View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5705-Insertion-5 (Length: 978)

Name: NF5705-Insertion-5
Description: NF5705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5705-Insertion-5
NF5705-Insertion-5
[»] chr2 (14 HSPs)
chr2 (7-745)||(1602537-1603276)
chr2 (821-929)||(1603352-1603465)
chr2 (169-408)||(35020994-35021242)
chr2 (253-432)||(40609808-40609989)
chr2 (164-245)||(42006549-42006630)
chr2 (367-431)||(964105-964169)
chr2 (129-232)||(35695323-35695427)
chr2 (110-196)||(40609900-40609987)
chr2 (110-215)||(25767593-25767699)
chr2 (164-223)||(1642489-1642548)
chr2 (256-346)||(20586415-20586504)
chr2 (173-248)||(27577325-27577404)
chr2 (280-342)||(34922158-34922220)
chr2 (352-409)||(35695325-35695382)
[»] chr3 (26 HSPs)
chr3 (110-430)||(38216080-38216412)
chr3 (109-440)||(39450609-39450955)
chr3 (110-409)||(39492284-39492594)
chr3 (107-224)||(14742169-14742285)
chr3 (110-196)||(39450619-39450706)
chr3 (161-238)||(864564-864641)
chr3 (303-434)||(25189598-25189731)
chr3 (101-196)||(25189640-25189736)
chr3 (164-295)||(43071678-43071815)
chr3 (151-246)||(33157635-33157729)
chr3 (107-196)||(38216325-38216415)
chr3 (130-196)||(38018267-38018334)
chr3 (352-431)||(38018459-38018538)
chr3 (352-438)||(39492276-39492362)
chr3 (132-220)||(11256774-11256863)
chr3 (355-408)||(11256774-11256827)
chr3 (171-232)||(40559150-40559211)
chr3 (114-250)||(49726591-49726728)
chr3 (164-196)||(49726457-49726489)
chr3 (110-196)||(14741939-14742026)
chr3 (130-196)||(39492528-39492595)
chr3 (110-203)||(38018443-38018537)
chr3 (289-342)||(49519185-49519239)
chr3 (367-443)||(14741925-14742002)
chr3 (179-244)||(38256830-38256894)
chr3 (684-737)||(45541667-45541720)
[»] chr7 (25 HSPs)
chr7 (110-430)||(37327296-37327627)
chr7 (109-249)||(4965340-4965478)
chr7 (110-433)||(29366347-29366681)
chr7 (110-245)||(44857820-44857952)
chr7 (110-245)||(3565564-3565700)
chr7 (126-408)||(40744404-40744698)
chr7 (164-295)||(20896320-20896461)
chr7 (164-248)||(45871762-45871846)
chr7 (181-431)||(23415960-23416214)
chr7 (110-196)||(42055286-42055371)
chr7 (110-204)||(44858051-44858145)
chr7 (110-194)||(23416129-23416213)
chr7 (164-245)||(46303755-46303836)
chr7 (367-423)||(4965538-4965594)
chr7 (352-443)||(29366603-29366694)
chr7 (106-196)||(37327292-37327383)
chr7 (352-435)||(44858068-44858150)
chr7 (109-233)||(11752917-11753040)
chr7 (106-248)||(26471997-26472138)
chr7 (106-248)||(26548437-26548578)
chr7 (164-222)||(39751232-39751290)
chr7 (164-249)||(17298695-17298780)
chr7 (110-214)||(36742192-36742297)
chr7 (188-246)||(2449511-2449569)
chr7 (101-190)||(29366341-29366431)
[»] chr1 (24 HSPs)
chr1 (110-341)||(26767619-26767858)
chr1 (119-434)||(43670692-43671017)
chr1 (105-433)||(38275753-38276089)
chr1 (164-243)||(24263966-24264045)
chr1 (107-248)||(43344959-43345099)
chr1 (131-248)||(43416251-43416367)
chr1 (164-417)||(7191917-7192180)
chr1 (164-245)||(12857465-12857546)
chr1 (108-231)||(27323375-27323498)
chr1 (162-225)||(5118899-5118962)
chr1 (110-188)||(15061449-15061528)
chr1 (254-430)||(42508254-42508432)
chr1 (132-216)||(45089985-45090070)
chr1 (173-249)||(15061639-15061714)
chr1 (367-435)||(43344793-43344861)
chr1 (102-196)||(38275748-38275843)
chr1 (106-188)||(42508250-42508333)
chr1 (110-204)||(43670696-43670791)
chr1 (113-245)||(27879579-27879713)
chr1 (169-250)||(46561899-46561981)
chr1 (352-437)||(26767612-26767696)
chr1 (164-249)||(44166647-44166731)
chr1 (164-248)||(44517690-44517774)
chr1 (590-623)||(9572172-9572205)
[»] scaffold0157 (2 HSPs)
scaffold0157 (110-420)||(21133-21453)
scaffold0157 (114-196)||(21376-21459)
[»] chr4 (22 HSPs)
chr4 (110-420)||(12499024-12499344)
chr4 (164-436)||(18879142-18879424)
chr4 (110-245)||(44363317-44363453)
chr4 (252-431)||(6216196-6216376)
chr4 (164-430)||(1351266-1351541)
chr4 (107-342)||(43365795-43366038)
chr4 (164-250)||(38435140-38435226)
chr4 (110-196)||(44362911-44362998)
chr4 (253-437)||(44362904-44363090)
chr4 (302-397)||(7100581-7100678)
chr4 (107-250)||(40838033-40838177)
chr4 (114-196)||(12499018-12499101)
chr4 (110-196)||(18879331-18879418)
chr4 (164-248)||(15562168-15562252)
chr4 (352-436)||(44363375-44363459)
chr4 (107-209)||(6216420-6216522)
chr4 (165-251)||(43306691-43306776)
chr4 (110-237)||(6216197-6216324)
chr4 (164-233)||(36061223-36061292)
chr4 (256-345)||(51871754-51871842)
chr4 (109-196)||(1351265-1351353)
chr4 (371-428)||(40837889-40837945)
[»] chr5 (17 HSPs)
chr5 (108-245)||(39741461-39741599)
chr5 (107-251)||(13639553-13639698)
chr5 (354-434)||(3577779-3577859)
chr5 (131-248)||(13361004-13361122)
chr5 (164-245)||(3577596-3577677)
chr5 (164-250)||(5548143-5548229)
chr5 (107-245)||(30223781-30223918)
chr5 (114-185)||(3577779-3577851)
chr5 (355-431)||(11488849-11488925)
chr5 (164-248)||(14626418-14626502)
chr5 (367-430)||(13639632-13639695)
chr5 (159-246)||(37510258-37510344)
chr5 (354-430)||(14626201-14626277)
chr5 (107-182)||(19895445-19895520)
chr5 (164-248)||(30968810-30968894)
chr5 (107-195)||(14626198-14626287)
chr5 (403-436)||(31472041-31472074)
[»] chr6 (14 HSPs)
chr6 (109-434)||(28587611-28587946)
chr6 (110-341)||(10244379-10244619)
chr6 (110-245)||(4837997-4838133)
chr6 (109-245)||(6196698-6196835)
chr6 (118-250)||(2236929-2237062)
chr6 (352-420)||(28587867-28587935)
chr6 (367-430)||(6198104-6198167)
chr6 (164-249)||(33819859-33819944)
chr6 (108-196)||(6198080-6198169)
chr6 (183-243)||(2145542-2145602)
chr6 (353-431)||(10244542-10244620)
chr6 (206-248)||(12480423-12480465)
chr6 (352-417)||(4838055-4838120)
chr6 (197-250)||(33446951-33447004)
[»] chr8 (24 HSPs)
chr8 (164-245)||(3207673-3207754)
chr8 (113-245)||(13267796-13267928)
chr8 (110-233)||(20771631-20771755)
chr8 (110-233)||(20781425-20781549)
chr8 (108-248)||(39186150-39186292)
chr8 (107-211)||(36632863-36632966)
chr8 (170-233)||(38255212-38255275)
chr8 (164-435)||(24587142-24587422)
chr8 (114-247)||(32089220-32089354)
chr8 (367-432)||(3207876-3207941)
chr8 (110-196)||(3207852-3207939)
chr8 (353-435)||(20771678-20771760)
chr8 (353-435)||(20781472-20781554)
chr8 (368-430)||(39186152-39186214)
chr8 (164-245)||(30492921-30493002)
chr8 (258-318)||(30537801-30537861)
chr8 (164-231)||(11158907-11158974)
chr8 (253-430)||(3170818-3171001)
chr8 (368-430)||(6898784-6898846)
chr8 (253-331)||(11732086-11732164)
chr8 (107-196)||(38255395-38255485)
chr8 (302-346)||(14954113-14954158)
chr8 (352-433)||(24587084-24587165)
chr8 (351-420)||(30537656-30537725)
[»] scaffold0122 (1 HSPs)
scaffold0122 (162-250)||(17717-17805)
[»] scaffold0062 (2 HSPs)
scaffold0062 (110-224)||(20222-20337)
scaffold0062 (110-224)||(30390-30505)
[»] scaffold0018 (1 HSPs)
scaffold0018 (165-247)||(162135-162218)
[»] scaffold0136 (1 HSPs)
scaffold0136 (165-247)||(32468-32550)


Alignment Details
Target: chr2 (Bit Score: 670; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 7 - 745
Target Start/End: Original strand, 1602537 - 1603276
Alignment:
Q  7 aagtagggcctggtaaaaaccttcaccaattatagaccagtttgacaaacaacatacatcagctaaggaaagctacgaaattatcaaatgctatatttat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1602537 aagtagggcctggtaaaaaccttcaccaattatagaccagtttgacaaacaacatacatcagctaaggaaagctacgaaattatcaaatgctatatttat 1602636  T
Q  107 ggtttaattgcagttttagtctccctattttcaccattttgcggaattgatcccttgttttaaaatttgacagttttggtccctccatcaaatatttggt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1602637 ggtttaattgcagttttagtctccctattttcaccattttgcggaattgatcccttgttttaaaatttgacagttttggtccctccatcaaatatttggt 1602736  T
Q  207 ctaaaatatggtgatatgatatgttttcaattaagtttttaagagaacaatttcatcgatgttgatatgtttccatcatcacatcatataccaattcatt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1602737 ctaaaatatggtgatatgatatgttttcaattaagtttttaagagaacaatttcatcgatgttgatatgtttccatcatcacatcatataccaattcatt 1602836  T
Q  307 taaaacatatcacatccccaatttttagttaaaaaatatgtggaagaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaa 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1602837 taaaacatatcacatccccaatttttagttaaaaaatatgtggaagaccaaaattgtcagattttaaaatagggggaccaaatcctcaaaatggtgaaaa 1602936  T
Q  407 tagtgggaccaaaattgtaattaagcctatatttatttttcaataaaaacatgaaacaaaggtaaccataataaaaatggcnnnnnnnntcttcataact 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  1602937 tagtgggaccaaaattgtaattaagcctatatttatttttcaataaaaacatgaaacaaaggtaaccataataaaaatggcaaaaaaaatcttcataact 1603036  T
Q  507 ttaagcatgaagcatagctaataaatattactaggttcaagcaacttcaacttacaacataggcctgtttggataaccaacttataaagttaaaatgctt 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1603037 ttaagcatgaagcatagctaataaatattactaggttcaagcaacttcaacttacaacataggcctgtttggataaccaacttataaagttaaaatgctt 1603136  T
Q  607 ttgtataagctataagctttttatgataataagctgaaaacaacttctttcataagttctcacc-nnnnnnnnnngttaacagtctagcaaatgtttata 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||    
T  1603137 ttgtataagctataagctttttatgataataagctgaaaacaacttctttcataagttctcaccaaaaaaaaaaagttaacagtctagcaaatgtttata 1603236  T
Q  706 gcattaaataacctcaaataagtcaaaccaaatacgcgca 745  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  1603237 gcattaaataacctcaaataagttaaaccaaatacgcgca 1603276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 821 - 929
Target Start/End: Original strand, 1603352 - 1603465
Alignment:
Q  821 attggaaattcattttcaccgtttccttattatccaaacactacatcaaccagatttctacgttctaatc-aatc-aaatttacaaaa--ttaaaaagag 916  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||  | ||||||||    
T  1603352 attggaaattcattttcaccgtttccttattatccaaacactacatcaaccagatttctacgttctaatcaaatcaaaatttacaaaaattaaaaaagag 1603451  T
Q  917 tg-aaatcacagca 929  Q
    || |||||||||||    
T  1603452 tgaaaatcacagca 1603465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 169 - 408
Target Start/End: Complemental strand, 35021242 - 35020994
Alignment:
Q  169 aaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaagagaa--------caatttc 260  Q
    ||||| |||| ||||||||| || ||||||| ||| ||||||||||| ||||||||||||||||| ||| ||||||| |||| ||        ||||||     
T  35021242 aaattagacaattttggtccttctatcaaattttttgtctaaaatattgtgatatgatatgttttaaatgaagttttcaagaaaattttgtcgcaatttt 35021143  T
Q  261 atcgatgttgatatgtttccatcatcacatcatataccaattcatttaaaacatatcacatccccaatttttagttaaaaaatatg-tggaagaccaaaa 359  Q
    |||||||||||| | |||| ||| ||| ||||||| |||   |||||||||  ||||||||| |   ||| ||||| ||||||||| |||| || |||||    
T  35021142 atcgatgttgatctttttctatcttcagatcatattccacaacatttaaaatttatcacatcacatttttatagttcaaaaatatgatggaggatcaaaa 35021043  T
Q  360 ttgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaata 408  Q
     ||||  |||||||||||| |||||||  | |  |||||||||||||||    
T  35021042 ctgtcgaattttaaaatagagggaccatttatgtaaaatggtgaaaata 35020994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 253 - 432
Target Start/End: Original strand, 40609808 - 40609989
Alignment:
Q  253 acaatttcatcgatgttgatatgtttccatcatcacatcatataccaattcatttaaaacatatcacatccccaatttttagttaaaaaatatg-tggaa 351  Q
    ||||||||||| ||||| || | ||| |||| ||| ||||||| |||   |||||||||  ||||||||| |   ||| ||||| ||||||||| ||||     
T  40609808 acaatttcatcaatgttaatcttttttcatcttcatatcatattccacgacatttaaaagttatcacatcacatttttatagtttaaaaatatgatggag 40609907  T
Q  352 g-accaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaagc 432  Q
    | | ||||| | ||| ||||||||||||||||||||| |||  ||||| ||||||||||  ||||||||| || ||||||||    
T  40609908 ggatcaaaactctcaaattttaaaatagggggaccaattctgtaaaattgtgaaaataggaggaccaaaactgcaattaagc 40609989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 42006630 - 42006549
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttt 245  Q
    ||||||||||| ||||||||||||| |  ||  ||||||| ||| |||||||| |||||||| ||||||| |||||||||||    
T  42006630 ttttaaaatttcacagttttggtccttttatataatattttgtcgaaaatatgatgatatgacatgttttaaattaagtttt 42006549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 367 - 431
Target Start/End: Original strand, 964105 - 964169
Alignment:
Q  367 attttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaag 431  Q
    ||||||||||||||||||||| || |||||| | | |||||||  ||||||||||||||||||||    
T  964105 attttaaaatagggggaccaattcctcaaaaagataaaaatagaaggaccaaaattgtaattaag 964169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 35695323 - 35695427
Alignment:
Q  129 ccctattttcaccattttgcggaattgatccc-ttgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgata 227  Q
