View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5705_high_7 (Length: 395)

Name: NF5705_high_7
Description: NF5705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5705_high_7
NF5705_high_7
[»] chr1 (10 HSPs)
chr1 (13-393)||(45792661-45793040)
chr1 (268-395)||(50004877-50005004)
chr1 (206-364)||(26793702-26793860)
chr1 (202-363)||(19806769-19806932)
chr1 (206-364)||(9383239-9383397)
chr1 (230-383)||(4950160-4950312)
chr1 (206-364)||(4076358-4076516)
chr1 (259-364)||(6768260-6768365)
chr1 (206-364)||(49236112-49236270)
chr1 (206-255)||(30951329-30951378)
[»] chr8 (9 HSPs)
chr8 (197-363)||(22573071-22573237)
chr8 (199-385)||(40028760-40028946)
chr8 (205-389)||(7547801-7547985)
chr8 (261-364)||(9028646-9028749)
chr8 (284-383)||(11066506-11066605)
chr8 (251-366)||(32889941-32890056)
chr8 (202-359)||(31734257-31734414)
chr8 (245-395)||(38503823-38503972)
chr8 (245-364)||(39283691-39283810)
[»] chr5 (5 HSPs)
chr5 (201-395)||(13039655-13039849)
chr5 (201-395)||(13109649-13109843)
chr5 (204-322)||(13417058-13417175)
chr5 (207-364)||(34731215-34731372)
chr5 (207-295)||(16290799-16290887)
[»] chr7 (10 HSPs)
chr7 (205-389)||(10026381-10026565)
chr7 (219-364)||(23318950-23319095)
chr7 (266-388)||(39644909-39645031)
chr7 (198-364)||(41482432-41482598)
chr7 (261-364)||(39594635-39594738)
chr7 (340-386)||(47038573-47038619)
chr7 (328-389)||(45980444-45980504)
chr7 (204-364)||(2333998-2334161)
chr7 (250-364)||(24429679-24429793)
chr7 (261-319)||(44107776-44107834)
[»] chr2 (11 HSPs)
chr2 (269-395)||(7670385-7670511)
chr2 (209-386)||(16567700-16567877)
chr2 (203-322)||(24447922-24448041)
chr2 (266-395)||(18665165-18665294)
chr2 (226-363)||(40626434-40626571)
chr2 (328-395)||(38490279-38490345)
chr2 (206-366)||(6452409-6452568)
chr2 (263-363)||(5256379-5256479)
chr2 (285-364)||(1529690-1529769)
chr2 (267-364)||(40054475-40054572)
chr2 (206-276)||(1529794-1529861)
[»] chr4 (16 HSPs)
chr4 (199-322)||(22202864-22202987)
chr4 (250-364)||(26635273-26635387)
chr4 (212-322)||(26183605-26183715)
chr4 (204-364)||(19181425-19181585)
chr4 (265-364)||(33235806-33235905)
chr4 (245-364)||(45413782-45413901)
chr4 (225-324)||(55945704-55945803)
chr4 (203-383)||(24155110-24155290)
chr4 (266-364)||(36625548-36625646)
chr4 (266-364)||(2183300-2183398)
chr4 (219-319)||(35320583-35320683)
chr4 (265-363)||(33451327-33451425)
chr4 (270-364)||(44126013-44126107)
chr4 (206-362)||(42964462-42964616)
chr4 (330-378)||(29539212-29539260)
chr4 (206-254)||(26635550-26635598)
[»] chr3 (6 HSPs)
chr3 (217-353)||(48936324-48936458)
chr3 (245-364)||(40416932-40417051)
chr3 (340-384)||(44764062-44764106)
chr3 (204-364)||(32490846-32491006)
chr3 (261-364)||(7038604-7038707)
chr3 (306-364)||(38457782-38457840)
[»] chr6 (3 HSPs)
chr6 (269-364)||(8573800-8573895)
chr6 (259-364)||(8547447-8547552)
chr6 (206-278)||(10099032-10099104)


Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 393
Target Start/End: Complemental strand, 45793040 - 45792661
Alignment:
Q  13 tcatcaagctaattacaagaagatgaataaaacaaaggagttgaaaaacacaagaaaagggtttatttgtgttgacatttttacacttattttcttaann 112  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  45793040 tcatcaagctaattataagaagatgaaaaaaacaaaggagttgaaaaacacaagaaaagggtttatttgtgttgacatttttacacttattttcttaatt 45792941  T
Q  113 nnnnnnaattaaaatgaaagaattttcaatcaaattatttcactttaactaaaaagacattggagaaacaatgaagttaaactgtaagagcccgtttggt 212  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45792940 ttttttaattaaaatgaaagaattttcaatcaaattatttcactttaactaaaaagacattggagaaacaatgaagttaaacggtaagagcccgtttggt 45792841  T
Q  213 gtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaa 312  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  45792840 gtgcaggataaggagacatgatatgattagaatatcctatcctgactcaatccgtt-tttggtgcaccaacagaaaatgataagtttaacatgtttctaa 45792742  T
Q  313 tcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagcactataat 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45792741 tcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagcattataat 45792661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 268 - 395
Target Start/End: Complemental strand, 50005004 - 50004877
Alignment:
Q  268 tgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaat 367  Q
    ||||||||||||||| |  ||| ||||| || ||| | ||||||||||||||||| | | ||||||| ||| ||||||||||||||||||||||||||||    
T  50005004 tgtttggtgcaccaataaaaaaggataatttaaacctatttctaatcctatcctaatcaccctttgttatttttatccttagtttttggtgggttagaat 50004905  T
Q  368 tatcctatcatgattagcactataatcc 395  Q
    |||||||||||||||||||||| |||||    
T  50004904 tatcctatcatgattagcactagaatcc 50004877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 206 - 364
Target Start/End: Original strand, 26793702 - 26793860
Alignment:
Q  206 gtttggtgtgcaggataaggagacaagatatgattagaa-tatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacat 304  Q
    ||||||||  || |||||| ||||| |||||||| |||| |||| |||||||| |||||||||||||||||||||||| || ||| ||||| || ||| |    
T  26793702 gtttggtgcacatgataagaagacatgatatgat-agaactatcatatcctgattcaatccgttgtttggtgcaccaatagaaaaggataacttaaactt 26793800  T
