View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5705-Insertion-3 (Length: 987)
Name: NF5705-Insertion-3
Description: NF5705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5705-Insertion-3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 795; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 795; E-Value: 0
Query Start/End: Original strand, 7 - 970
Target Start/End: Complemental strand, 180655 - 179695
Alignment:
| Q |
7 |
agttagacccacgagtagtggatccatggtactgagattgtttagagaaattgttaccacgccccgaggatggaattggaaggatacaatcatcttttga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| || |
|
|
| T |
180655 |
agttagacccacgagtagtggatccatggtactgagattgtttagagaaattgttaccacgccccggggatggaattggaaggataccatcatctttcga |
180556 |
T |
|
| Q |
107 |
gctgcgttgatttggagaggtgtgatgagcgaaattcgctgtaggtacttgaatgtcaacctgaacaacttctcgacgcaggtagtcctcatgtgcgaga |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
180555 |
gctgcgttgatttggagaggtgtgatgagcgaaattcgctgtaggtacttgaatgtcaacctgaacagcttctcgacgcatgtagtcctcatgtgcgaga |
180456 |
T |
|
| Q |
207 |
agatggctatgaagcttcttaaaggtaaaagggtgttggcgtgtgcaaatggaggcagcgatatcattatattcggcaccaagtctattgagaacaaaga |
306 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
180455 |
agagggctatgaagcttctcgaaggtaaaagggtgttggcgtgtgcgaatggaggcagtgatatcattatattcgacaccaagtctattgagaacaaaga |
180356 |
T |
|
| Q |
307 |
gggtaatatcatcatcagaaagagacttatcaataactgcaagttcgtcaacaagacttttaactaaaaataagtaatcagttatggacttatcaccctt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
180355 |
gggtaatatcatcatcagaaagagacttatcaataactgcaagttcgtcagcaagacttttaactaaaaataagtaatcagttatggacttatcaccctt |
180256 |
T |
|
| Q |
407 |
tgtgcagtgttattgaactgagattcaatagcaacccataaggttcgagcagtttcataggaagcaaaggagatgatgtcagcctctgtcatggaggaga |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
180255 |
tgtgcagtgttattgaactgagattcaatagcaacccataaggttcgagcagtttcataggaagcaaaggagatgatgtcagcctttgtcatggaggaga |
180156 |
T |
|
| Q |
507 |
gaagaagattgatgattagctgatcaagagtgaaccactttgtgtattcaggattgggagcatagacaccattgttgataatagtttctgtttgaattgg |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
180155 |
gaagaagattgatgattagctgatcaagagtgaaccactttgtgtattcaggattgggagcatagacaccgttgttgataatagtttctgtttgaattgg |
180056 |
T |
|
| Q |
607 |
tgtggttccgtctatgtgacccat-acttcgataccagcaagcagggtagtgacttgacgtttccaagcacgaaaatttttgcgagacaatttgaacttg |
705 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
180055 |
tgtggttccgtctatgtgacccataacttcgataccagcaagcagggtagtgacttgacgtttccaagcacgaaaatttttgctagacaatttgaacgtg |
179956 |
T |
|
| Q |
706 |
attgaggcatttagaataagatatgatttggtgttggaagggttggtggccatgttgttgaaaataggatcgtatggtgttgttaagcttcaagaaaatc |
805 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
179955 |
attgaggcatttagaataagatatgatttggtgttggaagggttggtggccatgttgttgaaaataggatcttatggtgctgttaagcttcaagaaaatc |
179856 |
T |
|
| Q |
806 |
tgataccatataagagtttgaatataagagtttgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgaca |
904 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
179855 |
tgataccatataagagtttgaatataagagtt---------gttgtattgaattatgtattgctgatacatgtatttaagtacaacgatatgccttagca |
179765 |
T |
|
| Q |
905 |
ttaagagat-actacctagcttattttatggt-acaactttatctacaa--caacagctgtgcaattcaa |
970 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| |
|
|
| T |
179764 |
ttaagagataactacctagcttattttatggtaacaactttatctacaaacaaacagctatgcaattcaa |
179695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 413 - 970
Target Start/End: Complemental strand, 1700633 - 1700091
Alignment:
| Q |
413 |
gtgttattgaactgagattcaatagcaacccataaggttcgagcagtttcataggaagcaaaggagatgatgtcagcctctgtcatggaggagagaagaa |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1700633 |