    |||||||||||||||||||   ||||| |||| || |||||||||| ||||  ||||||||||  ||| |||||||  |||||||||||||||||| | |    
T  35695323 ccctattttcaccattttgtaaaattggtccccttattttaaaattcgacaactttggtccctttatctaatattttatctaaaatatggtgatataaca 35695422  T
Q  228 tgttt 232  Q
    |||||    
T  35695423 tgttt 35695427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 40609987 - 40609900
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatca 196  Q
    |||||||||||||| |||  ||||||||||| ||||| | |||||| ||||  | ||||||||||||| ||||||| |||||||||||    
T  40609987 ttaattgcagttttggtcctcctattttcacaattttacagaattggtccccctattttaaaatttgagagttttgatccctccatca 40609900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 25767699 - 25767593
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatcccttgtttt-aaaatttgacagttttggtccctccatcaaatatttggtct 208  Q
    ||||||||||||||| ||||| |||||| ||||||||   ||||||||| | | |||| ||| ||| |||| ||||||| || ||||||||||||  |||    
T  25767699 ttaattgcagttttactctccatatttttaccattttaaagaattgatctcatattttgaaatttttacagctttggtctctgcatcaaatattttatct 25767600  T
Q  209 aaaatat 215  Q
    |||||||    
T  25767599 aaaatat 25767593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 1642548 - 1642489
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatat 223  Q
    ||||||||||||| ||||||  |  || ||||||||||||||||||||||||| ||||||    
T  1642548 ttttaaaatttgatagttttaattgcttcatcaaatatttggtctaaaatatgatgatat 1642489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 256 - 346
Target Start/End: Original strand, 20586415 - 20586504
Alignment:
Q  256 atttcatcgatgttgatatgtttccatcatcacatcatataccaattcatttaaaacatatcacatccccaatttttagttaaaaaatatg 346  Q
    ||||||||||| ||||| | |||||||| | | ||||||||| |   |||||||||||||||||||| ||  ||||||||| |||||||||    
T  20586415 atttcatcgatattgattt-tttccatctttatatcatatactacgacatttaaaacatatcacatcacctttttttagttcaaaaatatg 20586504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 27577325 - 27577404
Alignment:
Q  173 ttgacagttttggtccctccatcaaatatttggtctaaaatatggtg----atatgatatgttttcaattaagtttttaa 248  Q
    ||||||||||| ||||||||||  | ||||| |||||||||||||||    |||||| ||||||| ||||| ||||||||    
T  27577325 ttgacagttttagtccctccatggactatttagtctaaaatatggtggtatatatgacatgttttaaattatgtttttaa 27577404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 34922158 - 34922220
Alignment:
Q  280 catcatcacatcatataccaattcatttaaaacatatcacatccccaatttttagttaaaaaa 342  Q
    |||| ||| ||||||| ||||  |||||||||| ||||||||| || ||||||||||||||||    
T  34922158 catcttcatatcatattccaagacatttaaaacttatcacatcacctatttttagttaaaaaa 34922220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 35695382 - 35695325
Alignment:
Q  352 gaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatag 409  Q
    ||||||| |||||  ||||||||||| ||||||||| | | |||||||||||||||||    
T  35695382 gaccaaagttgtcgaattttaaaataaggggaccaattttacaaaatggtgaaaatag 35695325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 5e-40; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 110 - 430
Target Start/End: Original strand, 38216080 - 38216412
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatccct--tgttttaaaatttgacagttttggtccctccatcaaatatttggtc 207  Q
    |||||| ||||||| ||  ||||||||||  ||||||| | ||||| ||||   | |||||||||| |||| |||||||| ||| ||||||||||| |||    
T  38216080 ttaatttcagttttggtacccctattttcttcattttgtgaaattggtcccccctattttaaaattcgacaattttggtcgctctatcaaatattttgtc 38216179  T
Q  208 taaaatatggtgatatgatatgttttcaattaagtttttaagaga--------acaatttcatcgatgttgatatgtttccatcatcacatcatatacca 299  Q
    |||||||| ||||||||||||||||| ||| ||||||| ||||||        |||||||||| ||||||||| | |||||||| ||| ||||||| |||    
T  38216180 taaaatattgtgatatgatatgttttaaataaagttttcaagagaattttgttacaatttcattgatgttgatttttttccatcttcatatcatattcca 38216279  T
Q  300 attcatttaaaacatatcacatccccaatttttagttaaaaaatatg-tggaa-gaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaa 397  Q
       |||||||||  |||||| || |   ||| | ||| ||||||||| ||||| |||||||| ||||  ||||||||||||||||||||| | | |||||    
T  38216280 caacatttaaaatttatcacgtcacttttttattgttcaaaaatatgatggaatgaccaaaagtgtcgaattttaaaatagggggaccaattatgcaaaa 38216379  T
Q  398 tggtgaaaatagtgggaccaaaattgtaattaa 430  Q
    |||||||||||| |||||||||| || ||||||    
T  38216380 tggtgaaaatagggggaccaaaactgcaattaa 38216412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 109 - 440
Target Start/End: Complemental strand, 39450955 - 39450609
Alignment:
Q  109 tttaattgcagttttagtctccctattttcaccattttgcggaattgatcc-cttgttttaaaatttgacagttttggtccctccatcaaatatttggtc 207  Q
    ||||||||||||||| |||  |||||||| | |||| |||  ||||| ||| | | ||||||||||| ||| |||||||| ||| ||||||||||| |||    
T  39450955 tttaattgcagttttggtcctcctatttttatcattatgcaaaattggtccacctattttaaaatttaacaattttggtctctctatcaaatattttgtc 39450856  T
Q  208 taaaatatggtgatatgata----tgttttcaattaagtttttaagagaa--------caatttcatcgatgttgatatgtttccatc--atcacatcat 293  Q
    |||||||| |||||| ||||    |||||| ||| ||||||| |||||||        ||||||||| ||||||||| |  |||||||  |||  |||||    
T  39450855 taaaatattgtgatacgataaatatgttttaaatgaagttttcaagagaatttggttacaatttcatagatgttgattt--ttccatcttatcttatcat 39450758  T
Q  294 ataccaattcatttaaaacatatcacatccccaatttttagttaaaaaatatg-tggaag-accaaaattgtcagattttaaaatagggggaccaaatct 391  Q
    ||  ||   |||||||||  | ||||||| |   ||| ||||| ||||||||| |||| | | ||||| ||||| ||||||||||||||||||||| |||    
T  39450757 atttcatgacatttaaaatttttcacatcacatttttatagttcaaaaatatgatggagggatcaaaactgtcaaattttaaaatagggggaccaattct 39450658  T
Q  392 tcaaaatggtgaaaatagtgggaccaaaattgtaattaagcctatattt 440  Q
     ||||||||||||||||| ||||| |||| || ||||||||||| ||||    
T  39450657 gcaaaatggtgaaaatagggggacaaaaactgcaattaagcctaaattt 39450609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 110 - 409
Target Start/End: Original strand, 39492284 - 39492594
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtct 208  Q
    |||||||||||||| ||  || |||||||| ||||||||  ||||| ||||  | || ||||||| |||| | |||||||||| ||||||||||| ||||    
T  39492284 ttaattgcagttttggttcccttattttcatcattttgcaaaattggtccccctattataaaattcgacaatgttggtccctctatcaaatattttgtct 39492383  T
Q  209 aaaatatggtgatatgatatgttttcaattaagtttttaagaga--------acaatttcatcgatgttgatatgtttccatcatcacatcatataccaa 300  Q
    ||||||| ||||||||||||||||  ||| ||||||| ||| ||        |||| |||||| |||||||| | || ||||| ||| || |||| |||     
T  39492384 aaaatattgtgatatgatatgtttcaaatgaagttttcaagggaattttgttacaacttcatcaatgttgatcttttaccatcttcaaattatattccat 39492483  T
Q  301 ttcatttaaaacatatcacatccccaatttttagttaaaaaatatg-tgga-agaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaat 398  Q
      |||||||||  ||||||||| |  | || ||||| ||||||||| ||||  |||||||| || |  || |||||||| ||||||||| ||| ||||||    
T  39492484 gacatttaaaatttatcacatcacatacttatagttcaaaaatatgatggagggaccaaaactgacgaatgttaaaatacggggaccaattctgcaaaat 39492583  T
Q  399 ggtgaaaatag 409  Q
    |||||||||||    
T  39492584 ggtgaaaatag 39492594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 14742285 - 14742169
Alignment:
Q  107 ggtttaattgcagttttagtctccctattttcaccattttgcggaattgat-cccttgttttaaaatttgacagttttggtccctccatcaaatatttgg 205  Q
    ||||||||||||||||| |||| | |||||||| ||||||||| ||||| | ||| | |||||||||| |||| |||||||||||| ||||||||||  |    
T  14742285 ggtttaattgcagttttggtcttcttattttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctatcaaatatt--g 14742188  T
Q  206 tctaaaatatggtgatatg 224  Q
    |||||||||| ||||||||    
T  14742187 tctaaaatattgtgatatg 14742169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 39450619 - 39450706
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgat-cccttgttttaaaatttgacagttttggtccctccatca 196  Q
    |||||||||||||| ||| |||||||||||||||||||| |||||| | ||| | ||||||||||||||||||||| |||||||||||    
T  39450619 ttaattgcagtttttgtccccctattttcaccattttgcagaattggtccccctattttaaaatttgacagttttgatccctccatca 39450706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 864641 - 864564
Alignment:
Q  161 ttgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaatt 238  Q
    ||||||||||||||||||  ||||||||||| |||||||| || ||||||||||| ||||||||| ||||||| ||||    
T  864641 ttgttttaaaatttgacaaatttggtccctcgatcaaataattagtctaaaatatagtgatatgacatgttttaaatt 864564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 303 - 434
Target Start/End: Original strand, 25189598 - 25189731
Alignment:
Q  303 catttaaaacatatcacatccccaatttttagttaaaaaatatg-tggaag-accaaaattgtcagattttaaaatagggggaccaaatcttcaaaatgg 400  Q
    |||||||||  ||||||||| |   ||| ||||||||||||||| |||| | ||||||| |||   ||||||||||||||||||||| ||| ||||||||    
T  25189598 catttaaaatttatcacatcacatttttatagttaaaaaatatgatggagggaccaaaactgttgaattttaaaatagggggaccaattctgcaaaatgg 25189697  T
Q  401 tgaaaatagtgggaccaaaattgtaattaagcct 434  Q
    | ||||||| |||||||||| || ||||||||||    
T  25189698 taaaaatagggggaccaaaactgcaattaagcct 25189731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 25189736 - 25189640
Alignment:
Q  101 atttatggtttaattgcagttttagtctccctattttcaccattttgcggaattgat-cccttgttttaaaatttgacagttttggtccctccatca 196  Q
    ||||| || |||||||||||||| ||| ||||||||| |||||||||| |||||| | ||| | ||||||||||  |||||||||||||||||||||    
T  25189736 atttaaggcttaattgcagttttggtccccctatttttaccattttgcagaattggtccccctattttaaaattcaacagttttggtccctccatca 25189640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 295
Target Start/End: Complemental strand, 43071815 - 43071678
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaagaga--------aca 255  Q
    |||||||||| |||| ||||||||| || ||||||||||  ||||||||||| ||||||||||||||||| ||  ||||||| ||||||        |||    
T  43071815 ttttaaaattcgacaattttggtccttctatcaaatatt--gtctaaaatattgtgatatgatatgttttaaacgaagttttcaagagaattttgttaca 43071718  T
Q  256 atttcatcgatgttgatatgtttccatcatcacatcatat 295  Q
    |||||||||||||| || | |||||||| ||| |||||||    
T  43071717 atttcatcgatgttaatctttttccatcttcaaatcatat 43071678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 246
Target Start/End: Complemental strand, 33157729 - 33157635
Alignment:
Q  151 aattgatcccttgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagttttt 246  Q
    |||||||||||  ||||||||||||||| ||||||| |   |||||||||||| ||||||||||   |||||||||||||||| |||||| |||||    
T  33157729 aattgatcccta-ttttaaaatttgacacttttggttctctcatcaaatatttagtctaaaatacaatgatatgatatgttttaaattaaattttt 33157635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 38216415 - 38216325
Alignment:
Q  107 ggtttaattgcagttttagtctccctattttcaccattttgcggaattgat-cccttgttttaaaatttgacagttttggtccctccatca 196  Q
    ||||||||||||||||| ||| ||||||||||||||||||||  ||||| | ||| | |||||||||| |||| ||||||||  |||||||    
T  38216415 ggtttaattgcagttttggtccccctattttcaccattttgcataattggtccccctattttaaaattcgacacttttggtcattccatca 38216325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 38018267 - 38018334
Alignment:
Q  130 cctattttcaccattttgcggaattgatccc-ttgttttaaaatttgacagttttggtccctccatca 196  Q
    ||||||||||||||||| | ||||||||||| || |||||||||| |||| | |||||||||||||||    
T  38018267 cctattttcaccattttacagaattgatcccattattttaaaattcgacaatcttggtccctccatca 38018334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 352 - 431
Target Start/End: Original strand, 38018459 - 38018538
Alignment:
Q  352 gaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaag 431  Q
    |||||||||||||| |||||||||||| | |||||| |||  ||||||  |||||||| |||||||||| || |||||||    
T  38018459 gaccaaaattgtcaaattttaaaatagagagaccaattctataaaatgaagaaaatagggggaccaaaactgcaattaag 38018538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 352 - 438
Target Start/End: Complemental strand, 39492362 - 39492276
Alignment:
Q  352 gaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaagcctatat 438  Q
    |||||| ||||||  |||||| |||||||||||||| | | ||||||| ||||||||  || ||||||| || ||||||||||||||    
T  39492362 gaccaacattgtcgaattttataatagggggaccaattttgcaaaatgatgaaaataagggaaccaaaactgcaattaagcctatat 39492276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 11256774 - 11256863
Alignment:
Q  132 tattttcaccattttgcggaattgatcc-cttgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtga 220  Q
    ||||||||||||||||  |||||||||| | | ||||||||||||||| ||||| | |  ||||||| |||||||||||| |||| ||||    
T  11256774 tattttcaccattttggagaattgatcctcctattttaaaatttgacaattttgatacacccatcaattatttggtctaatatatcgtga 11256863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 11256827 - 11256774
Alignment:
Q  355 caaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaata 408  Q