Q  305 gtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
     ||||||||||||||||| | | ||||||| ||| |||| ||||||||||||||||||||    
T  26793801 atttctaatcctatcctaatcaacctttgttatttttattcttagtttttggtgggttag 26793860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 202 - 363
Target Start/End: Complemental strand, 19806932 - 19806769
Alignment:
Q  202 gcccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggt--gcaccaacaggaaatgataagttt 299  Q
    ||||||||||||  || |||||||||| | |||||||| | | ||||||||||| | |||||| | ||||||||  ||| ||| |||||| ||||| ||     
T  19806932 gcccgtttggtgcacatgataaggagataggatatgataacactatcctatccttattcaatctggtgtttggtttgcatcaataggaaaggataaatta 19806833  T
Q  300 aacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggtta 363  Q
    ||| | ||||||||||||||||||| |  ||||||  |||| ||||||||||||||||||||||    
T  19806832 aacctatttctaatcctatcctattcactctttgtttttctaatccttagtttttggtgggtta 19806769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 364
Target Start/End: Complemental strand, 9383397 - 9383239
Alignment:
Q  206 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatg 305  Q
    |||||||||  |||||| ||||| |||||||||| | | ||||  ||||||| | ||||| |||||||||||||||| |||||  ||||| || |||       
T  9383397 gtttggtgtataggatagggagaaaagatatgataaaactatcacatcctgattaaatccattgtttggtgcaccaataggaacggataaattaaaccaa 9383298  T
Q  306 tttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
    ||||||||| ||||||| | | ||||||| ||| | ||||||| |||||| ||||||||    
T  9383297 tttctaatcttatcctactcaccctttgttattttcatccttaatttttgatgggttag 9383239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 383
Target Start/End: Original strand, 4950160 - 4950312
Alignment:
Q  230 aagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcc 329  Q
    |||||||||| |  |||||||||| ||  |||||  | ||||||||||| ||| || ||||||||| || |||   |||  |||| ||||||||| | ||    
T  4950160 aagatatgataaacatatcctatcttgtttcaatttgatgtttggtgcatcaatagaaaatgataatttaaactcattttcaatcatatcctatttaccc 4950259  T
Q  330 tttgtaattcttatccttagtttttggtgggttagaattatcctatcatgatta 383  Q
    ||||| ||| ||||||| |||||||||||||||||||||||| || ||||||||    
T  4950260 tttgttatttttatcct-agtttttggtgggttagaattatcataccatgatta 4950312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 364
Target Start/End: Complemental strand, 4076516 - 4076358
Alignment:
Q  206 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatg 305  Q
    ||||||||  || |||||||||| | |||||||| | | |||| || ||| | | |||| | ||||||||||| ||| |||||| ||||| || ||| |     
T  4076516 gtttggtgcacatgataaggagataggatatgataacactatcatacccttatttaatctggtgtttggtgcatcaataggaaaggataaattaaaccta 4076417  T
Q  306 tttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
    || |||||||||||||||| |  ||||||  |||| |||||||||||||||||| ||||    
T  4076416 ttactaatcctatcctattcactctttgtttttctaatccttagtttttggtggattag 4076358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 364
Target Start/End: Original strand, 6768260 - 6768365
Alignment:
Q  259 tcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtg 358  Q
    |||||| ||||||||||| ||||| || ||||||||| || ||| | ||||  ||||||| ||||  | ||||||| ||| ||||||||| |||||||||    
T  6768260 tcaatctgttgtttggtgtaccaatagaaaatgataaattaaacttatttcctatcctattctatccaacctttgttatttttatccttaatttttggtg 6768359  T
Q  359 ggttag 364  Q
    ||||||    
T  6768360 ggttag 6768365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 364
Target Start/End: Original strand, 49236112 - 49236270
Alignment:
Q  206 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatg 305  Q
    |||||||| |||||||||  ||||| ||||||||   | |||| ||||||||   ||||  |||||||||||||||| || ||| ||||| || |||||     
T  49236112 gtttggtgcgcaggataactagacaggatatgatacaattatcatatcctgatgaaatctattgtttggtgcaccaatagaaaaggataaattaaacata 49236211  T
Q  306 tttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
    ||||   ||||||||||   | ||||| | |||| ||||||| ||||||||||||||||    
T  49236212 tttcatttcctatcctacccaacctttcttattcatatccttggtttttggtgggttag 49236270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 30951329 - 30951378
Alignment:
Q  206 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcct 255  Q
    |||||||| ||||||||  |||||||||||||||||| ||||||||||||    
T  30951329 gtttggtgcgcaggatagagagacaagatatgattagcatatcctatcct 30951378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 197 - 363
Target Start/End: Original strand, 22573071 - 22573237
Alignment:
Q  197 taagagcccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataag 296  Q
    ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22573071 taagagcccgtttggtgcgcatgataaggagacatgatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataag 22573170  T
Q  297 tttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggtta 363  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22573171 tttaacctgtttctaatcctatcctattgaacctttgtaattcttatccttagtttttggtgggtta 22573237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 199 - 385
Target Start/End: Original strand, 40028760 - 40028946
Alignment:
Q  199 agagcccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtt 298  Q
    ||||||||||||||| |||||||||||||||| |||||||||| |||||| ||||||| ||||||| |||||||||||| ||||||||||||||||| ||    
T  40028760 agagcccgtttggtgcgcaggataaggagacaggatatgattaaaatatcatatcctgcctcaatctgttgtttggtgcgccaacaggaaatgataactt 40028859  T
Q  299 taacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagc 385  Q
    |||| | |||||||||  |||||| |   ||||||| ||| ||||||||||  ||| ||||||||||||||||||||||||||||||    
T  40028860 taacctttttctaatctcatcctactcctcctttgttatttttatccttaggattttgtgggttagaattatcctatcatgattagc 40028946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 205 - 389
Target Start/End: Original strand, 7547801 - 7547985
Alignment:
Q  205 cgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacat 304  Q
    ||||||||| | || |||||||||||||||||||||| | |||| |||| || || |||||||||||||||||||||||| ||||||||||||||||| |    
T  7547801 cgtttggtgcgaagaataaggagacaagatatgattacattatcatatcttgtcttaatccgttgtttggtgcaccaacaagaaatgataagtttaacct 7547900  T
Q  305 gtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagcacta 389  Q
     ||| | ||||||||| | |   ||||||  ||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7547901 attttttatcctatcccacttctcctttgatattattatccttagtttttggtgggttagaattatcctattatgattagcacta 7547985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 261 - 364
Target Start/End: Complemental strand, 9028749 - 9028646
Alignment:
Q  261 aatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtggg 360  Q
    |||| |||||||||||||||||||  ||| ||||| || ||| | ||| ||||||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  9028749 aatcggttgtttggtgcaccaacataaaaggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttatccttggtttttgatggg 9028650  T
Q  361 ttag 364  Q
    ||||    
T  9028649 ttag 9028646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 284 - 383
Target Start/End: Original strand, 11066506 - 11066605
Alignment:
Q  284 aggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgatta 383  Q
    |||||| ||||| || ||| | ||||||||||||||||| | ||||||||| ||| ||||||||| |||||||| |||||||||||||||||||||||||    
T  11066506 aggaaaggataacttaaacctatttctaatcctatcctactcagcctttgttatttttatccttaatttttggtaggttagaattatcctatcatgatta 11066605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 366
Target Start/End: Original strand, 32889941 - 32890056
Alignment:
Q  251 atcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagt 350  Q
    ||||||| ||||||||||||||| ||| |||| | ||||||||||||||||| | ||||||||||||||| | |   |||||||  || ||||||||||     
T  32889941 atcctgagtcaatccgttgtttgatgccccaatatgaaatgataagtttaacctatttctaatcctatcccacttctcctttgttgtttttatccttaga 32890040  T
Q  351 ttttggtgggttagaa 366  Q
    ||||||||||||||||    
T  32890041 ttttggtgggttagaa 32890056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 359
Target Start/End: Original strand, 31734257 - 31734414
Alignment:
Q  202 gcccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaa 301  Q
    ||||||||||||  || ||||  |||||| ||||||||  || | ||||||||||  | |||||||||||||||||||||| | |||||||||| || ||    
T  31734257 gcccgtttggtgcacatgatagagagacatgatatgataggactttcctatcctgctttaatccgttgtttggtgcaccaataagaaatgataaattaaa 31734356  T
Q  302 catgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgg 359  Q
    | | |||| |||| ||||| ||  | ||||||| ||| ||||||||||||||||||||    
T  31734357 cctatttccaatcttatcccatccaccctttgttatttttatccttagtttttggtgg 31734414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 395
Target Start/End: Complemental strand, 38503972 - 38503823
Alignment:
Q  245 tatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatc 344  Q
    |||| |||||||  |||||  ||||||||||||||||| ||||||  |||| || |||    |||||| ||||||||| | | ||||||| ||| ||||     
T  38503972 tatcatatcctgtttcaatttgttgtttggtgcaccaa-aggaaagaataacttaaactcacttctaaccctatcctactcaccctttgttatttttatt 38503874  T
Q  345 cttagtttttggtgggttagaattatcctatcatgattagcactataatcc 395  Q
     |||||||||||||||||||||||||   ||||| |||||||||| |||||    
T  38503873 tttagtttttggtgggttagaattatttcatcataattagcactaaaatcc 38503823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 364
Target Start/End: Original strand, 39283691 - 39283810
Alignment:
Q  245 tatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaac-atgtttctaatcctatcctattgagcctttgtaattcttat 343  Q
    |||| |||||||| ||||||| ||||||| ||||||||||  ||| ||||| || ||| || |||| ||||||||| |||| | ||||| |  || ||||    
T  39283691 tatcatatcctgagtcaatccattgtttgatgcaccaacataaaaggataaattaaaccatttttc-aatcctatcatattcaccctttattttttttat 39283789  T
Q  344 ccttagtttttggtgggttag 364  Q
    | ||| |||||||||||||||    
T  39283790 ctttaatttttggtgggttag 39283810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 201 - 395
Target Start/End: Original strand, 13039655 - 13039849
Alignment:
Q  201 agcccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagttta 300  Q
    ||||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||| || ||||| ||||||||||| || | |||||||||||||||||    
T  13039655 agcccgtttggtgcgcaggataaagagacaaaatatgattagtatatcctatcctgtcttaatccattgtttggtgcgcccataggaaatgataagttta 13039754  T