gtgttattgaactgagattcaatagcaacccataaggttcgagcagtttcataggaagcaaaggagatgctgtcagcctctgtcatggaggagagaagaa |
1700534 |
T |
|
| Q |
513 |
gattgatgattagctgatcaagagtgaaccactttgtgtattcaggattgggagcatagacaccattgttgataatagtttctgtttgaattggtgtggt |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1700533 |
gattgatgattagctgatcaagagtgaaccactttgtgtaatcaggattgggagcagagacaccgttgttgataatagtttctgtttgaattggtgtggt |
1700434 |
T |
|
| Q |
613 |
tccgtctatgtgacccat-acttcgataccagcaagcagggtagtgacttgacgtttccaagcacgaaaatttttgcgagacaatttgaacttgattgag |
711 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| |
|
|
| T |
1700433 |
tccgtctatgtgacccataacttcgataccagcaagcagggtagtgacttgacgtttccaagcacggaaatttttgcgagacagtttgaacgtgattgag |
1700334 |
T |
|
| Q |
712 |
gcatttagaataagatatgatttggtgttggaagggttggtggccatgttgttgaaaataggatcgtatggtgttgttaagcttcaagaaaatctgatac |
811 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| | ||| |||||||||||||||||||||||||| |
|
|
| T |
1700333 |
gcatttagaataagagatgatttggtgttggaagggttggtggcca---tgttgaaaataggatcgtgtagtgctgttaagcttcaagaaaatctgatac |
1700237 |
T |
|
| Q |
812 |
catataagagtttgaatataagagtttgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgacattaaga |
910 |
Q |
| |
|
| ||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
1700236 |
c--------------atataagagtttgaatggcaattgtttttaattatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaaga |
1700151 |
T |
|
| Q |
911 |
gat-actacctagcttattttatggt-acaactttatctacaacaacagctgtgcaattcaa |
970 |
Q |
| |
|
||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||| |
|
|
| T |
1700150 |
gataactacctagcttattttatggtaacagctttatctaca--aacagctgtgcaattcaa |
1700091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 413
Target Start/End: Complemental strand, 1701082 - 1700676
Alignment:
| Q |
7 |
agttagacccacgagtagtggatccatggtactgagattgtttagagaaattgttaccacgccccgaggatggaattggaaggatacaatcatcttttga |
106 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||| || | |||||||||||||||||||| |||||| ||||| |
|
|
| T |
1701082 |
agttagacccacgagtattggatccatggtgctgggattgtttagagaaattgttaccacgtcctgtggatggaattggaaggataccatcatcctttga |
1700983 |
T |
|
| Q |
107 |
gctgcgttgatttggagaggtgtgatgagcgaaattcgctgtaggtacttgaatgtcaacctgaacaacttctcgacgcaggtagtcctcatgtgcgaga |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
1700982 |
gctgcgttgatttggagaggtgtgatgagcgaaattcgctgtaggtacttgaatgtcaacctgaacagcttctcgacgcaggtagtcatcatgtgcgaga |
1700883 |
T |
|
| Q |
207 |
agatggctatgaagcttcttaaaggtaaaagggtgttggcgtgtgcaaatggaggcagcgatatcattatattcggcaccaagtctattgagaacaaaga |
306 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
1700882 |
agatggctatgaagctcctcaaaggtaaaagggtgttggcgtgtgcgaatggaggcagcaatatcattatattcggcaccaagtccattgagaacaaata |
1700783 |
T |
|
| Q |
307 |
gggtaatatcatcatcagaaagagacttatcaataactgcaagttcgtcaacaagacttttaactaaaaataagtaatcagttatggacttatcaccctt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1700782 |
gggtaatatcatcatcagaaagagacttatcaataactgcaagttcgtcagcaagacttttaactgaaaataagtaatcagttatggacttatcaccctt |
1700683 |
T |
|
| Q |
407 |
tgtgcag |
413 |
Q |
| |
|
||||||| |
|
|
| T |
1700682 |
tgtgcag |
1700676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 828 - 970
Target Start/End: Complemental strand, 1704652 - 1704509
Alignment:
| Q |
828 |
tataagagtttgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgacattaagagat-actacctagctt |
925 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
1704652 |
tataagagtttgaatggcaattgtttttaattatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacctagctt |
1704553 |
T |
|
| Q |
926 |
attttatggt-acaactttatctacaacaacagctgtgcaattcaa |
970 |
Q |
| |
|
|||||||||| ||| ||||||||||| |||||||||||||||||| |
|
|
| T |
1704552 |
attttatggtaacagctttatctaca--aacagctgtgcaattcaa |
