View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5705-Insertion-2 (Length: 1020)
Name: NF5705-Insertion-2
Description: NF5705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5705-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 4 - 403
Target Start/End: Original strand, 4662003 - 4662402
Alignment:
| Q |
4 |
aacatgaaacttggttatgcttgtgcagtgtgaatgtttcagtttttcccatattaattgttttctttgtcagtgtctgttgcttctattgtccatgtaa |
103 |
Q |
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| T |
4662003 |
aacatgaaacttggttatgcttgtgcagtgtgaatgtttcagtttttcccatattaattgttttctttgtcagtgtctgttgcttctattttccatgtaa |
4662102 |
T |
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| Q |
104 |
ttacgtactacaatctggtagtgacaactcattatatgttgcactttgttggattttaaatgtctcatgtttgtggttgcaatgcagattttgtctgatt |
203 |
Q |
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| T |
4662103 |
ttacgtactacaatctggtagtgacaactcattatatgttgcactttgttggattttaaatgtctcatgtttgtggttgcaatgcagattttgtctgatt |
4662202 |
T |
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| Q |
204 |
attacttcaactttaaatgagtcgtgtgtggagtaactttagtttgtggtatttggagtgctcagaagaagaaatttgcaattcgaggcttatgtatatt |
303 |
Q |
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| T |
4662203 |
attacttcaaccttaaatgagtcgtgtgtggagtaactttagtttgtggtatttggagtgctcagaagaagaaatttgcaattcgaggcttatgtatatt |
4662302 |
T |
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| Q |
304 |
atgtgaaatctgttaaggatactacgaaaagaacgtgtatttatcatgaaaacttgtgattgcttgttttgttctcatgttgaggttatgttacgttgct |
403 |
Q |
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| T |
4662303 |
atgtgaaatctgttaaggatactacgaaaagaacgtgtattaatcatgaaaacttgtgattgcttgttttgttatcatgttgaggttatgttacgttgct |
4662402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 515 - 810
Target Start/End: Original strand, 4662514 - 4662804
Alignment:
| Q |
515 |
gtgcacatgtgacactcctcagaggggcaaaaaccaaaaataaggttatagggagtaaattttttatgttagtaatgtttttgatttattttacagcgag |
614 |
Q |
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| T |
4662514 |
gtgcacatgtgacactc---agaggggcaaaaaccaaaaataagattatagggagtaaattttttatgttagta-tgtttttgatttattttacagcgag |
4662609 |
T |
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| Q |
615 |
gattgaacttgccgaaattgcttagaggatcattgtttgaagagctttttagaatgactaaatcaaaaaatagcatatttattggcgtaaaaaacttata |
714 |
Q |
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| T |
4662610 |
gattgaacttgctgaaattgcttagaggatcattgtttgaagagctttttagaatgactaaataaaaaaatagcatatttattggcgtaaaaaacttata |
4662709 |
T |
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| Q |
715 |
tgtatctaactgtttgattgccattttctaacacaatgccacaaaatcaatttgtgaagtgaggatcacccttcattaataaaaacttgttcatat |
810 |
Q |
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| T |
4662710 |
tgtatctaattgtttgattgccattttctaacacaatg-cacaaaatcaatttgtgaagtgaggatcacctttcattaataaaaacttgttcatat |
4662804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 876 - 954
Target Start/End: Original strand, 4662824 - 4662903
Alignment:
| Q |
876 |
cacatcaaacactttaatctacctgattaggagtattcggtgg-acaacttaatctagcctatatgcagccctttcagtg |
954 |
Q |
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| T |
4662824 |
cacatcaaacactttaatatacctgattaggagtattcggtggaacaacttaatctagcctatatgcagcccttgcagtg |
4662903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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