108 |
Q |
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| T |
28156265 |
gagaagaagaacgatgatgtttgcacttgggtgggagttaaagattgttacaaaggcaaagttagaaagctagtactcgaatatttcaacttaactggga |
28156364 |
T |
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| Q |
109 |
aattagattcaaacattttaaaccgtttggatcaacttcgagttcttagtttcaaaggaaactcactttcgggtcaaattcctaatctctcaaatcttgt |
208 |
Q |
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| T |
28156365 |
aattagattcaaacattttaaaccgtttggatcaacttcgagttcttagtttcaaaggaaactcgctttcgggtcaaattcctaatctttcaaatcttgt |
28156464 |
T |
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| Q |
209 |
taatctcaaatctctatatcttaatgataatcatttctccggtcagtttccggtttctgtttccgttcttcaccgtgttaaagttattgttctgtctggt |
308 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28156465 |
taatctcaaatctctatatcttaatgataatgatttctccggtcagtttccggtttctgtttccgttcttcaccgtgttaaagttattgttctgtctggt |
28156564 |
T |
|
| Q |
309 |
aatagaatctccggcgagattccggcgtcgttggttaaggttccgcggttgtatgttctctacttgcaagataat |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28156565 |
aatagaatctccggcgagattccggcgtcgttggttaaggttccgcggttgtatgttctctacttgcaagataat |
28156639 |
T |
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