View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5704_low_9 (Length: 377)
Name: NF5704_low_9
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5704_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 27609571 - 27609211
Alignment:
| Q |
1 |
gtgaatctaaggaaataaaggatgagtgcgtggcatggtggattgaagatctctcgatactgcgtatcgatttctaccagagagttatatgtgccatggg |
100 |
Q |
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| T |
27609571 |
gtgaatctaaggaaataaaggatgagtgcgtagcatggtggattgaagatctctcgatactgcgtatcgatttctaccagagagttatatgtgccatggg |
27609472 |
T |
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| Q |
101 |
aagaatgggggttagatcagacaatattattgcttcactgatgcattatgctcaaacatcactgaagggtattggaaagtgtcaattatggaatcaatca |
200 |
Q |
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| T |
27609471 |
aagaatgggggttagatcagacaatattattgcttcactgatgcattatgctcaaacgtcactgaagggtattggaaagtgtcaattatggaatcaatca |
27609372 |
T |
|
| Q |
201 |
aggacaaattcaagtccaaccactatagaaaaggaccagagggcaattgtggaaactattgtaaacctcatgccaacagacaaaatctcttccattattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27609371 |
aggacaaattcaagtccaaccactatagaaaaggaccagagggcaattgttgaaactattgtcaacctcatgccaacagacaaaatctcttccattattc |
27609272 |
T |
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| Q |
301 |
ccctgactttcttgtttggcatgttaaagatggctatcatgttaggtgccaccattccatg |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27609271 |
ccctgactttcttgtttggcatgttaaagatggctatcatgttaggtgccaccattccatg |
27609211 |
T |
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