View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5705_low_1 (Length: 785)

Name: NF5705_low_1
Description: NF5705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5705_low_1
NF5705_low_1
[»] chr7 (28 HSPs)
chr7 (1-446)||(45758094-45758558)
chr7 (467-745)||(45757819-45758096)
chr7 (161-230)||(43346777-43346846)
chr7 (162-230)||(27028321-27028389)
chr7 (160-230)||(13095900-13095970)
chr7 (162-230)||(38578866-38578934)
chr7 (160-226)||(22993364-22993430)
chr7 (160-226)||(23658225-23658291)
chr7 (161-230)||(8734684-8734753)
chr7 (161-230)||(21190778-21190847)
chr7 (160-225)||(32768984-32769049)
chr7 (160-226)||(5069812-5069878)
chr7 (160-230)||(21530790-21530860)
chr7 (161-230)||(24969324-24969393)
chr7 (161-230)||(34659268-34659337)
chr7 (161-230)||(45697188-45697257)
chr7 (161-230)||(48804725-48804794)
chr7 (162-230)||(3603399-3603467)
chr7 (178-230)||(16802165-16802217)
chr7 (178-230)||(38988942-38988994)
chr7 (162-230)||(41945515-41945583)
chr7 (160-227)||(28744207-28744274)
chr7 (160-223)||(48244353-48244416)
chr7 (160-230)||(17748379-17748449)
chr7 (160-230)||(42210259-42210329)
chr7 (160-230)||(43861969-43862039)
chr7 (160-230)||(47341918-47341988)
chr7 (161-230)||(39474982-39475051)
[»] chr5 (31 HSPs)
chr5 (160-230)||(4016252-4016322)
chr5 (160-228)||(40773315-40773383)
chr5 (160-230)||(38897716-38897786)
chr5 (160-230)||(19572764-19572834)
chr5 (160-230)||(21375391-21375461)
chr5 (182-228)||(30995163-30995209)
chr5 (160-230)||(42086367-42086437)
chr5 (162-231)||(2485235-2485304)
chr5 (161-230)||(14728123-14728192)
chr5 (161-222)||(28857194-28857255)
chr5 (182-230)||(20228757-20228805)
chr5 (176-230)||(6764470-6764524)
chr5 (160-230)||(9805044-9805114)
chr5 (160-230)||(39099776-39099846)
chr5 (161-226)||(7866625-7866690)
chr5 (161-230)||(8513559-8513628)
chr5 (161-230)||(18294482-18294551)
chr5 (161-230)||(20255409-20255478)
chr5 (161-206)||(28857013-28857058)
chr5 (176-229)||(41801018-41801071)
chr5 (179-230)||(22295256-22295307)
chr5 (163-230)||(35561818-35561885)
chr5 (160-230)||(1538471-1538541)
chr5 (160-230)||(3653911-3653981)
chr5 (160-230)||(5731917-5731987)
chr5 (160-230)||(13664300-13664370)
chr5 (160-230)||(42861215-42861285)
chr5 (160-229)||(5079372-5079440)
chr5 (161-230)||(20682615-20682684)
chr5 (161-230)||(40117455-40117524)
chr5 (161-230)||(43399168-43399237)
[»] chr1 (32 HSPs)
chr1 (161-230)||(16956506-16956575)
chr1 (161-226)||(40288476-40288541)
chr1 (160-230)||(34719816-34719886)
chr1 (160-230)||(8764031-8764101)
chr1 (160-230)||(17642002-17642072)
chr1 (160-226)||(18915911-18915977)
chr1 (160-230)||(37339860-37339930)
chr1 (160-230)||(43959819-43959889)
chr1 (161-230)||(4581681-4581750)
chr1 (162-230)||(2567316-2567384)
chr1 (176-230)||(15466005-15466059)
chr1 (160-230)||(26325852-26325922)
chr1 (161-227)||(26660181-26660246)
chr1 (160-230)||(49078154-49078224)
chr1 (161-226)||(2980930-2980995)
chr1 (161-230)||(5855562-5855631)
chr1 (161-230)||(10172970-10173039)