Q  301 acatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagcactataatcc 395  Q
    |||| ||||||||  ||||||||  | ||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  13039755 acatatttctaattatatcctatccatcctttattatttttatccttagtttttggtgggttagaattttcctatcatgattagcattaaaatcc 13039849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 201 - 395
Target Start/End: Original strand, 13109649 - 13109843
Alignment:
Q  201 agcccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagttta 300  Q
    ||||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||| || ||||| ||||||||||| || | || ||||||||||||||    
T  13109649 agcccgtttggtgcgcaggataaagagacaaaatatgattagtatatcctatcctgtcttaatccattgtttggtgcgcccatagaaaatgataagttta 13109748  T
Q  301 acatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagcactataatcc 395  Q
    |||| ||||||||| ||||||||  | ||||||| ||| ||||||||||||||||||||||||||||| || |||||||||||||| || |||||    
T  13109749 acatatttctaatcatatcctatccaccctttgttatttttatccttagtttttggtgggttagaattttcatatcatgattagcattaaaatcc 13109843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 13417175 - 13417058
Alignment:
Q  204 ccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaaca 303  Q
    |||||||||| ||| |||||||| ||| |||||||||| | |||  |||||||||||||||||  ||||||||||||||||| ||| ||||||||||||     
T  13417175 ccgtttggtgcgcatgataaggatacatgatatgattaaattattatatcctgactcaatccgc-gtttggtgcaccaacagaaaaagataagtttaacc 13417077  T
Q  304 tgtttctaatcctatccta 322  Q
    | |||||||||||| ||||    
T  13417076 tatttctaatcctaaccta 13417058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 364
Target Start/End: Original strand, 34731215 - 34731372
Alignment:
Q  207 tttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgt 306  Q
    ||||||| ||| ||||| |||| | |||||||| | | |||| ||||||   | ||||| |||||||||||||||| |||||| |||||  | ||| | |    
T  34731215 tttggtgcgcatgataaagagataggatatgataacactatcatatcctatttaaatcccttgtttggtgcaccaataggaaaggataaactaaacctat 34731314  T
Q  307 ttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
    |  ||||||||||||||  | ||||||| ||| | |||||||||||| | ||||||||    
T  34731315 tgttaatcctatcctatcaatcctttgttattttaatccttagttttagctgggttag 34731372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 295
Target Start/End: Complemental strand, 16290887 - 16290799
Alignment:
Q  207 tttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataa 295  Q
    ||||||| ||||||||| |||||| |||||||| | | |||| |||||||  | ||||| ||||||||||| || | |||||| |||||    
T  16290887 tttggtgcgcaggataaagagacaggatatgataaaattatcttatcctgtttaaatcctttgtttggtgctcccataggaaaggataa 16290799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 205 - 389
Target Start/End: Original strand, 10026381 - 10026565
Alignment:
Q  205 cgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacat 304  Q
    ||||||||| |||||||||||||||| |||||||||||| |||| |||| || || ||||| |||||||||||||||||| ||||||||||||||||| |    
T  10026381 cgtttggtgcgcaggataaggagacaggatatgattagattatcatatcttgtcttaatcccttgtttggtgcaccaacatgaaatgataagtttaacct 10026480  T
Q  305 gtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagcacta 389  Q
     ||||||||| ||||| | |   ||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  10026481 atttctaatcatatcccactcctcctttgttattcttatccttagtttttggtggattagaattatcctattatgattagcacta 10026565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 219 - 364
Target Start/End: Complemental strand, 23319095 - 23318950
Alignment:
Q  219 gataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctat 318  Q
    |||||| ||||| |||||||| | | |||| |||||||| | |||| |||||||||| |||||||| |||| ||||| || ||| | ||| |||||||||    
T  23319095 gataagaagacaggatatgataacactatcatatcctgattaaatctgttgtttggtccaccaacatgaaaggataatttaaacctatttttaatcctat 23318996  T
Q  319 cctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
    |||||||||||||||||||| |||||||| ||||||| ||||||||    
T  23318995 cctattgagcctttgtaatttttatccttggtttttgatgggttag 23318950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 266 - 388
Target Start/End: Original strand, 39644909 - 39645031
Alignment:
Q  266 gttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttaga 365  Q
    |||||||||||| |||| || ||| ||||| || |||   ||| ||||||||||||| | | ||||||| ||| ||||||||||||||||||||||||||    
T  39644909 gttgtttggtgcgccaatagaaaaggataacttaaacccatttataatcctatcctactcatcctttgttatttttatccttagtttttggtgggttaga 39645008  T
Q  366 attatcctatcatgattagcact 388  Q
    |||||||||||||||||||||||    
T  39645009 attatcctatcatgattagcact 39645031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 198 - 364
Target Start/End: Complemental strand, 41482598 - 41482432
Alignment:
Q  198 aagagcccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagt 297  Q
    ||||||||||||||||  || |||| | ||||| |||| ||| | | |||| | |||||| | ||| || |||||||||||||||||||||| ||||| |    
T  41482598 aagagcccgtttggtgcacatgataggaagacatgataggataaaactatcatctcctgatttaatgcgctgtttggtgcaccaacaggaaaggataact 41482499  T
Q  298 ttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