    ||||||||||| ||||||||||||| ||| ||| ||| ||||||||||||||||    
T  11256827 caaaattgtcaaattttaaaataggaggatcaattctccaaaatggtgaaaata 11256774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 40559211 - 40559150
Alignment:
Q  171 atttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttt 232  Q
    |||||| ||||||| | ||| | ||||||||||||||||||| |||||||||||| ||||||    
T  40559211 atttgatagttttgctacctacgtcaaatatttggtctaaaacatggtgatatgacatgttt 40559150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 250
Target Start/End: Complemental strand, 49726728 - 49726591
Alignment:
Q  114 ttgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaa 212  Q
    ||||||||||  || || |||||| | ||||||| | |||| |||||| | |||||| |||||| | |||||||| ||| ||||||||||| ||  | ||    
T  49726728 ttgcagttttgatccccttatttttatcattttgtgaaattaatccctctattttaatatttgataattttggtctctctatcaaatattttgtacagaa 49726629  T
Q  213 tatggtgatatgatatgttttcaattaagtttttaaga 250  Q
    ||| |||||||||||| |||| ||| ||||||| ||||    
T  49726628 tattgtgatatgatatattttaaatgaagttttcaaga 49726591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 49726457 - 49726489
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatca 196  Q
    |||||||||||||||||||||||||||||||||    
T  49726457 ttttaaaatttgacagttttggtccctccatca 49726489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 14741939 - 14742026
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatca 196  Q
    |||||||||||||| ||| |||||||||||||| |||||  ||||| ||||| |  |||||||||   |||||||||||| |||||||    
T  14741939 ttaattgcagttttggtccccctattttcaccactttgcaaaattggtccctctaatttaaaattcatcagttttggtccttccatca 14742026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 39492595 - 39492528
Alignment:
Q  130 cctattttcaccattttgcggaattgat-cccttgttttaaaatttgacagttttggtccctccatca 196  Q
    ||||||||||||||||||| |||||| | ||| | |||||| ||| | ||||||||||||||||||||    
T  39492595 cctattttcaccattttgcagaattggtccccgtattttaacattcgtcagttttggtccctccatca 39492528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 38018537 - 38018443
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatattt 203  Q
    |||||||||||||| ||| ||||||||||  ||||||   |||||| || || | ||||||||||||||| |||||||||||  || ||||||||    
T  38018537 ttaattgcagttttggtccccctattttcttcattttatagaattggtctctctattttaaaatttgacaattttggtccctatattaaatattt 38018443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 289 - 342
Target Start/End: Complemental strand, 49519239 - 49519185
Alignment:
Q  289 atcatataccaattcatttaaaacatatcacatccccaa-tttttagttaaaaaa 342  Q
    |||||||| ||  ||||||||||||||||||||| |||| |||||||||||||||    
T  49519239 atcatatatcacatcatttaaaacatatcacatcaccaattttttagttaaaaaa 49519185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 367 - 443
Target Start/End: Complemental strand, 14742002 - 14741925
Alignment:
Q  367 attttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaagcct-atatttatt 443  Q
    |||||||| ||| |||||||| | | |||| |||||||||||| |||||||||| || ||||||| || |||||||||    
T  14742002 attttaaattagagggaccaattttgcaaagtggtgaaaatagggggaccaaaactgcaattaagactaatatttatt 14741925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 38256894 - 38256830
Alignment:
Q  179 gttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagttt 244  Q
    |||||||||||||  | ||||||||| |||||||||||||||||  ||||||||| ||| ||||||    
T  38256894 gttttggtccctcatttaaatatttgatctaaaatatggtgata-aatatgttttaaatgaagttt 38256830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 684 - 737
Target Start/End: Original strand, 45541667 - 45541720
Alignment:
Q  684 aacagtctagcaaatgtttatagcattaaataacctcaaataagtcaaaccaaa 737  Q
    ||||||||  ||| |||||||| |||||||||| |||||||||||||| |||||    
T  45541667 aacagtcttacaagtgtttataccattaaataagctcaaataagtcaatccaaa 45541720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 2e-36; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 110 - 430
Target Start/End: Complemental strand, 37327627 - 37327296
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtct 208  Q
    |||||||||||||| |||  ||  |||||| ||||||||| ||||| ||||  | |||||||||| |||| |||||||||||| ||||||| ||| ||||    
T  37327627 ttaattgcagttttggtcctccacttttcatcattttgcgaaattggtccccctattttaaaattggacaattttggtccctctatcaaattttttgtct 37327528  T
Q  209 aaaatatggtgatatgatatgttttcaattaagtttttaagagaa--------caatttcatcgatgttgatatgtttccatcatcacatcatataccaa 300  Q
    ||||||| |||||||||||| |||| ||| ||||||| |||||||        |||||| ||||||||| || | ||| |||  ||| ||||||| |||     
T  37327527 aaaatattgtgatatgatatattttaaatgaagttttcaagagaattttgttgcaattttatcgatgttaatcttttttcattttcagatcatattccac 37327428  T
Q  301 ttcatttaaaacatatcacatccccaatttttagttaaaaaatatg-tgga-agaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaat 398  Q
      |||||||||  ||||||||| |  |||| || || ||||||||| | || ||||||||||||||  ||||||||||||||||||||  ||| ||||||    
T  37327427 gacatttaaaatttatcacatcacatatttataattcaaaaatatgatagagagaccaaaattgtcgaattttaaaatagggggaccatttctgcaaaat 37327328  T
Q  399 ggtgaaaatagtgggaccaaaattgtaattaa 430  Q
    ||||||||||| |||| ||||| || ||||||    
T  37327327 ggtgaaaatagggggatcaaaactgcaattaa 37327296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 109 - 249
Target Start/End: Original strand, 4965340 - 4965478
Alignment:
Q  109 tttaattgcagttttagtctccctattttcaccattttgcggaattgatcc-cttgttttaaaatttgacagttttggtccctccatcaaatatttggtc 207  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||||| ||| ||| |||||||| ||||||||||||||||||| ||||||||||||||     
T  4965340 tttaattgcagttttggtccccctattttcaacattttgcggaattggtccgcttattttaaaacttgacagttttggtccctcaatcaaatatttggt- 4965438  T
Q  208 taaaatatggtgatatgatatgttttcaattaagtttttaag 249  Q
       ||||||||||||  | ||||||| ||| |||||||||||    
T  4965439 --taatatggtgatacaacatgttttaaataaagtttttaag 4965478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 110 - 433
Target Start/End: Complemental strand, 29366681 - 29366347
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtct 208  Q
    |||||||||||||| ||| | ||||||||| || |||||  ||||||| ||| | |||||| |||||||| ||||||||  || ||||||||||| ||||    
T  29366681 ttaattgcagttttggtccctctattttcatcaatttgcaaaattgattcctctattttaatatttgacaattttggtcattctatcaaatattttgtct 29366582  T
Q  209 aaaatatggtgatatgatatgttttcaattaagtttttaagaga--------acaatttcatcgatgttgatatgtttccatcatcacatcatataccaa 300  Q
    ||||||| ||||||||||||||||| ||| ||||||| || | |        |||||||||||||||||||||  ||| |||| ||| ||||||| |||     
T  29366581 aaaatattgtgatatgatatgttttaaataaagttttcaacataattttgttacaatttcatcgatgttgataatttttcatcttcaaatcatattccat 29366482  T
Q  301 ttcatttaaaacatatcacatccccaatttttagttaaaaaatatgtggaa--gaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaat 398  Q
      |||||||||  ||||||||| |   ||| | ||| ||||||||   |||  |||||||  | ||  ||||||||||| ||||||||| | | ||||||    
T  29366481 gacatttaaaatttatcacatcacatttttatggttcaaaaatataatgaagggaccaaacctatcgaattttaaaatatggggaccaattttgcaaaat 29366382  T
Q  399 ggtgaaaatagtgggaccaaaattgtaattaagcc 433  Q
     |||||||||| |||||||||| |  |||||||||    
T  29366381 tgtgaaaatagggggaccaaaactacaattaagcc 29366347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 110 - 245
Target Start/End: Original strand, 44857820 - 44857952
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatcccttgttttaaaatttgacagttttggtccctccatcaaatatttggtcta 209  Q
    ||||||| |||||| | | |||||||||||   ||||||| ||||||||||    ||||||||| |||| ||||| |||||||||||||||||| |||||    
T  44857820 ttaattgaagttttggcccccctattttca---ttttgcgaaattgatccccctatttaaaattcgacaattttgttccctccatcaaatatttagtcta 44857916  T
Q  210 aaatatggtgatatgatatgttttcaattaagtttt 245  Q
    |||||| ||||| ||||||||||| ||| |||||||    
T  44857917 aaatattgtgatttgatatgttttaaatgaagtttt 44857952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 110 - 245
Target Start/End: Complemental strand, 3565700 - 3565564
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatc-ccttgttttaaaatttgacagttttggtccctccatcaaatatttggtct 208  Q
    |||||||||||||| ||   ||||||||||| |||||||  ||||| |  || ||||||| |||| ||||||||||| ||||| ||| ||||||| ||||    
T  3565700 ttaattgcagttttggttctcctattttcactattttgcaaaattggtttccctgttttataattcgacagttttggaccctctatctaatattttgtct 3565601  T
Q  209 aaaatatggtgatatgatatgttttcaattaagtttt 245  Q
    ||||||||||||||| | ||||||| ||| |||||||    
T  3565600 aaaatatggtgatataacatgttttaaatgaagtttt 3565564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 126 - 408
Target Start/End: Complemental strand, 40744698 - 40744404
Alignment:
Q  126 tctccctattttcaccattttgcggaattgatc-ccttgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatg 224  Q
    ||||| |||||||||||||||  | |||||||| || ||||||||||||| | || ||||  || | ||||||||||||||| |||||||||||||||||    
T  40744698 tctccatattttcaccattttatgaaattgatctccctgttttaaaatttcaaaggtttgaccctttcatcaaatatttggtttaaaatatggtgatatg 40744599  T
Q  225 atatgttttcaattaag---tttttaagaga-------acaatttcatcgatgttgatatgtttccatcatcacatcatataccaattcatttaaaacat 314  Q
    | ||||||| ||| |||   |||||| || |       |  |||||||| ||| |||||| ||| ||||||||    |||||||| ||||||| ||| ||    
T  40744598 acatgttttaaatgaagtgttttttaggaaattgttttatgatttcatcaatgctgatattttttcatcatca---tatataccacttcattttaaatat 40744502  T
Q  315 atcacatccccaa---tttttagttaaaaaatatgtggaag--accaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaata 408  Q
    ||||| || | ||   |||||||||||||||||||  ||||  |||||||||||||||||| |||||||| |  |||||||  |||||| |||||||||    
T  40744501 atcacgtcactaattttttttagttaaaaaatatgacgaaggaaccaaaattgtcagatttcaaaataggagagccaaatccacaaaat-gtgaaaata 40744404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 164 - 295
Target Start/End: Original strand, 20896320 - 20896461
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatat--ttggtctaaaatatggtgatatgatatgttttcaattaagttttt-aagaga-------a 253  Q
    |||||||||| || | |||||||||||| |||| ||||  || ||||||||||| ||||||||||||||||| ||| |||||||| |||| |       |    
T  20896320 ttttaaaattcgataattttggtccctctatcacatataatttgtctaaaatattgtgatatgatatgttttaaatgaagtttttaaagaaattttgtta 20896419  T
Q  254 caatttcatcgatgttgatatgtttccatcatcacatcatat 295  Q
    ||||||||||||||||||||| |||| ||| |||||||||||    
T  20896420 caatttcatcgatgttgatatttttctatcttcacatcatat 20896461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 45871762 - 45871846
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaa 248  Q
    ||||||||||  |||||||||||||||| ||  ||||||| ||||||||||||||||||| | ||||||| ||| ||||||||||    
T  45871762 ttttaaaattcaacagttttggtccctctatataatattttgtctaaaatatggtgatataacatgttttaaatgaagtttttaa 45871846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 431
Target Start/End: Original strand, 23415960 - 23416214
Alignment:
Q  181 tttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaagagaac--------aatttcatcgatgttgat 272  Q
    ||||||||||| ||||||||||| ||||||||||  ||||||||||  ||||| ||| |||||||||||| ||         |||||||||||||||||     
T  23415960 tttggtccctcaatcaaatattttgtctaaaatactgtgatatgat--gttttaaatgaagtttttaagaaaattttgttataatttcatcgatgttgaa 23416057  T
Q  273 atgtttccatcatcacatcatataccaattcatttaaaacatatcacatccccaatttttagttaaaaaatatgtggaagaccaaaattgtcagatttta 372  Q
    || |||||||||||| || |||| |||   ||||||| |  ||||  |||     ||| ||||| |||||||||  |  |||||||| ||||| ||||||    
T  23416058 atttttccatcatcagattatattccatgacatttaagatttatctaatcatatttttatagttcaaaaatatggagg-gaccaaaactgtcaaatttta 23416156  T
Q  373 aaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaag 431  Q
    ||||||||| |||||| || |||||||||||||||||  |||||| || || |||||||    
T  23416157 aaatagggg-accaaaactgcaaaatggtgaaaatagaaggaccagaactgcaattaag 23416214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 42055286 - 42055371
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatcccttgttttaaaatttgacagttttggtccctccatca 196  Q
    |||||||||||||| ||| ||||||||| |||||||||  |||||| |||||| ||||||||||||||||||||  ||||| |||||    
T  42055286 ttaattgcagttttggtc-ccctatttttaccattttgtagaattggtcccttattttaaaatttgacagttttaatcccttcatca 42055371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 44858145 - 44858051
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatcccttgttttaaaatttgacagttttggtccctccatcaaatatttg 204  Q
    ||||||||||||||  || ||||||||| ||||||||||  ||| |  ||| | |||||||||||||||||||||||||||| ||||||| ||||    