chr1 (162-227)||(50371834-50371899)
chr1 (161-229)||(11397888-11397956)
chr1 (178-230)||(21849221-21849273)
chr1 (180-230)||(18708558-18708608)
chr1 (160-230)||(41663854-41663924)
chr1 (161-230)||(6899598-6899667)
chr1 (161-230)||(9659178-9659247)
chr1 (161-230)||(10422828-10422897)
chr1 (161-226)||(15238105-15238170)
chr1 (177-230)||(25165440-25165493)
chr1 (161-230)||(32142845-32142914)
chr1 (161-230)||(33418114-33418183)
chr1 (67-100)||(42694469-42694502)
chr1 (161-230)||(45361881-45361950)
chr1 (161-230)||(50503360-50503429)
[»] chr3 (34 HSPs)
chr3 (163-230)||(3507534-3507601)
chr3 (160-226)||(7310701-7310767)
chr3 (160-226)||(28572209-28572275)
chr3 (161-231)||(50753340-50753410)
chr3 (160-229)||(13893966-13894035)
chr3 (162-226)||(30767247-30767311)
chr3 (167-230)||(50405608-50405671)
chr3 (163-230)||(51682955-51683022)
chr3 (160-230)||(3136692-3136762)
chr3 (160-226)||(15320229-15320295)
chr3 (160-230)||(29127958-29128028)
chr3 (161-223)||(47164152-47164214)
chr3 (160-229)||(44064584-44064653)
chr3 (161-230)||(55069678-55069747)
chr3 (162-230)||(54261265-54261333)
chr3 (179-230)||(43330749-43330800)
chr3 (176-230)||(8164592-8164646)
chr3 (160-230)||(24506646-24506716)
chr3 (160-230)||(26043851-26043921)
chr3 (160-226)||(26361965-26362031)
chr3 (160-230)||(34374440-34374510)
chr3 (160-218)||(36043672-36043730)
chr3 (176-230)||(41630526-41630580)
chr3 (160-230)||(47219183-47219253)
chr3 (160-230)||(47749103-47749173)
chr3 (160-230)||(49021201-49021271)
chr3 (161-230)||(2668100-2668169)
chr3 (161-230)||(10043721-10043790)
chr3 (161-220)||(7650276-7650335)
chr3 (176-231)||(45402365-45402420)
chr3 (161-230)||(7328883-7328951)
chr3 (161-230)||(7648779-7648848)
chr3 (161-230)||(23511606-23511675)
chr3 (161-230)||(30045860-30045929)
[»] chr6 (24 HSPs)
chr6 (160-230)||(9633622-9633692)
chr6 (160-230)||(30788850-30788920)
chr6 (161-230)||(3601127-3601196)
chr6 (160-230)||(5029860-5029930)
chr6 (160-230)||(21898691-21898761)
chr6 (160-230)||(29444762-29444832)
chr6 (161-230)||(5253221-5253290)
chr6 (176-225)||(14326045-14326094)
chr6 (176-225)||(14419055-14419104)
chr6 (161-230)||(30410488-30410557)
chr6 (160-230)||(12606473-12606543)
chr6 (160-230)||(12635857-12635927)
chr6 (160-226)||(19089545-19089611)
chr6 (163-230)||(11142646-11142713)
chr6 (186-229)||(33940055-33940098)
chr6 (160-230)||(8932704-8932774)
chr6 (160-230)||(8944170-8944240)
chr6 (160-230)||(13468976-13469046)
chr6 (160-230)||(14107355-14107425)
chr6 (160-226)||(14783417-14783483)
chr6 (180-226)||(19230576-19230622)
chr6 (176-213)||(3030656-3030693)
chr6 (160-225)||(6606094-6606159)
chr6 (161-230)||(10311467-10311536)
[»] chr2 (33 HSPs)
chr2 (160-230)||(12455349-12455419)
chr2 (160-230)||(10823099-10823169)
chr2 (161-230)||(25540402-25540471)
chr2 (161-226)||(41031904-41031969)
chr2 (178-230)||(45263682-45263734)
chr2 (160-230)||(8410170-8410240)
chr2 (160-226)||(34346284-34346350)
chr2 (160-230)||(38005441-38005511)