    | ||| | ||| ||||| ||||||| | | ||||||| ||| |||||||||||||||||||||||||    
T  41482498 taaacctatttttaatcatatcctactcaccctttgttatttttatccttagtttttggtgggttag 41482432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 364
Target Start/End: Original strand, 39594635 - 39594738
Alignment:
Q  261 aatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtggg 360  Q
    |||||||||||||||||||||| | || ||| ||| || ||| | || |||||| |||| |||| | ||||||||||| |||||||||||||||| ||||    
T  39594635 aatccgttgtttggtgcaccaataagatatgctaaattaaacctattactaatcttatcatattcatcctttgtaatttttatccttagtttttgatggg 39594734  T
Q  361 ttag 364  Q
    ||||    
T  39594735 ttag 39594738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 340 - 386
Target Start/End: Original strand, 47038573 - 47038619
Alignment:
Q  340 ttatccttagtttttggtgggttagaattatcctatcatgattagca 386  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  47038573 ttatctttagtttttggtgggttagaattatcctatcatgattagca 47038619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 45980504 - 45980444
Alignment:
Q  328 cctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagcacta 389  Q
    ||||||| ||| ||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  45980504 cctttgttatttttatccttactttttggtgggt-agaattatcctatcatgattagcacta 45980444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 364
Target Start/End: Complemental strand, 2334161 - 2333998
Alignment:
Q  204 ccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgact---caatccgttgtttggtgcaccaacaggaaatgataagttta 300  Q
    ||||||| || ||| |||||||||||| |||||||| | | |||| |||||||| |   ||||||| ||||||||||||||| ||||   ||||| || |    
T  2334161 ccgtttgatgcgcatgataaggagacatgatatgataacactatcatatcctgaatattcaatccggtgtttggtgcaccaataggattggataacttaa 2334062  T
Q  301 acatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
    || | ||| ||||||||||||||| | | ||||| ||| |||||  | ||||||||| ||||||    
T  2334061 acctatttttaatcctatcctattcaccttttgttatttttatctctggtttttggttggttag 2333998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 364
Target Start/End: Original strand, 24429679 - 24429793
Alignment:
Q  250 tatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttag 349  Q
    |||||||| ||| || | || ||| |||||||| || ||||||||| || ||  | ||| |||||||||| || | | ||||||| ||| ||||||||||    
T  24429679 tatcctgattcattctgctgcttgatgcaccaatagaaaatgataatttaaaactatttataatcctatcttactcaccctttgttatttttatccttag 24429778  T
Q  350 tttttggtgggttag 364  Q
    |||||||||||||||    
T  24429779 tttttggtgggttag 24429793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 44107776 - 44107834
Alignment:
Q  261 aatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatc 319  Q
    ||||| |||||||||||||||| |||||||||||| || ||| | || |||||||||||    
T  44107776 aatcctttgtttggtgcaccaataggaaatgataaattaaaccttttcctaatcctatc 44107834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 269 - 395
Target Start/End: Original strand, 7670385 - 7670511
Alignment:
Q  269 gtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaatt 368  Q
    |||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  7670385 gtttggtgcaccaatagaaaatgataagtttaacctgtttctaatcctatcctattgagcttttgtaattcttatccttaatttttggtgggttagaatt 7670484  T
Q  369 atcctatcatgattagcactataatcc 395  Q
    |||||||||||||||||| ||||||||    
T  7670485 atcctatcatgattagcattataatcc 7670511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 209 - 386
Target Start/End: Complemental strand, 16567877 - 16567700
Alignment:
Q  209 tggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgttt 308  Q
    ||||| |||||||||||||||| ||||||||| || |||| |||| || || ||||||||||||||||||||||||| ||| |||||||||||| | |||    
T  16567877 tggtgcgcaggataaggagacatgatatgatttgattatcatatcatgtcttaatccgttgtttggtgcaccaacagaaaaggataagtttaacctattt 16567778  T
Q  309 ctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagca 386  Q
    |||||||||||  | |   ||||||| |||||||||| |||||||||||||||| |||||||||||| ||||||||||    
T  16567777 ctaatcctatctcactcctcctttgttattcttatccatagtttttggtgggttggaattatcctattatgattagca 16567700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 24447922 - 24448041
Alignment:
Q  203 cccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaac 302  Q
    ||||||||||| |||||||||||||||| |||||||||| |||||  ||||||| |||||||||||||||||||  || | ||||||||||||||||||     
T  24447922 cccgtttggtgcgcaggataaggagacatgatatgattaaaatattttatcctgtctcaatccgttgtttggtgtgcccataggaaatgataagtttaat 24448021  T
Q  303 atgtttctaatcctatccta 322  Q
     | ||| ||||||| |||||    
T  24448022 ctatttgtaatcctgtccta 24448041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 395
Target Start/End: Original strand, 18665165 - 18665294
Alignment:
Q  266 gttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttaga 365  Q
    ||||||| ||||||||| |||||| ||||| || ||| | ||||||||  |||| || | | ||||||| | | ||||||||| ||||||||||||||||    
T  18665165 gttgtttcgtgcaccaaaaggaaaggataacttaaacctatttctaataatatcttactcaccctttgttaattttatccttaatttttggtgggttaga 18665264  T
Q  366 attatcctatcatgattagcactataatcc 395  Q
    |||||||||||||||||||||||| |||||    
