View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5705-Insertion-4 (Length: 982)
Name: NF5705-Insertion-4
Description: NF5705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5705-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Original strand, 36372701 - 36373100
Alignment:
| Q |
17 |
tattgaattaataataaatcacaaagaaaccgaacttaccgtaacgcttgtggagaaatgtaaattggactaagtagtaacaaattaattcaaagtaaac |
116 |
Q |
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| T |
36372701 |
tattgaattaataataaatcacaaagaaaccgaacttaccgtaacgcttgtggagaaatgtaaattggactaagtagtaacaaattaattcaaagtaaac |
36372800 |
T |
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| Q |
117 |
tagaagtacattccaggagggaatgctccttctataaataaaacacacaagcacaatactatgaatt----------tcaatggttctttgtttctgatt |
206 |
Q |
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| T |
36372801 |
tagaagtacattccaggagggaatgctccttctataaataaaacacagaagcacaaaactatgaattcagttcaatttcaatggttctttgtttctgatt |
36372900 |
T |
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| Q |
207 |
tgaataattttatgagagaagagagagcatgaaatgggtttttatagtagtttgatggtaaatatcgagcaagttctagcactcacgattcttacacgtg |
306 |
Q |
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| T |
36372901 |
tgaataattttatgagagaagagagagcatgaaatgggtttttatagtagtttgatggtaaatatcgagcaagttctagcactcacgattcttacacgtg |
36373000 |
T |
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| Q |
307 |
gattgcggcgttccataggattcatcctgcccaatccattacttaattcnnnnnnnattttaatcgtcaatcaatgataataaattattctattttctga |
406 |
Q |
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| T |
36373001 |
gatttcggcgttccataggattcatcctgcccaatccattacttaattctttttttattttaatcgtcaatcaatgataataaattattctattttctga |
36373100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 9e-82
Query Start/End: Original strand, 722 - 938
Target Start/End: Original strand, 36373467 - 36373688
Alignment:
| Q |
722 |
aatcacttatttatcatagaaaattaattcattgtgtgcttctaccatgtttaagggtgtagttatagaacagatcctaggactctaatccgattttgac |
821 |
Q |
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| T |
36373467 |
aatcacttatttatcatagaaaattaattcattgtgtgcttctaccatgtttaagggtgtagttatagaacagatcctaggactctaattcaattttgac |
36373566 |
T |
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| Q |
822 |
aaagatgttttattcttgagattccgtgaatgataacccgcttgtacaaactt-aaaagtttcac-aaatatcttatgaaaa--ggcctattatgtgatt |
917 |
Q |
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| T |
36373567 |
aaagatgttttattcttgagattccgtgaatgataacctgcttgtacaagcttaaaaagtttcacaaaatatcttatgaaaaaggacctattatatgatt |
36373666 |
T |
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| Q |
918 |
caatttaat-atatcttcgata |
938 |
Q |
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| T |
36373667 |
taatctaataatatcttcgata |
36373688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 505 - 636
Target Start/End: Original strand, 36373226 - 36373357
Alignment:
| Q |
505 |
cagctcatcaactcatttataatgnnnnnnnaaactcgatattaaactcaatgatgaactaatttgggaatatatcacgatgtttattagtggagattaa |
604 |
Q |
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| T |
36373226 |
cagctcatcaactcatgtataatgtttttttaaactcgatattaaactcaatgatgaactaatttgggaataaatcacgatgtttattagtggagattaa |
36373325 |
T |
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| Q |
605 |
atttaaactaggtcttaattgtctacaccatg |
636 |
Q |
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| T |
36373326 |
atttaaactaggtcttaattgtctacaccatg |
36373357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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