T  44858145 ttaattgcagttttgatccccctatttttaccattttgcaaaatggtccccctattttaaaatttgacagttttggtccctctatcaaatttttg 44858051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 23416213 - 23416129
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatcccttgttttaaaatttgacagttttggtccctccat 194  Q
    |||||||||||| | |||   |||||||||||||||||| |  ||| |||| | |||||||||||||||||||||||||||||||    
T  23416213 ttaattgcagttctggtccttctattttcaccattttgcagttttggtcccctattttaaaatttgacagttttggtccctccat 23416129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 46303836 - 46303755
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttt 245  Q
    |||||||||| |||| |||||||||||| |||| || |||  |||||||||| ||||| ||||||||||| ||| |||||||    
T  46303836 ttttaaaattcgacaattttggtccctctatcatatgttttatctaaaatattgtgatgtgatatgttttaaatgaagtttt 46303755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 367 - 423
Target Start/End: Original strand, 4965538 - 4965594
Alignment:
Q  367 attttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattg 423  Q
    |||| |||||||| ||||||||||  ||||||||||||||||| |||||||||||||    
T  4965538 atttaaaaataggaggaccaaatccgcaaaatggtgaaaatagggggaccaaaattg 4965594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 352 - 443
Target Start/End: Original strand, 29366603 - 29366694
Alignment:
Q  352 gaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaagcctatatttatt 443  Q
    |||||||||||||| || ||||||||| || | ||| | | |||| || ||||||||| |||||||||| || ||||||||||| |||||||    
T  29366603 gaccaaaattgtcaaatattaaaatagaggaatcaattttgcaaattgatgaaaatagagggaccaaaactgcaattaagcctaaatttatt 29366694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 37327292 - 37327383
Alignment:
Q  106 tggtttaattgcagttttagtctccctattttcaccattttgcggaattgat-cccttgttttaaaatttgacagttttggtccctccatca 196  Q
    ||||||||||||||||||  || |||||||||||||||||||| ||| || | ||| | |||||||||| |||| |||||||| ||| ||||    
T  37327292 tggtttaattgcagttttgatccccctattttcaccattttgcagaaatggtccccctattttaaaattcgacaattttggtctctctatca 37327383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 352 - 435
Target Start/End: Original strand, 44858068 - 44858150
Alignment:
Q  352 gaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaagccta 435  Q
    |||||||| ||||| ||||||||||||||||||| | | | ||||||||| ||||||| |||| ||||| || |||||||||||    
T  44858068 gaccaaaactgtcaaattttaaaatagggggacc-attttgcaaaatggtaaaaatagggggatcaaaactgcaattaagccta 44858150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 11753040 - 11752917
Alignment:
Q  109 tttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtc 207  Q
    ||||||||||||||| ||||   | ||||||| || ||||||||||||||  | | ||||||||||||||| ||  | ||| |||||||||||||| |||    
T  11753040 tttaattgcagttttggtctt--tgttttcacaatattgcggaattgatctgtctattttaaaatttgacaattcagatccatccatcaaatattttgtc 11752943  T
Q  208 taaaatatggtgatatgatatgtttt 233  Q
    |||| ||| ||||||| | |||||||    
T  11752942 taaattatagtgatataacatgtttt 11752917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 248
Target Start/End: Complemental strand, 26472138 - 26471997
Alignment:
Q  106 tggtttaattgcagttttagtctccctattttcaccattttgcggaattgatcccttgttttaaaatttgacagttttggtccctccatcaaatatttgg 205  Q
    |||||| |||||||||||  || |||| ||||||||||||| |  | ||| |||| |  ||||||||| |||||||||| |||||  ||  ||||||| |    
T  26472138 tggtttgattgcagttttgatccccctgttttcaccattttccaaatttggtcccct-atttaaaattcgacagttttgatccctttatataatattttg 26472040  T
Q  206 tctaaaatatggtgatatgatatgttttcaattaagtttttaa 248  Q
     |||||||||| |||||| |||| |||| ||| ||||||||||    
T  26472039 actaaaatatgatgatataatatattttaaatgaagtttttaa 26471997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 248
Target Start/End: Complemental strand, 26548578 - 26548437
Alignment:
Q  106 tggtttaattgcagttttagtctccctattttcaccattttgcggaattgatcccttgttttaaaatttgacagttttggtccctccatcaaatatttgg 205  Q
    |||||| |||||||||||  || |||| ||||||||||||| |  | ||| |||| |  ||||||||| |||||||||| |||||  ||  ||||||| |    
T  26548578 tggtttgattgcagttttgatccccctgttttcaccattttccaaatttggtcccct-atttaaaattcgacagttttgatccctttatataatattttg 26548480  T
Q  206 tctaaaatatggtgatatgatatgttttcaattaagtttttaa 248  Q
     |||||||||| |||||| |||| |||| ||| ||||||||||    
T  26548479 actaaaatatgatgatataatatattttaaatgaagtttttaa 26548437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 39751232 - 39751290
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgata 222  Q
    ||||||||||  ||| ||||||||| |||||||||||||| || |||||||||||||||    
T  39751232 ttttaaaattctacaattttggtccttccatcaaatattttgtttaaaatatggtgata 39751290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 17298695 - 17298780
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaag 249  Q
    |||||||||||||||  | || || ||| ||||||||||||||||||||||||  | ||||| ||||||| ||| |||||| ||||    
T  17298695 ttttaaaatttgacaactctgatctctctatcaaatatttggtctaaaatatgaaggtatgacatgttttgaatgaagtttgtaag 17298780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 214
Target Start/End: Complemental strand, 36742297 - 36742192
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtct 208  Q
    ||||||| | ||||| || ||||||||||| || |||||  ||||| ||||| | ||||||||||| ||||||||||||| | |||||| |||||| | |    
T  36742297 ttaattgtaattttaatccccctattttcatcaatttgcaaaattggtccctatattttaaaatttaacagttttggtcctttcatcaactatttgcttt 36742198  T
Q  209 aaaata 214  Q
    ||||||    
T  36742197 aaaata 36742192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 2449569 - 2449511
Alignment:
Q  188 cctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagttttt 246  Q
    ||||||| ||||||||||| |||||||| | |||||||| |||||| ||| ||||||||    
T  2449569 cctccattaaatatttggtataaaatatagcgatatgatgtgttttaaatgaagttttt 2449511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 29366341 - 29366431
Alignment:
Q  101 atttatggtttaattgcagttttagtctccctattttcaccattttgcggaattgat-cccttgttttaaaatttgacagttttggtccct 190  Q
    |||||||| ||||||| |||||| ||| |||||||||||| |||||||  ||||| | ||| | |||||||||| || || ||||||||||    
T  29366341 atttatggcttaattgtagttttggtccccctattttcacaattttgcaaaattggtccccatattttaaaattcgataggtttggtccct 29366431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 110 - 341
Target Start/End: Original strand, 26767619 - 26767858
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatcccttgttttaaaatttgacagttttggtccctccatcaaatatttggtcta 209  Q
    |||||||||||||| |||||||||||||||||||||||   ||||| |||| | |||||||||||||||||||||||||||| ||   |||||| |||||    
T  26767619 ttaattgcagttttggtctccctattttcaccattttgtaaaattgttcccctattttaaaatttgacagttttggtccctctatattatattttgtcta 26767718  T
Q  210 aaatatggtgatatgatatgttttcaattaagtttttaagaga--------acaatttcatcgatgttgatatgtttccatcatcacatcatataccaat 301  Q
    ||||||| |||||| | ||||| | ||| |||||||||||| |        |  |||| |||||||||||||| ||  |||| ||| ||||||||||||     
T  26767719 aaatatgatgatataacatgttctaaatgaagtttttaagaaagttttcttatgattttatcgatgttgatattttctcatcttcatatcatataccaag 26767818  T
Q  302 tcatttaaaacatatcacatccccaatttttagttaaaaa 341  Q
     |||||||||| ||||||||| ||  ||||||||||||||    
T  26767819 acatttaaaacctatcacatcacctctttttagttaaaaa 26767858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 119 - 434
Target Start/End: Complemental strand, 43671017 - 43670692
Alignment:
Q  119 gttttagtctccctattttcaccattttgcggaattgatcccttgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggt 218  Q
    ||||||||  ||||||||||| ||||||||| ||||| || ||| |||||||||| |||| ||||| |||||| || | |||||| ||||||||||| ||    
T  43671017 gttttagttcccctattttcatcattttgcgaaattgttctcttattttaaaattcgacaattttgatccctctattacatattttgtctaaaatattgt 43670918  T
Q  219 gatatgatatgttttcaattaagtttttaagaga--------acaatttcatcgatgttgatatgtttccatcatcacatcatataccaattcatttaaa 310  Q
    ||||  ||||||||| ||| ||||||||||| ||        |||||||||||||||||||||| |||| ||| ||| ||||||| |||   ||||||||    
T  43670917 gatactatatgtttttaatgaagtttttaagggaattttgttacaatttcatcgatgttgatatttttctatcttcatatcatattccacgacatttaaa 43670818  T
Q  311 acatatcacatccccaatttttagttaaaaaatatg-tgga-agaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaata 408  Q
    |  ||||||||| |    || ||||| ||| ||||| ||||  |||||| |  |||  ||||||||||||| ||||||| | | |||||  |||||||||    
T  43670817 atttatcacatcacactcttatagttcaaatatatgatggagggaccaagacagtcgaattttaaaataggaggaccaattttgcaaaagagtgaaaata 43670718  T
Q  409 gtgggaccaaaattgtaattaagcct 434  Q
    | |||||||||| || ||||||||||    
T  43670717 gggggaccaaaactgcaattaagcct 43670692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 105 - 433
Target Start/End: Complemental strand, 38276089 - 38275753
Alignment:
Q  105 atggtttaattgcagttttagtctccctattttcaccattttgcggaattgatcccttgttttaaaatttgacagttttggtccctccatcaaatatttg 204  Q
    |||| |||||||||||||| ||| ||||||||  | ||||||||| ||||| ||| || ||||||||||  ||| |||||||||||  ||||||||| |     
T  38276089 atggcttaattgcagttttggtccccctatttatatcattttgcgaaattggtcc-ttattttaaaattcaacaattttggtccctttatcaaatatgtt 38275991  T
Q  205 gtctaaaatatggtgatatgatatgttttcaattaagtttttaagagaa-------caatttcatcgatgttgatatgtttccatcatcacatcatatac 297  Q
    ||||||||||| ||||||||||||||||| ||| ||||||| ||| |||       ||| |||||| |||||||| |  || |||| ||| ||  ||| |    
T  38275990 gtctaaaatattgtgatatgatatgttttaaatgaagttttcaagggaattcgcctcaacttcatcaatgttgatcttctttcatcttcagattgtattc 38275891  T
Q  298 caattcatttaaaacatatcacatccccaatttttagttaaaaaatatg-tgga-agaccaaaattgtcagattttaaaatagggggaccaaatcttcaa 395  Q
    ||   |||||||||  ||||||||| |   ||| ||||| ||||||||| ||||  ||||||||   ||  ||||||||||||||| ||||| ||  |||    
T  38275890 catgacatttaaaatttatcacatcacatttttatagttcaaaaatatgatggagggaccaaaaccatcgaattttaaaataggggtaccaactcggcaa 38275791  T
Q  396 aatggtgaaaatagtgggaccaaaattgtaattaagcc 433  Q
    |||||||||||||| |||||||||  || |||||||||    
T  38275790 aatggtgaaaatagggggaccaaatatgcaattaagcc 38275753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 24263966 - 24264045
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtt 243  Q
    ||||||||||||||||||||||||  ||||| ||||| ||| |||||||||||||||||||||||||||| ||| |||||    
T  24263966 ttttaaaatttgacagttttggtcggtccattaaatacttgatctaaaatatggtgatatgatatgttttaaatgaagtt 24264045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 107 - 248
Target Start/End: Complemental strand, 43345099 - 43344959
Alignment:
Q  107 ggtttaattgcagttttagtctccctattttcaccattttgcggaattgatccc-ttgttttaaaatttgacagttttggtccctccatcaaatatttgg 205  Q
    ||||||||||||||| | ||||||| ||||||  | ||||||  |||||||||| || |||||||||| |||| |||| ||||||  || |||||||  |    
T  43345099 ggtttaattgcagttcttgtctcccaattttcttcgttttgctaaattgatccccttattttaaaattcgacaattttagtccctatatgaaatatt--g 43345002  T
Q  206 tctaaaatatggtgatatgatatgttttcaattaagtttttaa 248  Q
    |||||||||| ||||||||||||||||| ||| ||||||||||    
T  43345001 tctaaaatattgtgatatgatatgttttaaatgaagtttttaa 43344959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 43416251 - 43416367
Alignment:
Q  131 ctattttcaccattttgcggaattgatcccttgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgt 230  Q
    ||||||||||||||||||  |||||||||  |||||||||||  ||||||||||||||||| ||  |||| || ||||||||||||||||||| | ||||    
T  43416251 ctattttcaccattttgcaaaattgatcctctgttttaaaatc-gacagttttggtccctctatttaataatttgtctaaaatatggtgatataacatgt 43416349  T
Q  231 tttcaattaagtttttaa 248  Q
    ||| ||| || |||||||    
T  43416350 tttaaatgaaatttttaa 43416367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 417
Target Start/End: Original strand, 7191917 - 7192180
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaagaga--------aca 255  Q
    |||||||||| ||||||||||||||||  ||| || |||| ||||||||||||||||||| | ||||||| |||  |||||| ||  ||        ||     
T  7191917 ttttaaaattcgacagttttggtccctttatctaaaattttgtctaaaatatggtgatataacatgttttaaatggagttttcaaaggaattattttacg 7192016  T
Q  256 atttcatcgatgttgatatgtttccatcatcacatcatataccaattcatttaaaacatatcacatccccaatttttagttaaaaaatatg--tggaaga 353  Q
    ||||||||||||||||||| ||  |||| ||| |||||||| ||    ||||||||  ||||||||| ||  |||||||||||||||||||   |   ||    
T  7192017 atttcatcgatgttgatattttatcatcttcagatcatatatcatgatatttaaaatctatcacatcacctttttttagttaaaaaatatgacagaggga 7192116  T
Q  354 ccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggacca 417  Q
    |||||| ||||  ||||||||||||||||| ||| ||  || || | ||||||||| |||||||    
T  7192117 ccaaaactgtcgaattttaaaatagggggatcaattccacacaaagatgaaaatagggggacca 7192180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 12857546 - 12857465
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttt 245  Q