T  18665265 attatcctatcatgattagcactaaaatcc 18665294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 226 - 363
Target Start/End: Original strand, 40626434 - 40626571
Alignment:
Q  226 agacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattg 325  Q
    ||||| |||||||| | | |||| |||| ||| |||||| | ||||||||||||||| |||||| ||||| || || || ||||||||||||||||| |     
T  40626434 agacaggatatgataaaactatcatatcttgattcaatctgctgtttggtgcaccaataggaaaggataatttaaatatatttctaatcctatcctactc 40626533  T
Q  326 agcctttgtaattcttatccttagtttttggtgggtta 363  Q
    | ||||| | ||| |||||||||  |||||||||||||    
T  40626534 accctttattatttttatccttaaattttggtgggtta 40626571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 328 - 395
Target Start/End: Complemental strand, 38490345 - 38490279
Alignment:
Q  328 cctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagcactataatcc 395  Q
    ||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  38490345 cctttgttatttttatc-ttagtttttggtgggttagaattatcctatcatgattaacactaaaatcc 38490279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 366
Target Start/End: Original strand, 6452409 - 6452568
Alignment:
Q  206 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatg 305  Q
    |||||||| ||| |||| ||||||| |||||||| | | ||||||||||    | ||||| | ||||| |||||||| | || ||||||| || ||| |     
T  6452409 gtttggtgcgcatgata-ggagacaggatatgataaaattatcctatccaatttaaatccatggtttgatgcaccaataagatatgataaattaaaccta 6452507  T
Q  306 tttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaa 366  Q
    || |||||| ||||||||| |  |||||||||||| |||||||||||||| ||||||||||    
T  6452508 ttactaatcttatcctattcacgctttgtaattctaatccttagtttttgttgggttagaa 6452568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 363
Target Start/End: Original strand, 5256379 - 5256479
Alignment:
Q  263 tccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggtt 362  Q
    |||| |||||||||||||   |||||||||||| || ||| ||||  ||||||||||||||||   |||||| ||| |||||||| ||||| | ||||||    
T  5256379 tccgctgtttggtgcaccggtaggaaatgataaattaaacttgttgttaatcctatcctattggctctttgttatttttatcctttgttttagctgggtt 5256478  T
Q  363 a 363  Q
    |    
T  5256479 a 5256479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 1529769 - 1529690
Alignment:
Q  285 ggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
    |||||||||||||||||| | ||| ||||| ||||||| |   |||||||  |||||||||||  |||||||||||||||    
T  1529769 ggaaatgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttag 1529690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 364
Target Start/End: Complemental strand, 40054572 - 40054475
Alignment:
Q  267 ttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
    |||||||||||||||| || |||||||||  | ||| | ||  ||||||||||||||  | ||||||| ||| | |||||||||||| | ||||||||    
T  40054572 ttgtttggtgcaccaatagaaaatgataaactaaacctattgttaatcctatcctatcaatcctttgttattttaatccttagttttagctgggttag 40054475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 1529861 - 1529794
Alignment:
Q  206 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtg 276  Q
    |||||||| ||| ||||| | |||| |||||||||||| |||   |||||||||||||||| |||||||||    
T  1529861 gtttggtgcgcatgataacgggacaggatatgattagattat---atcctgactcaatccgctgtttggtg 1529794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 199 - 322
Target Start/End: Original strand, 22202864 - 22202987
Alignment:
Q  199 agagcccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtt 298  Q
    ||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| || | |||||||||||||| |||  | | | |||||||||||||    
T  22202864 agagcccgtttggtgcgcaggataaggagacaggatatgatcagaatatcctatcgtgtcccaatccgttgtttgttgcgaccatatgaaatgataagtt 22202963  T
Q  299 taacatgtttctaatcctatccta 322  Q
    |||| | ||| |||||||||||||    
T  22202964 taacctatttttaatcctatccta 22202987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 250 - 364
Target Start/End: Complemental strand, 26635387 - 26635273
Alignment:
Q  250 tatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttag 349  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||| |||||| | |||| ||| |||||||| |   ||||| | ||||||||||||||    
T  26635387 tatcctgactcaatccgttttttggtgcaccaacatgatatgataaatttaacctatttccaattctatcctactcctcctttattattcttatccttag 26635288  T
Q  350 tttttggtgggttag 364  Q
    |||||||||||||||    
T  26635287 tttttggtgggttag 26635273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 26183605 - 26183715
Alignment:
Q  212 tgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttcta 311  Q
    |||||| ||||||||||||| ||| ||||| |||| | |||    ||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||    
T  26183605 tgtgcatgataaggagacaacatacgattaaaataacatatttaaactcaattccttgtttgatgcaccaacaggaaatgataagtttaacatatttcta 26183704  T
Q  312 atcctatccta 322  Q
    |||||||||||    
T  26183705 atcctatccta 26183715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 204 - 364
Target Start/End: Complemental strand, 19181585 - 19181425
Alignment:
Q  204 ccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaaca 303  Q
