View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5704_low_8 (Length: 395)
Name: NF5704_low_8
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5704_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 7214233 - 7214469
Alignment:
| Q |
10 |
aagaatattcacatcatgccattaaacttcttgttggaactcagttacactctcataatatggtactgtaaagtgaaagggatcnnnnnnngtatattat |
109 |
Q |
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| T |
7214233 |
aagaatattcacatcatgccattaaacttcttgttggaactcagttacactctcataatatggtactgtaaagtgaaagggatctttt---gtatattat |
7214329 |
T |
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| Q |
110 |
acatcaatgccctgacatcaaagattgtaccaacaatactgcatcacatatatgattgaactgaattttaatacattataaatcaaatccaatttgtaaa |
209 |
Q |
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| T |
7214330 |
acatcaatgccctgacatcaaagattgtaccaacaatactgcatcacatatatgattgaactgaattttaatacattataaatcaaatccaa-ttgtaaa |
7214428 |
T |
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| Q |
210 |
gattattatgctcttaatgttgacatgagagaagctccaaa |
250 |
Q |
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| T |
7214429 |
gattattatgctcttaatgttgacatgagagaagctccaaa |
7214469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 315 - 380
Target Start/End: Original strand, 7214534 - 7214599
Alignment:
| Q |
315 |
atagttgttccaaaatattcttatatactagtagtagttgttttgcactcagataatcaaattaac |
380 |
Q |
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| T |
7214534 |
atagctgttccaaaatattcttatatactagtagtagttgttttgcactcagataatcaaattaac |
7214599 |
T |
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