    |||||||||| |||| |||||||| ||| ||||||| ||| ||||| ||||| ||||||||||||||||| ||| |||||||    
T  12857546 ttttaaaattggacaattttggtctctctatcaaattttttgtctagaatattgtgatatgatatgttttaaatgaagtttt 12857465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 231
Target Start/End: Original strand, 27323375 - 27323498
Alignment:
Q  108 gtttaattgcagttttagtctccctattttcaccattttgcggaattgatc-ccttgttttaaaatttgacagttttggtccctccatcaaatatttggt 206  Q
    ||||||||| |||||| |||||| |||||||||||||||| | ||||| || || |||| ||||||| || |||||||||  ||| ||| |||| || ||    
T  27323375 gtttaattgtagttttggtctcc-tattttcaccattttgtgaaattggtctccctgttgtaaaattcgatagttttggtttctcaatctaataatttgt 27323473  T
Q  207 ctaaaatatggtgatatgatatgtt 231  Q
    |||||| |||||||||||| |||||    
T  27323474 ctaaaacatggtgatatgacatgtt 27323498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 5118962 - 5118899
Alignment:
Q  162 tgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatga 225  Q
    |||||||||||||||| ||| | | ||||||||||||||||||||||||| ||||| |||||||    
T  5118962 tgttttaaaatttgacggttatagcccctccatcaaatatttggtctaaattatggcgatatga 5118899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 188
Target Start/End: Original strand, 15061449 - 15061528
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatcc-cttgttttaaaatttgacagttttggtcc 188  Q
    ||||||||||||||  ||||| |||||||| |||||||  |||||||||| | | |||||||||||||||||||||||||    
T  15061449 ttaattgcagttttgatctccatattttcatcattttgtagaattgatcctcctattttaaaatttgacagttttggtcc 15061528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 254 - 430
Target Start/End: Complemental strand, 42508432 - 42508254
Alignment:
Q  254 caatttcatcgatgttgatatgtttccatcatcacatcatataccaattcatttaaaacatatcacatccccaatttttagttaaaaaatatgt-ggaag 352  Q
    |||||| |||||||||||| | |||| ||| ||| |||| || |||   |||||||||  ||||||||| |   ||| ||||| |||||||||  |||||    
T  42508432 caattttatcgatgttgatctttttctatcttcagatcaaattccacgacatttaaaatttatcacatcacatttttatagttcaaaaatatgacggaag 42508333  T
Q  353 -accaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaa 430  Q
     ||||||| ||||  ||||||||||||||||||||  |||  ||||||||||||||||  ||||||||| || ||||||    
T  42508332 gaccaaaactgtcgaattttaaaatagggggaccatttctgtaaaatggtgaaaataggaggaccaaaactgcaattaa 42508254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 45089985 - 45090070
Alignment:
Q  132 tattttcaccattttgcggaattgatcc-cttgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatg 216  Q
    |||||||||||||||  ||||||| | | | ||||||||||||| |||||||| || ||||||||||||||||||  |||||||||    
T  45089985 tattttcaccattttatggaattggttctcctgttttaaaattttacagttttagttcctccatcaaatatttggcataaaatatg 45090070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 15061714 - 15061639
Alignment:
Q  173 ttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaag 249  Q
    |||||| |||||||| |||  ||||||||||| |||| ||||| ||||||||||||||||| ||| |||||||||||    
T  15061714 ttgacaattttggtctctctgtcaaatatttg-tctagaatattgtgatatgatatgttttaaatgaagtttttaag 15061639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 367 - 435
Target Start/End: Complemental strand, 43344861 - 43344793
Alignment:
Q  367 attttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaagccta 435  Q
    ||||||||||||||||||||| ||| ||||||  ||||||||  | ||||||||||| |||||||||||    
T  43344861 attttaaaatagggggaccaattctgcaaaataatgaaaatatggagaccaaaattgcaattaagccta 43344793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 196
Target Start/End: Original strand, 38275748 - 38275843
Alignment:
Q  102 tttatggtttaattgcagttttagtctccctattttcaccattttgcggaattgat-cccttgttttaaaatttgacagttttggtccctccatca 196  Q
    ||||||| |||||||||  ||| ||| |||||||||||||||||||| || ||| | ||| | |||||||||| ||  ||||||||||||||||||    
T  38275748 tttatggcttaattgcatatttggtccccctattttcaccattttgccgagttggtacccctattttaaaattcgatggttttggtccctccatca 38275843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 188
Target Start/End: Original strand, 42508250 - 42508333
Alignment:
Q  106 tggtttaattgcagttttagtctccctattttcaccattttgcggaattgat-cccttgttttaaaatttgacagttttggtcc 188  Q
    |||||||||||||||||| |||  ||||||||||||||||| | ||| || | ||| | |||||||||| ||||||||||||||    
T  42508250 tggtttaattgcagttttggtcctcctattttcaccattttacagaaatggtccccctattttaaaattcgacagttttggtcc 42508333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 43670696 - 43670791
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatcc-cttgttttaaaatttgacagttttggtccctccatcaaatatttg 204  Q
    |||||||||||||| ||| ||||||||||||  ||||||  ||||| ||| | | |||||||||| ||| || ||||||||||||||| |||||||    
T  43670696 ttaattgcagttttggtccccctattttcactcttttgcaaaattggtcctcctattttaaaattcgactgtcttggtccctccatcatatatttg 43670791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 245
Target Start/End: Complemental strand, 27879713 - 27879579
Alignment:
Q  113 attgcagttttagtctccctattttc-accattttgcggaattgatcccttgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaa 211  Q
    |||| ||||||| |||| |||||||  ||||||||||  |||||||| ||  ||||||| |||||| |||||||||  | |||||||||||||||  |||    
T  27879713 attgtagttttaatctctctattttttaccattttgcataattgatctctctttttaaagtttgacggttttggtcgattcatcaaatatttggtaaaaa 27879614  T
Q  212 a-tatggtgatatgatatgttttcaattaagtttt 245  Q
    | ||| | ||||||| ||||||| ||| |||||||    
T  27879613 attatagggatatgacatgttttaaataaagtttt 27879579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 46561899 - 46561981
Alignment:
Q  169 aaatttgacagttttggtccctccatcaaatatt-tggtctaaaatatggtgatatgatatgttttcaattaagtttttaaga 250  Q
    |||||||||||||||||||||||||  ||| | | | ||||||||||| ||||||||| ||||||| ||| | ||||||||||    
T  46561899 aaatttgacagttttggtccctccaaaaaaaaatattgtctaaaatatcgtgatatgacatgttttaaatgatgtttttaaga 46561981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 437
Target Start/End: Complemental strand, 26767696 - 26767612
Alignment:
Q  352 gaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaagcctata 437  Q
    |||||||| ||||| ||||||||||||||| || || | | ||||||||||||||||| | |||||||| || |||||| ||||||    
T  26767696 gaccaaaactgtcaaattttaaaataggggaac-aattttacaaaatggtgaaaatagggagaccaaaactgcaattaaccctata 26767612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 44166731 - 44166647
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaag 249  Q
    |||||||||| |||| ||||| ||| |  ||||| | ||| ||||||||||| ||||||||||||||||| ||| |||||||||||    
T  44166731 ttttaaaattggacaattttgatcc-tgtatcaatttttttgtctaaaatattgtgatatgatatgttttaaataaagtttttaag 44166647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 44517690 - 44517774
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaa 248  Q
    |||||||||||||||  ||||||| ||| || ||||| ||||||||||||||| | ||||  |||||||||| | |||| |||||    
T  44517690 ttttaaaatttgacatgtttggtctctcaattaaatagttggtctaaaatatgataatattttatgttttcattgaagtctttaa 44517774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 590 - 623
Target Start/End: Complemental strand, 9572205 - 9572172
Alignment:
Q  590 ataaagttaaaatgcttttgtataagctataagc 623  Q
    ||||||||||| ||||||||||||||||||||||    
T  9572205 ataaagttaaattgcttttgtataagctataagc 9572172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 73; Significance: 8e-33; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 110 - 420
Target Start/End: Original strand, 21133 - 21453
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtct 208  Q
    ||||||||||||||  || || |||||| |  |||||||| ||||| ||||  | |||||||||| |||| |||||||||||| ||||||||||| ||||    
T  21133 ttaattgcagtttttatccccttattttaataattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctatcaaatattttgtct 21232  T
Q  209 aaaatatggtgatatgatatgttttcaattaagtttttaagagaa--------caatttcatcgatgttgatatgtttccatcatcacatcatataccaa 300  Q
    ||||||| ||| |||||||| |||| ||| ||||||| ||| |||        ||||||||| ||||||||| | |||||||| ||| ||||||| |||     
T  21233 aaaatattgtggtatgatat-ttttaaatgaagttttcaagggaattttgttacaatttcattgatgttgatctttttccatcttcatatcatattccac 21331  T
Q  301 ttcatttaaaacatatcacatccccaatttttagttaaaaaatatg-tggaag-accaaaattgtcagattttaaaatagggggaccaaatcttcaaaat 398  Q
      |||||||||  || |||||| |   ||| ||||| ||||||||| |||| | ||||||| ||||  ||||||||||||||||||||| ||| ||||||    
T  21332 gacatttaaaatttaccacatcacatttttatagttcaaaaatatgatggagggaccaaaactgtcgaattttaaaatagggggaccaattctgcaaaat 21431  T
Q  399 ggtgaaaatagtgggaccaaaa 420  Q
    ||||||||||| |||| |||||    
T  21432 ggtgaaaatagggggatcaaaa 21453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 21459 - 21376
Alignment:
Q  114 ttgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatca 196  Q
    ||||||||||  || |||||||||||||||||||| |||||| ||||  | |||||||||| ||||||||||||||||||||||    
T  21459 ttgcagttttgatccccctattttcaccattttgcagaattggtccccctattttaaaattcgacagttttggtccctccatca 21376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 8e-33; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 110 - 420
Target Start/End: Complemental strand, 12499344 - 12499024
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtct 208  Q
    ||||||||||||||  || || |||||| |  |||||||| ||||| ||||  | |||||||||| |||| |||||||||||| ||||||||||| ||||    
T  12499344 ttaattgcagtttttatccccttattttaataattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctatcaaatattttgtct 12499245  T
Q  209 aaaatatggtgatatgatatgttttcaattaagtttttaagagaa--------caatttcatcgatgttgatatgtttccatcatcacatcatataccaa 300  Q
    ||||||| ||| |||||||| |||| ||| ||||||| ||| |||        ||||||||| ||||||||| | |||||||| ||| ||||||| |||     
T  12499244 aaaatattgtggtatgatat-ttttaaatgaagttttcaagggaattttgttacaatttcattgatgttgatctttttccatcttcatatcatattccac 12499146  T
Q  301 ttcatttaaaacatatcacatccccaatttttagttaaaaaatatg-tggaag-accaaaattgtcagattttaaaatagggggaccaaatcttcaaaat 398  Q
      |||||||||  || |||||| |   ||| ||||| ||||||||| |||| | ||||||| ||||  ||||||||||||||||||||| ||| ||||||    
T  12499145 gacatttaaaatttaccacatcacatttttatagttcaaaaatatgatggagggaccaaaactgtcgaattttaaaatagggggaccaattctgcaaaat 12499046  T
Q  399 ggtgaaaatagtgggaccaaaa 420  Q
    ||||||||||| |||| |||||    
T  12499045 ggtgaaaatagggggatcaaaa 12499024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 164 - 436
Target Start/End: Original strand, 18879142 - 18879424
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaagagaa--------ca 255  Q
    ||||||||||  ||| |||||||| ||| || |||||||| ||||||||||  ||||||||||||||||| ||| ||||| | |||  ||        ||    
T  18879142 ttttaaaattcaacaattttggtcactctataaaatattttgtctaaaatactgtgatatgatatgttttaaatgaagttatcaaggaaaatttgttaca 18879241  T
Q  256 atttcatcgatgttgatatgtttccatcatcacatcatataccaattcatttaaaacatatcacatccccaatttttagttaaaaaatatg-tggaag-a 353  Q
    ||||||||||||||||| | |||||||| ||| ||||||| | |   ||| |||||  ||||| ||  |   ||||||||| ||||||||| |||| | |    
T  18879242 atttcatcgatgttgatctttttccatcttcagatcatattctacgacatataaaatttatcaaataacatttttttagttcaaaaatatgatggaggga 18879341  T
Q  354 ccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaagcctat 436  Q
    |||||||||||| |||||||| |||||||| ||| | | ||||||||||||||||| ||||||||||||| ||||||||||||    
T  18879342 ccaaaattgtcaaattttaaattagggggatcaattatgcaaaatggtgaaaatagggggaccaaaattgcaattaagcctat 18879424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 110 - 245
Target Start/End: Complemental strand, 44363453 - 44363317
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtct 208  Q
    |||||||||||||| ||| || |||||||| ||||||||| ||||| ||||  | |||||||||| |||| |||||||||||| || |||||||| ||||    
T  44363453 ttaattgcagttttggtccccttattttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctataaaatattttgtct 44363354  T
Q  209 aaaatatggtgatatgatatgttttcaattaagtttt 245  Q
    ||||||| ||||||||||||||||| ||| |||||||    
T  44363353 aaaatattgtgatatgatatgttttaaatgaagtttt 44363317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 252 - 431
Target Start/End: Complemental strand, 6216376 - 6216196
Alignment:
Q  252 aacaatttcatcgatgttgatatgtttccatcatcacatcatataccaattcatttaaaacatatcacatccccaatttttagttaaaaaatatg-tgga 350  Q
    ||||||||||||||||||||| | |||||||| ||| ||||||| |||   |||| ||||  ||||||||| ||  ||| ||||| ||||||||| ||||    
T  6216376 aacaatttcatcgatgttgatctttttccatcttcagatcatattccacgacattgaaaatttatcacatcacctttttatagttcaaaaatatgatgga 6216277  T
Q  351 ag-accaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaag 431  Q
     | ||||||| | ||  ||||||||||||||||||||| ||| |||| |||||||||||| ||||||||||||| |||||||    