    ||||||||||  || ||||  |||||| |||||||| | | |||||||||||||  |||||  |||||||||||||||||| || ||||||| || |||     
T  19181585 ccgtttggtgcacatgatagagagacatgatatgataaaattatcctatcctgatccaatctattgtttggtgcaccaacatgatatgataaattaaacc 19181486  T
Q  304 tgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
    | ||||||||||||||||| | | ||||| | ||| || ||||||||||||||||| ||||    
T  19181485 tatttctaatcctatcctactcatcctttattatttttgtccttagtttttggtggattag 19181425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 265 - 364
Target Start/End: Complemental strand, 33235905 - 33235806
Alignment:
Q  265 cgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
    ||||| |||||||||||| || |||| ||||||||||| ||||  ||||||||||||||||| ||||||||||| ||||||||| |||||| || |||||    
T  33235905 cgttgcttggtgcaccaatagaaaataataagtttaacctgttcttaatcctatcctattgaacctttgtaattattatccttaatttttgatgagttag 33235806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 364
Target Start/End: Complemental strand, 45413901 - 45413782
Alignment:
Q  245 tatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatc 344  Q
    |||| |||| ||| |||||| ||||||||||||||||| |||||| ||||| || ||| | ||||  ||||||||||||  | ||||||| ||| |||||    
T  45413901 tatcatatcttgattcaatcggttgtttggtgcaccaataggaaaggataaattaaacctatttcctatcctatcctatctaacctttgttatttttatc 45413802  T
Q  345 cttagtttttggtgggttag 364  Q
    ||||||||||||||||||||    
T  45413801 cttagtttttggtgggttag 45413782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 324
Target Start/End: Complemental strand, 55945803 - 55945704
Alignment:
Q  225 gagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctatt 324  Q
    |||||| |||||||||| ||||||||| |||  ||||||||||||||||||||||||| |||||| ||||| |  ||  | |||||||||||||||||||    
T  55945803 gagacatgatatgattaaaatatcctacccttcctcaatccgttgtttggtgcaccaataggaaaggataaatccaatctatttctaatcctatcctatt 55945704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 383
Target Start/End: Original strand, 24155110 - 24155290
Alignment:
Q  203 cccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaac 302  Q
    |||||||||||  ||||||||| |||||  ||||||| | | |||| | |||||  ||||||  ||||||| |    ||| |||||||||||| || ||     
T  24155110 cccgtttggtgcacaggataagaagacagaatatgataatactatcatgtcctgtttcaatcttttgtttgatatgtcaataggaaatgataacttaaag 24155209  T
Q  303 atgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgatta 383  Q
     | ||||||||||||||||| | ||| ||||  ||| | |||||||||||||||||||| ||| |||||||||||||||||    
T  24155210 ctatttctaatcctatcctactcagcatttgatattttcatccttagtttttggtgggtcagagttatcctatcatgatta 24155290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 364
Target Start/End: Complemental strand, 36625646 - 36625548
Alignment:
Q  266 gttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
    |||||||||||||| || |||| ||||||| || ||| | || | |||||||||||||| | ||||||||||||| ||||||| |||||| ||||||||    
T  36625646 gttgtttggtgcactaataggatatgataaattaaacctattacgaatcctatcctattcaccctttgtaattctaatccttactttttgttgggttag 36625548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 364
Target Start/End: Original strand, 2183300 - 2183398
Alignment:
Q  266 gttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
    ||||||||||||||||| || ||| ||||| || |||   |||| |||||||||||||  | ||||||| ||| ||||||||| |||||||||||||||    
T  2183300 gttgtttggtgcaccaatagaaaaggataaattaaactcatttccaatcctatcctatccaacctttgttatttttatccttaatttttggtgggttag 2183398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 219 - 319
Target Start/End: Original strand, 35320583 - 35320683
Alignment:
Q  219 gataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctat 318  Q
    ||||||||||||| ||||||||| ||||||  ||| || || |||  |||||||| |||| ||||| |||| |||||||||||| | ||| |||||||||    
T  35320583 gataaggagacaatatatgattaaaatatctcatcatggcttaataagttgtttgctgcagcaacatgaaaggataagtttaacctatttttaatcctat 35320682  T
Q  319 c 319  Q
    |    
T  35320683 c 35320683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 363
Target Start/End: Original strand, 33451327 - 33451425
Alignment:
Q  265 cgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggtta 363  Q
    |||||||||||||||||| | || |||||||  | ||| | || ||| | |||||||||| | ||||||||||| | |||||||||||||| |||||||    
T  33451327 cgttgtttggtgcaccaatatgatatgataaaataaacctattactacttctatcctattcatcctttgtaattataatccttagtttttgatgggtta 33451425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 364
Target Start/End: Original strand, 44126013 - 44126107
Alignment:
Q  270 tttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
    ||||||||| ||| |||||||||||| || ||| | ||||||||||||||||||| | | |||||  |||| || ||| ||||||| ||||||||    
T  44126013 tttggtgcagcaataggaaatgataaattaaacttatttctaatcctatcctattcaccttttgtttttctaattctttgtttttgatgggttag 44126107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 362
Target Start/End: Complemental strand, 42964616 - 42964462
Alignment:
Q  206 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatg 305  Q
    |||||||| |||||||||| ||||| |||||||| | | ||||||||||||    |||||| | |||| |||||||| |||||| ||||| || |||       