chr2 (160-230)||(44945632-44945702)
chr2 (161-230)||(28616377-28616446)
chr2 (162-230)||(18649025-18649093)
chr2 (167-230)||(10669631-10669694)
chr2 (160-226)||(2528338-2528404)
chr2 (160-226)||(7747317-7747383)
chr2 (160-230)||(22593173-22593242)
chr2 (160-230)||(41220674-41220744)
chr2 (182-227)||(7787098-7787143)
chr2 (161-230)||(10026614-10026683)
chr2 (161-230)||(18902528-18902597)
chr2 (197-230)||(39806919-39806952)
chr2 (161-230)||(44139523-44139592)
chr2 (162-230)||(9360747-9360815)
chr2 (162-230)||(21286483-21286551)
chr2 (163-230)||(10046477-10046544)
chr2 (160-230)||(331540-331610)
chr2 (178-228)||(3848929-3848979)
chr2 (160-230)||(15234058-15234128)
chr2 (187-229)||(20533158-20533200)
chr2 (176-226)||(39201521-39201571)
chr2 (160-229)||(3811688-3811757)
chr2 (162-227)||(16813164-16813229)
chr2 (162-227)||(16852443-16852508)
chr2 (160-229)||(20116609-20116678)
[»] scaffold0291 (1 HSPs)
scaffold0291 (161-230)||(6897-6966)
[»] chr8 (18 HSPs)
chr8 (161-230)||(43032944-43033013)
chr8 (163-230)||(15884556-15884623)
chr8 (161-230)||(45521211-45521280)
chr8 (160-226)||(2964123-2964189)
chr8 (161-227)||(8997542-8997608)
chr8 (160-230)||(10927649-10927719)
chr8 (161-226)||(17981488-17981553)
chr8 (161-230)||(34710565-34710634)
chr8 (161-230)||(39969913-39969982)
chr8 (161-229)||(43027349-43027417)
chr8 (163-230)||(4479296-4479363)
chr8 (160-227)||(22212512-22212579)
chr8 (160-230)||(583855-583925)
chr8 (160-230)||(8803097-8803167)
chr8 (160-230)||(11298264-11298334)
chr8 (176-230)||(12754068-12754122)
chr8 (160-230)||(14846618-14846688)
chr8 (184-229)||(13831035-13831080)
[»] chr4 (32 HSPs)
chr4 (161-230)||(47078502-47078571)
chr4 (162-230)||(14124060-14124128)
chr4 (160-230)||(36262764-36262834)
chr4 (161-230)||(38166071-38166140)
chr4 (162-230)||(7246645-7246713)
chr4 (162-230)||(14567283-14567351)
chr4 (160-230)||(1940774-1940844)
chr4 (161-230)||(3159467-3159536)
chr4 (161-230)||(5472846-5472915)
chr4 (161-226)||(16645166-16645231)
chr4 (161-230)||(48834698-48834767)
chr4 (161-230)||(55921078-55921147)
chr4 (183-230)||(3574466-3574513)
chr4 (163-230)||(40780861-40780928)
chr4 (160-230)||(21192684-21192754)
chr4 (164-230)||(21429345-21429411)
chr4 (176-230)||(49260678-49260732)
chr4 (161-230)||(15732446-15732515)
chr4 (161-230)||(47682380-47682449)
chr4 (162-230)||(2559351-2559419)
chr4 (166-230)||(3507314-3507378)
chr4 (162-230)||(15839934-15840002)
chr4 (162-230)||(42722576-42722644)
chr4 (163-230)||(48352509-48352576)
chr4 (176-227)||(54946296-54946347)
chr4 (160-230)||(36145212-36145282)
chr4 (176-230)||(53354576-53354630)
chr4 (160-230)||(53599104-53599174)
chr4 (161-230)||(17080087-17080156)
chr4 (177-230)||(23788441-23788494)
chr4 (161-230)||(24166494-24166563)
chr4 (160-225)||(38168305-38168370)
[»] scaffold0009 (1 HSPs)
scaffold0009 (162-230)||(42831-42899)
[»] scaffold0010 (1 HSPs)
scaffold0010 (160-230)||(155708-155778)
[»] scaffold0005 (1 HSPs)