T  6216276 gggaccaaaactatcgaattttaaaatagggggaccaattctgcaaagtggtgaaaatag-gggaccaaaattgcaattaag 6216196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 164 - 430
Target Start/End: Complemental strand, 1351541 - 1351266
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaagaga--------aca 255  Q
    ||||||||||  ||| |||||||||||| ||||||||||| ||||||||||| |||||||||| |||||| ||| || |||| |||  |        |||    
T  1351541 ttttaaaattcaacaattttggtccctctatcaaatattt-gtctaaaatattgtgatatgatttgttttaaatgaatttttcaaggaaattttgttaca 1351443  T
Q  256 atttcatcgatgttgatatgtttccatcatcacatcatataccaattcatttaaaacatatcacatccccaatttttagttaaaaaatatg-tgga-aga 353  Q
    ||||||||||||||||| | |||||||| ||| ||||||| |||    ||||||||  ||||||||| |   ||| ||||| ||||||||| | ||  ||    
T  1351442 atttcatcgatgttgatctttttccatcttcagatcatattccacgatatttaaaatttatcacatcacatttttatagttcaaaaatatgatagaggga 1351343  T
Q  354 ccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaa 430  Q
    |||||||||||  ||||||||||| ||| ||||| ||| |||| | ||||||||||  |||||||||||| ||||||    
T  1351342 ccaaaattgtcgaattttaaaataagggaaccaattctgcaaagttgtgaaaataggaggaccaaaattgcaattaa 1351266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 107 - 342
Target Start/End: Original strand, 43365795 - 43366038
Alignment:
Q  107 ggtttaattgcagttttagtctccctattttcaccattttgcggaattgatcc-cttgttttaaaatttgacagttttggtccctccatcaaatatttgg 205  Q
    |||||||||||||||||  || | ||||||| ||||||||||  ||||| ||| | | |||||||||| |||||||||||| |||| ||| ||||||| |    
T  43365795 ggtttaattgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttg 43365894  T
Q  206 tctaaaatatggtgatatgatatgttttcaattaagtttttaagaga--------acaatttcatcgatgttgatatgtttccatcatcacatcatatac 297  Q
    ||||||||||| |||| | | ||||||| ||| ||||||||||| ||        || |||||||||||||| |||| ||  |||  ||| |||||||||    
T  43365895 tctaaaatatgatgatgtaacatgttttaaatgaagtttttaagggaattttcttacgatttcatcgatgtttatattttctcatattcagatcatatac 43365994  T
Q  298 caattcatttaaaacatatcacatccccaatttttagttaaaaaa 342  Q
    ||   |||||||||| ||||||||| ||  |||||||||||||||    
T  43365995 cacaacatttaaaacctatcacatcacc-ttttttagttaaaaaa 43366038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 38435140 - 38435226
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaaga 250  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| | ||||||| ||| || |||||||||    
T  38435140 ttttaaaatttgacagttttggtccctccaccaaatgtttggtctaaaatatggtaatataacatgttttaaataaaatttttaaga 38435226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 44362911 - 44362998
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgat-cccttgttttaaaatttgacagttttggtccctccatca 196  Q
    |||||||||||||| ||| |||||||||||||||||||  |||||| | ||| |||||||||| | ||||||||||||||||||||||    
T  44362911 ttaattgcagttttggtccccctattttcaccattttgtagaattggtccccctgttttaaaactcgacagttttggtccctccatca 44362998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 253 - 437
Target Start/End: Complemental strand, 44363090 - 44362904
Alignment:
Q  253 acaatttcatcgatgttgatatgtttccatcatcacatcatataccaattcatttaaaacatatcacatccccaatttttagttaaaaaatatg-tggaa 351  Q
    |||||||||||||  ||||| | | | |||| ||| ||||||| |||   |||||||||  ||||||||| |   ||| ||||| ||||||||| ||||     
T  44363090 acaatttcatcgacattgatctttattcatcttcatatcatattccacgacatttaaaatttatcacatcacatttttatagttcaaaaatatgatggag 44362991  T
Q  352 g-accaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaagcctata 437  Q
    | ||||||| ||||   |||||||| ||||||||||| ||| ||||||||||||||||| |||||||||| || |||||||||||||    
T  44362990 ggaccaaaactgtcgagttttaaaacagggggaccaattctacaaaatggtgaaaatagggggaccaaaactgcaattaagcctata 44362904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 302 - 397
Target Start/End: Complemental strand, 7100678 - 7100581
Alignment:
Q  302 tcatttaaaacatatcacatccccaatttttagttaaaaaatatg-tgga-agaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaa 397  Q
    |||||||||||||||||||||  |||||||||||| ||||||||| |||| | || |||||||||||||||| |||||| | |||||||||| |||||    
T  7100678 tcatttaaaacatatcacatcatcaatttttagttcaaaaatatgatggacaaactaaaattgtcagattttgaaatagagcgaccaaatctacaaaa 7100581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 107 - 250
Target Start/End: Complemental strand, 40838177 - 40838033
Alignment:
Q  107 ggtttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttgg 205  Q
    |||||||||||| |||||||| | ||| || ||||||||| |  | |||| |||| | ||||||||| ||||||||||| || || || ||||||||| |    
T  40838177 ggtttaattgcaattttagtccctctacttacaccattttacaaagttgaaccctctattttaaaatgtgacagttttgatcacttcaacaaatatttag 40838078  T
Q  206 tctaaaatatggtgatatgatatgttttcaattaagtttttaaga 250  Q
    ||||||||||| |||||||| | ||||  ||| ||||||||||||    
T  40838077 tctaaaatatgatgatatgacaagtttaaaatgaagtttttaaga 40838033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 12499018 - 12499101
Alignment:
Q  114 ttgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatca 196  Q
    ||||||||||  || |||||||||||||||||||| |||||| ||||  | |||||||||| ||||||||||||||||||||||    
T  12499018 ttgcagttttgatccccctattttcaccattttgcagaattggtccccctattttaaaattcgacagttttggtccctccatca 12499101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 18879418 - 18879331
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgat-cccttgttttaaaatttgacagttttggtccctccatca 196  Q
    ||||||||| |||| ||| ||||||||||||||||||||  ||||||| ||| |  |||||||||||||| |||||||||||||||||    
T  18879418 ttaattgcaattttggtccccctattttcaccattttgcataattgatccccctaatttaaaatttgacaattttggtccctccatca 18879331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 15562168 - 15562252
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaa 248  Q
    |||||||||||||||||||||||||||| ||| |||| || ||||||||||  ||||||| | ||||||| | | ||||||||||    
T  15562168 ttttaaaatttgacagttttggtccctctatctaataatttgtctaaaatacagtgatataacatgttttaattgaagtttttaa 15562252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 352 - 436
Target Start/End: Original strand, 44363375 - 44363459
Alignment:
Q  352 gaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaagcctat 436  Q
    |||||||||||||  ||||||||||||||||||||| |   ||||||| ||||||||  |||||||||| || ||||||||||||    
T  44363375 gaccaaaattgtcgaattttaaaatagggggaccaatttcgcaaaatgatgaaaataaggggaccaaaactgcaattaagcctat 44363459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 6216522 - 6216420
Alignment:
Q  107 ggtttaattgcagttttagtctccctattttcaccattttgcggaattgatcccttgttttaaaatttgacagttttggtccctccatcaaatatttggt 206  Q
    ||||||| |||| |||| |||  |||||||| | ||||||||  ||||| |||| | |||||||||||||||  ||||||||||| ||||||||||| ||    
T  6216522 ggtttaactgcaattttggtcctcctatttttatcattttgcaaaattgttcccctattttaaaatttgacaactttggtccctctatcaaatattttgt 6216423  T
Q  207 cta 209  Q
    |||    
T  6216422 cta 6216420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 43306691 - 43306776
Alignment:
Q  165 tttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaagag 251  Q
    |||||||||||| |||| ||||||||| | |||||||||| | ||||| |||||||||||| |||||||  || |||||||||||||    
T  43306691 tttaaaatttgatagttatggtccctctaacaaatatttgatttaaaa-atggtgatatgacatgttttatatgaagtttttaagag 43306776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 237
Target Start/End: Original strand, 6216197 - 6216324
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtct 208  Q
    ||||||||| |||| ||| |||||||||||||| ||||| |||||| ||||  | |||||||||| || ||||||||||||||||||| || ||||  ||    
T  6216197 ttaattgcaattttggtc-ccctattttcaccactttgcagaattggtccccctattttaaaattcgatagttttggtccctccatcatatttttgaact 6216295  T
Q  209 aaaatatggtgatatgatatgttttcaat 237  Q
    | || | |||||| |||||  ||||||||    
T  6216296 ataaaaaggtgatgtgataaattttcaat 6216324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 36061292 - 36061223
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgtttt 233  Q
    |||||||||| |||| ||||||| |||| |||||| | ||  |||||||||| |||||||||||||||||    
T  36061292 ttttaaaattggacaattttggttcctctatcaaaaaatttatctaaaatattgtgatatgatatgtttt 36061223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 345
Target Start/End: Original strand, 51871754 - 51871842
Alignment:
Q  256 atttcatcgatgttgatatgtttccatcatcacatcatataccaattcatttaaaacatatcacatccccaatttttagttaaaaaatat 345  Q
    |||||||| |||||||||| ||  |||| ||| |||||||||||   || ||||||| |||||||| | |||||||||||||||||||||    
T  51871754 atttcatcaatgttgatattttatcatcttcatatcatataccacgacagttaaaacttatcacat-cacaatttttagttaaaaaatat 51871842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 1351265 - 1351353
Alignment:
Q  109 tttaattgcagttttagtctccctattttcaccattttgcggaattgat-cccttgttttaaaatttgacagttttggtccctccatca 196  Q
    |||||||||| |||| |||  ||||||||||| | ||||| |||||| | ||||| |||||||||| |||| |||||||||||| ||||    
T  1351265 tttaattgcaattttggtcctcctattttcacaactttgcagaattggttcccttattttaaaattcgacaattttggtccctctatca 1351353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 371 - 428
Target Start/End: Complemental strand, 40837945 - 40837889
Alignment:
Q  371 taaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaatt 428  Q
    ||||||||||| ||||||||   |||||||||||||||| ||||||||||||| ||||    
T  40837945 taaaataggggaaccaaatccataaaatggtgaaaatag-gggaccaaaattgcaatt 40837889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 3e-29; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 108 - 245
Target Start/End: Complemental strand, 39741599 - 39741461
Alignment:
Q  108 gtttaattgcagttttagtctccctattttcaccattttgcggaattgatc-ccttgttttaaaatttgacagttttggtccctccatcaaatatttggt 206  Q
    |||||||||||||||||||| | ||||||||| ||||||| | | |||||| |||| |||||||||| || | ||||| |||||| ||||||||||| ||    
T  39741599 gtttaattgcagttttagtccctctattttcatcattttgtgaatttgatctccttattttaaaattcgataattttgatccctctatcaaatattttgt 39741500  T
Q  207 ctaaaatatggtgatatgatatgttttcaattaagtttt 245  Q
    ||||||||| ||||||||||||||||| ||| |||||||    
T  39741499 ctaaaatattgtgatatgatatgttttaaatgaagtttt 39741461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 107 - 251
Target Start/End: Complemental strand, 13639698 - 13639553
Alignment:
Q  107 ggtttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttgg 205  Q
    ||||||||| ||||||| ||| |  |||||||| ||||||||  ||||| ||||  | ||||||||||  | | |||||||||||| |||| |||||| |    
T  13639698 ggtttaattacagttttggtccctttattttcatcattttgcaaaattggtccccctattttaaaattctaaaattttggtccctctatcatatattttg 13639599  T
Q  206 tctaaaatatggtgatatgatatgttttcaattaagtttttaagag 251  Q
    |||||||||| ||||||||||||||||| ||| |||||||||||||    
T  13639598 tctaaaatattgtgatatgatatgttttaaatgaagtttttaagag 13639553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 354 - 434
Target Start/End: Original strand, 3577779 - 3577859
Alignment:
Q  354 ccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaagcct 434  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| || || |||||||    
T  3577779 ccaaaactgtcaaattttaaaatagggggaccaattcttcaaaatggtgaaaatagagggactaaaactgcaaataagcct 3577859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 13361004 - 13361122
Alignment:
Q  131 ctattttcaccattttgcggaattgatc-ccttgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatg 229  Q
    |||||||||  |||||||| |||||||| |||| |||||||||| |||| ||||| || ||| |||| |||||| ||||||||||| |||||| ||||||    
T  13361004 ctattttcattattttgcgaaattgatctccttattttaaaattcgacaattttgatctctctatcacatattttgtctaaaatattgtgatacgatatg 13361103  T
Q  230 ttttcaattaagtttttaa 248  Q
    |||| ||| || |||||||    
T  13361104 ttttaaatgaaatttttaa 13361122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 3577596 - 3577677
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttt 245  Q
    |||||||||| |||| ||||||| |||| ||||||||||| ||||||||| | ||||||||||||||||| ||| |||||||    
T  3577596 ttttaaaattcgacaattttggtacctctatcaaatattttgtctaaaattttgtgatatgatatgttttaaatgaagtttt 3577677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 5548143 - 5548229
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaaga 250  Q
    |||||||||| |||| |||||||||||  ||||||||||| ||||||||||| | ||| ||||||||||| ||| || |||||||||    
T  5548143 ttttaaaattcgacaattttggtccctttatcaaatattttgtctaaaatattgagatgtgatatgttttaaatgaaatttttaaga 5548229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 245
Target Start/End: Original strand, 30223781 - 30223918
Alignment:
Q  107 ggtttaattgcagttttagtctccctattttcaccattttgcggaattgatcccttg-ttttaaaatttgacagttttggtccctccatcaaatatttgg 205  Q