T  42964616 gtttggtgcgcaggataagcagacaggatatgataaaactatcctatcctgctgaaatccggtatttgttgcaccaataggaaaggataatttaaaccca 42964517  T
Q  306 tttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggtt 362  Q
    || || ||||||||||||  |  || ||| ||| | |||||||||||||||||||||    
T  42964516 ttacttatcctatcctatcta--ctctgttattttaatccttagtttttggtgggtt 42964462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 378
Target Start/End: Original strand, 29539212 - 29539260
Alignment:
Q  330 tttgtaattcttatccttagtttttggtgggttagaattatcctatcat 378  Q
    ||||| ||| |||||| || |||||||||||||||||||||||||||||    
T  29539212 tttgttatttttatccctaatttttggtgggttagaattatcctatcat 29539260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 26635598 - 26635550
Alignment:
Q  206 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcc 254  Q
    |||||||| ||| |||||||||||| |||||||||||| |||| |||||    
T  26635598 gtttggtgcgcatgataaggagacatgatatgattagattatcatatcc 26635550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 217 - 353
Target Start/End: Complemental strand, 48936458 - 48936324
Alignment:
Q  217 aggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcct 316  Q
    |||||| | ||||| |||||||| ||| |||| |||||||  ||||||||||||||||||||||||||||||  ||||| || ||| ||||| |||||||    
T  48936458 aggataggaagacaggatatgataagactatcatatcctgtttcaatccgttgtttggtgcaccaacaggaa--gataatttaaacctgtttttaatcct 48936361  T
Q  317 atcctattgagcctttgtaattcttatccttagtttt 353  Q
    |||||| |   ||||||| ||| ||||||||||||||    
T  48936360 atcctacttctcctttgttatttttatccttagtttt 48936324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 364
Target Start/End: Original strand, 40416932 - 40417051
Alignment:
Q  245 tatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatc 344  Q
    |||| |||||||  |||||||||||||||||||| |||||| ||||||||| || || || ||| |||||||||||||   | ||||| | |||||||||    
T  40416932 tatcatatcctgcttcaatccgttgtttggtgcatcaacagaaaatgataaattaaatatatttttaatcctatcctaccaaccctttattattcttatc 40417031  T
Q  345 cttagtttttggtgggttag 364  Q
    ||| ||||||| | ||||||    
T  40417032 cttggtttttgtttggttag 40417051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 44764106 - 44764062
Alignment:
Q  340 ttatccttagtttttggtgggttagaattatcctatcatgattag 384  Q
    ||||||||||||||||| || ||||||||||||||||||||||||    
T  44764106 ttatccttagtttttggcggattagaattatcctatcatgattag 44764062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 364
Target Start/End: Original strand, 32490846 - 32491006
Alignment:
Q  204 ccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaaca 303  Q
    |||||||||| ||||||||| |||||| |||||||| | | |||| ||| ||   | ||||| |||||||||||||||| | |||| |||||    |||     
T  32490846 ccgtttggtgcgcaggataaagagacaggatatgataacactatcatattctatttaaatcctttgtttggtgcaccaatatgaaaggataatcgaaacc 32490945  T
Q  304 tgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
    | || ||||| |||||||||  | ||||||| ||| | |||||||||||| | ||||||||    
T  32490946 tattgctaattctatcctatcaatcctttgttattttaatccttagttttagctgggttag 32491006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 364
Target Start/End: Original strand, 7038604 - 7038707
Alignment:
Q  261 aatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtggg 360  Q
    ||||| || |||||| ||| || |||| ||||||| || ||| | || ||||||||||| |||| | | ||||||||||| ||||||| |||||| ||||    
T  7038604 aatccattatttggtacactaataggatatgataaattaaacctattactaatcctatcgtattcatcttttgtaattctaatccttactttttgttggg 7038703  T
Q  361 ttag 364  Q
    ||||    
T  7038704 ttag 7038707  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 38457782 - 38457840
Alignment:
Q  306 tttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
    ||||||||||||||||||| | | ||||| | | ||||||||||| |||||||||||||    
T  38457782 tttctaatcctatcctattcaccttttgttacttttatccttagtatttggtgggttag 38457840  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 364
Target Start/End: Complemental strand, 8573895 - 8573800
Alignment:
Q  269 gtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 364  Q
    |||||| ||| ||| |||||||||||| || ||| | ||||||||| |||| |||| | ||||||| ||| |||| ||||||||||||||||||||    
T  8573895 gtttggagcatcaataggaaatgataacttaaacctatttctaatcttatcatattcaccctttgttatttttatacttagtttttggtgggttag 8573800  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 364
Target Start/End: Complemental strand, 8547552 - 8547447
Alignment:
Q  259 tcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtg 358  Q
    ||||||||  |||||| ||| ||| |||||| ||||| || ||| | ||||||||| |||| |||| | ||||||| ||| |||| ||||||||||||||    
T  8547552 tcaatccgccgtttggagcatcaataggaaaggataacttaaacctatttctaatcttatcatattcaccctttgttatttttatacttagtttttggtg 8547453  T
Q  359 ggttag 364  Q
    ||||||    
T  8547452 ggttag 8547447  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 10099032 - 10099104
Alignment:
Q  206 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgca 278  Q
    |||||||| ||||||||  |||||| ||||||||||| |||||||||| |  |||||||   |||||||||||    
T  10099032 gtttggtgcgcaggatagagagacaggatatgattagcatatcctatcatatctcaatcttctgtttggtgca 10099104  T

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