1704509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 828 - 970
Target Start/End: Original strand, 20613285 - 20613427
Alignment:
| Q |
828 |
tataagagtttgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgacattaagagat-actacctagctt |
925 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
20613285 |
tataagagtttgaatggcaattgttttta-ttatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacctagctt |
20613383 |
T |
|
| Q |
926 |
attttatggt-acaactttatctacaacaacagctgtgcaattcaa |
970 |
Q |
| |
|
||| |||||| ||| ||||||||||| |||||||||||||||||| |
|
|
| T |
20613384 |
attatatggtaacagctttatctaca--aacagctgtgcaattcaa |
20613427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 3e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 828 - 970
Target Start/End: Original strand, 35919911 - 35920053
Alignment:
| Q |
828 |
tataagagtttgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgacattaagagat-actacctagctt |
925 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
35919911 |
tataagagtttgaatggcaattgtttt-aattatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacctagctt |
35920009 |
T |
|
| Q |
926 |
attttatggt-acaactttatctacaacaacagctgtgcaattcaa |
970 |
Q |
| |
|
||| |||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
35920010 |
attctatggtaacaactttatctaca--aacagctgtgcaattcaa |
35920053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 430 - 554
Target Start/End: Complemental strand, 3540382 - 3540258
Alignment:
| Q |
430 |
ttcaatagcaacccataaggttcgagcagtttcataggaagcaaaggagatgatgtcagcctctgtcatggaggagagaagaagattgatgattagctga |
529 |
Q |
| |
|
|||||| ||| |||| |||||| |||||| |||||||| ||||| || || |||| || |||||||| |||||| ||||||||||||||| || || |
|
|
| T |
3540382 |
ttcaatggcatcccacaaggttttagcagtgtcataggaggcaaatgatatactgtctgcttctgtcataaaggagataagaagattgatgatgagttgg |
3540283 |
T |
|
| Q |
530 |
tcaagagtgaaccactttgtgtatt |
554 |
Q |
| |
|
|||| ||||||||| |||||||||| |
|
|
| T |
3540282 |
tcaatagtgaaccaatttgtgtatt |
3540258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 327
Target Start/End: Complemental strand, 3540597 - 3540528
Alignment:
| Q |
258 |
gaggcagcgatatcattatattcggcaccaagtctattgagaacaaagagggtaatatcatcatcagaaa |
327 |
Q |
| |
|
|||||||| |||||| |||||| | |||||| | |||||||||| ||||||| | |||||||||||||| |
|
|
| T |
3540597 |
gaggcagcaatatcacgatattccgaaccaagaccattgagaacatagagggtgagatcatcatcagaaa |
3540528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 430 - 554
Target Start/End: Complemental strand, 5399385 - 5399261
Alignment:
| Q |
430 |
ttcaatagcaacccataaggttcgagcagtttcataggaagcaaaggagatgatgtcagcctctgtcatggaggagagaagaagattgatgattagctga |
529 |
Q |
| |
|
|||||| ||| |||| |||||| |||||| |||||||| ||||| || || |||| || |||||||| ||||||| ||||||||||||||| || ||| |
|
|
| T |
5399385 |
ttcaatggcatcccacaaggttttagcagtgtcataggaggcaaatgatatactgtctgcttctgtcatagaggagataagaagattgatgatgagttga |
5399286 |
T |
|
| Q |
530 |
tcaagagtgaaccactttgtgtatt |
554 |
Q |
| |
|
|||| ||||||||| |||||||||| |
|
|
| T |
5399285 |
tcaatagtgaaccaatttgtgtatt |
5399261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 437 - 554
Target Start/End: Original strand, 26593779 - 26593896
Alignment:
| Q |
437 |
gcaacccataaggttcgagcagtttcataggaagcaaaggagatgatgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagag |
536 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| |||||||| | ||||||| || ||||||| |||| |||||||| || |||| ||||||| | |
|
|
| T |
26593779 |
gcaacccatagggttcgagcagtgtcataggaggcaaaggaaagactgtcagcttcaatcatggatgagatgagaagatttataattaattgatcaatgg |
26593878 |
T |
|
| Q |
537 |
tgaaccactttgtgtatt |
554 |
Q |
| |
|
||||||| || ||||||| |
|
|
| T |
26593879 |
tgaaccaattggtgtatt |
26593896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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