    |||||||||| ||||||  || |||| |||||| ||||||||| ||||| |||||   |||| ||||| |||||||||||||| || ||||||||||| |    
T  30223781 ggtttaattgtagttttgatc-cccttttttcatcattttgcgaaattggtccctcaatttttaaattcgacagttttggtccatctatcaaatattttg 30223879  T
Q  206 tctaaaatatggtgatatgatatgttttcaattaagtttt 245  Q
    |||||||||| || |||| | ||||||| ||| |||||||    
T  30223880 tctaaaatattgttatatca-atgttttaaatgaagtttt 30223918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 3577851 - 3577779
Alignment:
Q  114 ttgcagttttagtctccctattttcaccattttgcggaattgat-cccttgttttaaaatttgacagttttgg 185  Q
    |||||||||||||| | |||||||||||||||||  |||||| | ||| | ||||||||||||||||||||||    
T  3577851 ttgcagttttagtccctctattttcaccattttgaagaattggtccccctattttaaaatttgacagttttgg 3577779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 431
Target Start/End: Complemental strand, 11488925 - 11488849
Alignment:
Q  355 caaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaag 431  Q
    ||||||||||   |||||||||||||||||||| || |||||| | | |||||||  ||||||||||||||||||||    
T  11488925 caaaattgtcgagttttaaaatagggggaccaattcctcaaaaagataaaaatagaaggaccaaaattgtaattaag 11488849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 14626502 - 14626418
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaa 248  Q
    |||||||||  |||| ||||| | |||| |||| |||||| ||||||||||  ||||||||||||||||| ||| ||||||||||    
T  14626502 ttttaaaatccgacaattttgattcctctatcacatattttgtctaaaatactgtgatatgatatgttttaaatgaagtttttaa 14626418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 367 - 430
Target Start/End: Original strand, 13639632 - 13639695
Alignment:
Q  367 attttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaa 430  Q
    ||||||||||||||||||||| | | ||||||| ||||||||  |||||||||| |||||||||    
T  13639632 attttaaaatagggggaccaattttgcaaaatgatgaaaataaagggaccaaaactgtaattaa 13639695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 246
Target Start/End: Original strand, 37510258 - 37510344
Alignment:
Q  159 ccttgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagttttt 246  Q
    |||| ||||||||||||||||||||| |  | | |||||||||| ||||||||||||| |||||||| |||||||  || ||||||||    
T  37510258 ccttattttaaaatttgacagttttgatttc-ctatcaaatattaggtctaaaatatgatgatatgacatgttttatatgaagttttt 37510344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 354 - 430
Target Start/End: Complemental strand, 14626277 - 14626201
Alignment:
Q  354 ccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaa 430  Q
    |||||| ||||| ||||||||||||| ||||||| |||  ||||  |||||||||  |||||||||| |||||||||    
T  14626277 ccaaaactgtcaaattttaaaataggaggaccaattctgtaaaaaagtgaaaataaagggaccaaaactgtaattaa 14626201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 19895520 - 19895445
Alignment:
Q  107 ggtttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttt 182  Q
    |||||||||||| ||||  | |||||||||||| ||||||||| ||||||||||| | |||||||||||| ||||||    
T  19895520 ggtttaattgcaattttgat-tccctattttcatcattttgcgaaattgatccctctattttaaaatttgtcagttt 19895445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 30968810 - 30968894
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaa 248  Q
    |||| |||||||| ||||||  | |||| ||||||| |||||| ||||||||| | |||||||||||||| ||| || |||||||    
T  30968810 ttttgaaatttgatagttttaattcctcaatcaaatgtttggtttaaaatatgataatatgatatgttttaaataaaatttttaa 30968894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 14626198 - 14626287
Alignment:
Q  107 ggtttaattgcagttttagtctccctattttcaccattttgcggaattgatcc-cttgttttaaaatttgacagttttggtccctccatc 195  Q
    ||||||||| ||||||| ||| |  |||||||||  |||| | |||||| ||| | | |||||||||||||||||||||| |||||||||    
T  14626198 ggtttaattacagttttggtccctttattttcacttttttacagaattggtcctcctattttaaaatttgacagttttggcccctccatc 14626287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 403 - 436
Target Start/End: Complemental strand, 31472074 - 31472041
Alignment:
Q  403 aaaatagtgggaccaaaattgtaattaagcctat 436  Q
    ||||||| ||||||||||||||||||||||||||    
T  31472074 aaaatagggggaccaaaattgtaattaagcctat 31472041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 109 - 434
Target Start/End: Complemental strand, 28587946 - 28587611
Alignment:
Q  109 tttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtc 207  Q
    |||| |||||||||| ||| |||||||||||||||||||   | |||  |||  | |||||||||| |||||||||||||||||  |  ||||| | | |    
T  28587946 tttatttgcagttttggtccccctattttcaccattttgtaaatttggcccccctattttaaaattcgacagttttggtccctctttataatatcttgac 28587847  T
Q  208 taaaatatggtgatatgatatgttttcaattaagtttttaagagaa--------caatttcatcgatgttgatatgtttccatcatcacatcatatacca 299  Q
    ||||||||| |||||| | ||||||| ||| ||||||||||   ||        |||||| |||||| || | || ||  |||| ||| ||||||| |||    
T  28587846 taaaatatgatgatataacatgttttaaatgaagtttttaacgtaattttctttcaattttatcgatttttacattttctcatcttcatatcatattcca 28587747  T
Q  300 attcatttaaaacatatcacatccccaatttttagttaaaaaatatg-tggaag-accaaaattgtcagattttaaaatagggggaccaaatcttcaaaa 397  Q
    |  |||||||||| ||||||||| ||  |||||||||||||| |||| |||| | || |||| ||||  ||||||||||||||||||||||| | |||||    
T  28587746 agacatttaaaacctatcacatcacctctttttagttaaaaa-tatgatggagggacgaaaactgtcgaattttaaaatagggggaccaaatttgcaaaa 28587648  T
Q  398 tggtgaaaatagtgggaccaaaattgtaattaagcct 434  Q
    ||||||||| || |||||||||| || ||||||||||    
T  28587647 tggtgaaaacagggggaccaaaactgcaattaagcct 28587611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 110 - 341
Target Start/End: Complemental strand, 10244619 - 10244379
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtct 208  Q
    |||||||||||||| |||| ||| ||||||| |||||||  ||||| ||||  | ||||||||||||||||||||||| |||  ||||  ||||| ||||    
T  10244619 ttaattgcagttttggtcttcctgttttcactattttgcaaaattggtccccctattttaaaatttgacagttttggttcctatatcatttattttgtct 10244520  T
Q  209 aaaatatggtgatatgatatgttttcaattaagtttttaagaga--------acaatttcatcgatgttgatatgtttccatcatcacatcatataccaa 300  Q
    |||||||| |||||| | ||||||| ||| |||||||||||  |        || ||||||||||||||||||| ||  |||  ||| ||||||||| ||    
T  10244519 aaaatatgatgatataacatgttttaaatgaagtttttaaggaagttttcttacgatttcatcgatgttgatattttctcattttcagatcatatactaa 10244420  T
Q  301 ttcatttaaaacatatcacatccccaatttttagttaaaaa 341  Q
      |||||||||| ||||| ||| ||  ||||||||||||||    
T  10244419 gacatttaaaacctatcatatcacctctttttagttaaaaa 10244379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 110 - 245
Target Start/End: Complemental strand, 4838133 - 4837997
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtct 208  Q
    ||||||| |||| | ||| || |||||||| ||||||||| ||||| ||||  | |||||||| |||||| ||||||||| || ||||||||||| || |    
T  4838133 ttaattgtagttctggtccccttattttcatcattttgcgaaattggtccccctattttaaaagttgacaattttggtccatctatcaaatattttgttt 4838034  T
Q  209 aaaatatggtgatatgatatgttttcaattaagtttt 245  Q
    ||||||| ||||||||||||||||| ||| |||||||    
T  4838033 aaaatattgtgatatgatatgttttaaatgaagtttt 4837997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 109 - 245
Target Start/End: Original strand, 6196698 - 6196835
Alignment:
Q  109 tttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtc 207  Q
    |||||||| |||||| ||| || |||||||| |||||| || ||||| ||||  | ||||||||||  ||| |||||||||||| ||||||||||| |||    
T  6196698 tttaattgtagttttggtccccttattttcatcattttacgaaattggtccccctattttaaaattcaacaattttggtccctctatcaaatattttgtc 6196797  T
Q  208 taaaatatggtgatatgatatgttttcaattaagtttt 245  Q
    |||||||| |||||||| ||| |||| ||| |||||||    
T  6196798 taaaatattgtgatatgttatattttaaatgaagtttt 6196835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 118 - 250
Target Start/End: Complemental strand, 2237062 - 2236929
Alignment:
Q  118 agttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatg 216  Q
    |||||| ||||||||||||||| ||||||||| ||||| ||||  |  ||| |||||| | | ||||| |||||| |||| |||||| |||||||||||     
T  2237062 agtttttgtctccctattttcatcattttgcgaaattggtccccataattttaaattttataattttgatccctctatcacatattttgtctaaaatatt 2236963  T
Q  217 gtgatatgatatgttttcaattaagtttttaaga 250  Q
     ||||||||||| |||| ||| ||||||||||||    
T  2236962 atgatatgatatattttaaatgaagtttttaaga 2236929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 352 - 420
Target Start/End: Original strand, 28587867 - 28587935
Alignment:
Q  352 gaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaa 420  Q
    |||||||| ||||  |||||||||||||||| |||||| | ||||||||||||||||| ||||||||||    
T  28587867 gaccaaaactgtcgaattttaaaataggggggccaaatttacaaaatggtgaaaatagggggaccaaaa 28587935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 367 - 430
Target Start/End: Original strand, 6198104 - 6198167
Alignment:
Q  367 attttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaa 430  Q
    ||||||||||||||||||||| ||| |||||||||||||||||  ||||||||| || ||||||    
T  6198104 attttaaaatagggggaccaattctacaaaatggtgaaaatagatggaccaaaactgcaattaa 6198167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 33819859 - 33819944
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaag 249  Q
    |||||||||| | || ||||| | | || ||||||||||| ||||||||||| |||||| |||||||||| ||| |||||||||||    
T  33819859 ttttaaaattcggcaattttgtttcatctatcaaatattttgtctaaaatattgtgatacgatatgttttaaatgaagtttttaag 33819944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 6198169 - 6198080
Alignment:
Q  108 gtttaattgcagttttagtctccctattttcaccattttgcggaattgat-cccttgttttaaaatttgacagttttggtccctccatca 196  Q
    |||||||||||||||| |||   |||||||||||||||||  |||||| | ||| | |||||||||| | |||||||| |||||||||||    
T  6198169 gtttaattgcagttttggtccatctattttcaccattttgtagaattggtccccctattttaaaattcgtcagttttgctccctccatca 6198080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 2145542 - 2145602
Alignment:
Q  183 tggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtt 243  Q
    ||||||||| || |||||||| | |||||||||| |||||||||||||||| ||| |||||    
T  2145542 tggtccctcgatgaaatatttaggctaaaatatgatgatatgatatgttttaaatgaagtt 2145602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 353 - 431
Target Start/End: Original strand, 10244542 - 10244620
Alignment:
Q  353 accaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaag 431  Q
    ||||||| ||||| ||||||||||||||||||||| | | |||||| ||||||| ||   |||||||| || |||||||    
T  10244542 accaaaactgtcaaattttaaaatagggggaccaattttgcaaaatagtgaaaacaggaagaccaaaactgcaattaag 10244620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 12480423 - 12480465
Alignment:
Q  206 tctaaaatatggtgatatgatatgttttcaattaagtttttaa 248  Q
    |||||||||||||||||||||||||||  ||| ||||||||||    
T  12480423 tctaaaatatggtgatatgatatgtttaaaatgaagtttttaa 12480465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 352 - 417
Target Start/End: Original strand, 4838055 - 4838120
Alignment:
Q  352 gaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggacca 417  Q
    ||||||||||||||  |||||||||||||||||||| |   ||||||| ||||||||  |||||||    
T  4838055 gaccaaaattgtcaacttttaaaatagggggaccaatttcgcaaaatgatgaaaataaggggacca 4838120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 33447004 - 33446951
Alignment:
Q  197 aatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaaga 250  Q
    ||||||| |||||||||||| ||||||   ||||||| ||||||||||||||||    
T  33447004 aatattttgtctaaaatatgttgatatatcatgtttttaattaagtttttaaga 33446951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 3207673 - 3207754
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttt 245  Q
    |||||||||| |||| |||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||| |||||||    
T  3207673 ttttaaaattcgacaattttagtccctctatcaaatattttgtctaaaatattgtgatatgatatgttttaaatgaagtttt 3207754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 113 - 245
Target Start/End: Original strand, 13267796 - 13267928
Alignment:
Q  113 attgcagttttagtctccctattttcaccattttgcggaattgatcccttgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaa 212  Q
    |||| |||||| ||| ||||||||| || ||||||   ||||| |||| | |||||||||| |||||||||||||||||  || ||||||| || |||||    
T  13267796 attgaagttttggtccccctatttttactattttgtaaaattggtcccctattttaaaattcgacagttttggtccctctttctaatattttgtttaaaa 13267895  T
Q  213 tatggtgatatgatatgttttcaattaagtttt 245  Q
    ||||||||||| | ||||||| ||| |||||||    
T  13267896 tatggtgatataacatgttttaaatgaagtttt 13267928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 20771755 - 20771631
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtct 208  Q
    ||||||| |||||| ||| ||||||||||| ||||||||  ||||| ||||| | ||||||||||| ||| ||||||| |||| |||||| |  | ||||    
T  20771755 ttaattgtagttttggtccccctattttcatcattttgcaaaattggtccctctattttaaaatttaacatttttggttcctctatcaaaaaaattgtct 20771656  T
Q  209 aaaatatggtgatatgatatgtttt 233  Q
    ||||||| |||||||||||||||||    
T  20771655 aaaatattgtgatatgatatgtttt 20771631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 20781549 - 20781425
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtct 208  Q
    ||||||| |||||| ||| ||||||||||| ||||||||  ||||| ||||| | ||||||||||| ||| ||||||| |||| |||||| |  | ||||    
T  20781549 ttaattgtagttttggtccccctattttcatcattttgcaaaattggtccctctattttaaaatttaacatttttggttcctctatcaaaaaaattgtct 20781450  T
Q  209 aaaatatggtgatatgatatgtttt 233  Q
    ||||||| |||||||||||||||||    
T  20781449 aaaatattgtgatatgatatgtttt 20781425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 108 - 248
Target Start/End: Original strand, 39186150 - 39186292
Alignment:
Q  108 gtttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaattt-gacagttttggtccctccatcaaatatttgg 205  Q
    |||||||| ||||||| |||  |||||||||| ||||||||  ||||| ||||  | |||||||| || |||| ||||| |||||| |||| |||||| |    
T  39186150 gtttaattacagttttggtcctcctattttcatcattttgcaaaattggtccccctattttaaaacttcgacaattttgatccctctatcacatattttg 39186249  T
Q  206 tctaaaatatggtgatatgatatgttttcaattaagtttttaa 248  Q
    |||||||||| ||||||| ||||||||| ||| ||||||||||    
T  39186250 tctaaaatattgtgatatcatatgttttaaatgaagtttttaa 39186292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 36632966 - 36632863
Alignment:
Q  107 ggtttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttgg 205  Q
    ||||||||||||||||||||| ||||||||| |||||| ||| |||||||||||| | ||||||| || |||||||||| |||||| ||| ||||||| |    
T  36632966 ggtttaattgcagttttagtc-ccctatttttaccattctgcagaattgatccctatattttaaagttcgacagttttgatccctctatc-aatattttg 36632869  T
Q  206 tctaaa 211  Q
    ||||||    
T  36632868 tctaaa 36632863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 38255212 - 38255275
Alignment:
Q  170 aatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgtttt 233  Q
    |||| |||| |||||||||||| |||||||||||| |||||||||| |||||||||||||||||    
T  38255212 aattagacaattttggtccctctatcaaatatttgttctaaaatattgtgatatgatatgtttt 38255275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 435
Target Start/End: Original strand, 24587142 - 24587422
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaagaga-------acaa 256  Q
    |||||||||| |||| |||||||||||| ||||||||||| ||||||||| |  |||||||||||||||| ||| | ||||  | || |       ||||    
T  24587142 ttttaaaattcgacaattttggtccctctatcaaatattttgtctaaaatgttatgatatgatatgttttaaataatgtttcaaggaaagtttgttacaa 24587241  T
Q  257 tttcatcgatgttgatatgtttccatcatcacatcatataccaattcatttaaaacatatcacatccccaatttttagttaaaaaatatg-tgga-agac 354  Q
    |||||||||||||||| | ||| |||| | |  ||| ||||||   |||||||||  ||||||||| |   ||| ||||| ||||||||| |||| ||||    
T  24587242 tttcatcgatgttgatcttttttcatctttaggtcacataccaccacatttaaaatttatcacatcacatttttatagttcaaaaatatgatggagagac 24587341  T
Q  355 caaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaagccta 435  Q
    |||||  |||  |||||||  || | |||| ||| ||  ||||||||||||||||  ||||||||| || |||||||||||    
T  24587342 caaaaccgtcgaattttaacttacgaggacaaaaactgtaaaatggtgaaaataggtggaccaaaactgaaattaagccta 24587422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 32089354 - 32089220
Alignment:
Q  114 ttgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaa 212  Q
    |||||||||| ||| ||||||||||| | ||||| | ||||| ||||  | |||| || || ||||||||||||| ||| ||| |||| || |||| |||    
T  32089354 ttgcagttttggtccccctattttcatctttttgtgaaattggtccccctattttgaagttcgacagttttggtctctctatctaataatttgtcttaaa 32089255  T
Q  213 tatggtgatatgatatgttttcaattaagttttta 247  Q
    ||||||||||| | ||||||| ||| |||||||||    
T  32089254 tatggtgatataacatgttttaaatgaagttttta 32089220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 367 - 432
Target Start/End: Original strand, 3207876 - 3207941
Alignment:
Q  367 attttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaagc 432  Q
    ||||||||||||||||||||| ||| |||||| |||||||||| ||||| |||| || ||||||||    
T  3207876 attttaaaatagggggaccaattctgcaaaatagtgaaaatagggggacaaaaagtgcaattaagc 3207941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 3207939 - 3207852
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgat-cccttgttttaaaatttgacagttttggtccctccatca 196  Q
    ||||||||| |||| ||| |||||||||||| ||||||| |||||| | ||| | |||||||||| || |||||||||| ||||||||    
T  3207939 ttaattgcactttttgtccccctattttcactattttgcagaattggtccccctattttaaaattcgatagttttggtcactccatca 3207852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 353 - 435
Target Start/End: Original strand, 20771678 - 20771760
Alignment:
Q  353 accaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaagccta 435  Q
    ||||||| ||| | |||||||||||| |||||||| | | ||||||| ||||||||| |||||||||| |  |||||||||||    
T  20771678 accaaaaatgttaaattttaaaatagagggaccaattttgcaaaatgatgaaaatagggggaccaaaactacaattaagccta 20771760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 353 - 435
Target Start/End: Original strand, 20781472 - 20781554
Alignment:
Q  353 accaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaagccta 435  Q
    ||||||| ||| | |||||||||||| |||||||| | | ||||||| ||||||||| |||||||||| |  |||||||||||    
T  20781472 accaaaaatgttaaattttaaaatagagggaccaattttgcaaaatgatgaaaatagggggaccaaaactacaattaagccta 20781554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 368 - 430
Target Start/End: Complemental strand, 39186214 - 39186152
Alignment:
Q  368 ttttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaa 430  Q
    |||||||||||||||||||| | | ||||||| |||||||||  ||||||||| |||||||||    
T  39186214 ttttaaaatagggggaccaattttgcaaaatgatgaaaataggaggaccaaaactgtaattaa 39186152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 30493002 - 30492921
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttt 245  Q
    |||| |||||||  |||||||||| |||||||||||||||| | ||||||||| |||| ||| || |||| ||| |||||||    
T  30493002 ttttcaaatttgttagttttggtctctccatcaaatatttgatttaaaatatgatgatttgacatattttaaataaagtttt 30492921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 30537801 - 30537861
Alignment:
Q  258 ttcatcgatgttgatatgtttccatcatcacatcatataccaattcatttaaaacatatca 318  Q
    ||||||||||||||||| ||  |||||||| |||||||| ||  |||||||||||||||||    
T  30537801 ttcatcgatgttgatattttctcatcatcaaatcatatatcatatcatttaaaacatatca 30537861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 11158907 - 11158974
Alignment:
Q  164 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgtt 231  Q
    ||||||||||| |||||| || ||| | ||||||||||||| ||||||||||| | |||| |||||||    
T  11158907 ttttaaaattttacagttatgatccattcatcaaatatttgatctaaaatatgataatattatatgtt 11158974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 253 - 430
Target Start/End: Complemental strand, 3171001 - 3170818
Alignment:
Q  253 acaatttcatcgatgttgatatgtttccatcatcacatcatataccaattcatttaaaacatatcacatccccaattt-----ttagttaaaaaatatgt 347  Q
    |||||||| | ||||||||||| || ||||||||| ||||||||  |  |||||||||| | |||||||  |||||||     ||||||||||||||||     
T  3171001 acaatttcgttgatgttgatattttcccatcatcatatcatata-aacgtcatttaaaatacatcacatgaccaattttttagttagttaaaaaatatga 3170903  T
Q  348 ggaa--gaccaaaattgtcaga-ttttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaa 430  Q
     |||  || ||||||||| ||| ||||||| |||  | ||||||||| ||||||||| |||||||   ||||||||||| ||||||    
T  3170902 cgaaatgatcaaaattgttagatttttaaactagtagaaccaaatctacaaaatggtaaaaatag-atgaccaaaattgcaattaa 3170818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 368 - 430
Target Start/End: Original strand, 6898784 - 6898846
Alignment:
Q  368 ttttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaa 430  Q
    ||||||||||||  || |||||   ||||||||||||||||| |||||||||||| |||||||    
T  6898784 ttttaaaataggaagatcaaattcacaaaatggtgaaaatagggggaccaaaattataattaa 6898846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 11732086 - 11732164
Alignment:
Q  253 acaatttcatcgatgttgatatgtttccatcatcacatcatataccaattcatttaaaacatatcacatccccaatttt 331  Q
    |||||||  ||||||||||| | |||||||||||  |||||||| ||  ||||||||| ||||||||||  ||||||||    
T  11732086 acaattttgtcgatgttgatctttttccatcatcgaatcatataacacgtcatttaaatcatatcacattaccaatttt 11732164  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 38255485 - 38255395
Alignment:
Q  107 ggtttaattgcagttttagtctccctattttcaccattttgcggaattgatccct-tgttttaaaatttgacagttttggtccctccatca 196  Q
    ||||||||||||||||| |||  | |||||| | | |||||  |||||||||||  | |||||||||| |||||||||||||||| |||||    
T  38255485 ggtttaattgcagttttggtcctcttatttttatccttttgtagaattgatccccatattttaaaattcgacagttttggtccctgcatca 38255395  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 14954158 - 14954113
Alignment:
Q  302 tcatttaaaacatatcacatccccaa-tttttagttaaaaaatatg 346  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||||    
T  14954158 tcatttaaaacatatcacatctccaattttttagttcaaaaatatg 14954113  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 352 - 433
Target Start/End: Complemental strand, 24587165 - 24587084
Alignment:
Q  352 gaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaattgtaattaagcc 433  Q
    |||||||||||||  ||||||||||| || ||||||| || |||||| || ||||||| || ||||||| |  |||||||||    
T  24587165 gaccaaaattgtcgaattttaaaatatggagaccaaaactacaaaatagtaaaaataggggaaccaaaactacaattaagcc 24587084  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 30537725 - 30537656
Alignment:
Q  351 agaccaaaattgtcagattttaaaatagggggaccaaatcttcaaaatggtgaaaatagtgggaccaaaa 420  Q
    ||||||||||||||| ||||| |||||| |||||||| | |  ||||||| ||||||||  |||||||||    
T  30537725 agaccaaaattgtcatatttttaaatagagggaccaattatgtaaaatggagaaaataggaggaccaaaa 30537656  T

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Target: scaffold0122 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 17805 - 17717
Alignment:
Q  162 tgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagtttttaaga 250  Q
    ||||||||||||  ||| ||||||||  || ||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||| ||||    
T  17805 tgttttaaaattccacaattttggtcattctatcaaatattttgtctaaaatattgtgatatgatatgttttaaatgaagttttcaaga 17717  T

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Target: scaffold0062 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 20222 - 20337
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatc-ccttgttttaaaatttgacagttttggtccctccatcaaatatttggtct 208  Q
    ||||||||| |||||||| |  |||| | | ||||||||  |||||||| |||| |||| ||||| || | ||||||||| || ||||||||||| ||||    
T  20222 ttaattgcacttttagtccctttattattagcattttgcaaaattgatctccttatttttaaattcgataattttggtccttctatcaaatattttgtct 20321  T
Q  209 aaaatatggtgatatg 224  Q
    ||||||| ||||||||    
T  20322 aaaatattgtgatatg 20337  T

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Target: scaffold0062; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 30390 - 30505
Alignment:
Q  110 ttaattgcagttttagtctccctattttcaccattttgcggaattgatc-ccttgttttaaaatttgacagttttggtccctccatcaaatatttggtct 208  Q
    ||||||||| |||||||| |  |||| | | ||||||||  |||||||| |||| |||| ||||| || | ||||||||| || ||||||||||| ||||    
T  30390 ttaattgcacttttagtccctttattattagcattttgcaaaattgatctccttatttttaaattcgataattttggtccttctatcaaatattttgtct 30489  T
Q  209 aaaatatggtgatatg 224  Q
    ||||||| ||||||||    
T  30490 aaaatattgtgatatg 30505  T

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Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 162135 - 162218
Alignment:
Q  165 tttaaaatttgacagttttggtccctccatcaaatatttggtctaaaa-tatggtgatatgatatgttttcaattaagttttta 247  Q
    ||||||||||||| | |||| | ||| ||||||||||||||||||||| |||||| |||||| ||||||| ||  |||||||||    
T  162135 tttaaaatttgactgctttgatacctacatcaaatatttggtctaaaattatggtaatatgacatgttttaaacgaagttttta 162218  T

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Target: scaffold0136 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 32468 - 32550
Alignment:
Q  165 tttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaagttttta 247  Q
    |||||||||||||||||  ||||| || |||||||||||| |||||||||  || |||||| ||||||| ||| ||| |||||    
T  32468 tttaaaatttgacagttcgggtccttctatcaaatatttgatctaaaatacagtaatatgacatgttttaaatgaagatttta 32550  T

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