scaffold0005 (162-230)||(250024-250092)
[»] scaffold0029 (1 HSPs)
scaffold0029 (160-226)||(41090-41156)
[»] scaffold0006 (1 HSPs)
scaffold0006 (160-230)||(68556-68626)
[»] scaffold0011 (2 HSPs)
scaffold0011 (162-230)||(224359-224427)
scaffold0011 (163-230)||(186559-186626)
[»] scaffold0170 (1 HSPs)
scaffold0170 (168-230)||(9887-9949)
[»] scaffold0002 (1 HSPs)
scaffold0002 (161-226)||(616-681)
[»] scaffold0209 (1 HSPs)
scaffold0209 (160-230)||(12615-12685)
[»] scaffold0116 (1 HSPs)
scaffold0116 (176-230)||(17432-17486)
[»] scaffold0316 (1 HSPs)
scaffold0316 (161-230)||(1612-1681)


Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 45758558 - 45758094
Alignment:
Q  1 tagcgagtcattatttaaaagttttttcttcgatacatagcattctcttttatttatattacatgagttaaatatgtttttctccctataaatatactaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45758558 tagcgagtcattatttaaaagttttttcttcgatacatagcattctcttttatttatattacatgagttaaatatgtttttctccctataaatatactaa 45758459  T
Q  101 catttgtttttagtcat--catnnnnnnnnntcaaatttttatccaaaacataannnnnnnggctttcgcactggtgtccgacccaccaaagatgagcga 198  Q
    |||||||||||||||||  ||          |||||||||||||||||||||||       ||||||||||| ||| ||||||||||||||| || ||||    
T  45758458 catttgtttttagtcatcacaaaaaaaaaaatcaaatttttatccaaaacataatttttttggctttcgcacgggtttccgacccaccaaaggtgtgcga 45758359  T
Q  199 ctaatccgactcgtgtgtagaggcatgcgca-----caagtgatacattgatattggtgagtccttaaaatattgttaactaaacaagttaatcatttaa 293  Q
     |||||| ||||  |||||||||||||||||     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  45758358 ttaatccaactc--gtgtagaggcatgcgcactggccaagtgatacattgatattggtgaggccttaaaatattgttaactaaacaagttaatcatttca 45758261  T
Q  294 tcgctaagtgaaaataaataaaacaaaattattt-----------tatcggattttaaattttgggtaaactattatgtatcaatcaattgcctctattt 382  Q
    |||| |||||||||||||||||||||||||||||           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45758260 tcgccaagtgaaaataaataaaacaaaattatttattattttatatatcggatttttaattttgggtaaactattatgtatcaatcaattgcctctattt 45758161  T
Q  383 catgtgaggtgacgtatag---agtacacaaattattttttgtttaccgatacaaaaatggttaatt 446  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  45758160 catgtgaggtgacgtatagattagtacacaaattattttttgtttaccgatacaaaaatggttaatt 45758094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 467 - 745
Target Start/End: Complemental strand, 45758096 - 45757819
Alignment:
Q  467 attctcatatattctacttgttcattgctctaatatcataatacttcggtgctcttctcttatttgagatgatatctacaaaactcactcttccgtcatg 566  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45758096 attctcatatattctacttgttcattgctcta-tatcataatacttcggtgctcttctcttatttgagatgatatctacaaaactcactcttccgtcatg 45757998  T
Q  567 ttttggtcgaccaacgacctaaccgacaacattgtcaagtgtcccaccttgaggctggatagtggttgcagtgtggtgccggaacagcaacgtgaaggcg 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45757997 ttttggtcgaccaacgacctaaccgacaacattgtcaagtgtcccaccttgaggctggatagtggttgcagtgtggtgccggaacagcaacgtgaaggcg 45757898  T
Q  667 gtaatcaaccattgtgtaccgtagctgccatcatggtgtaaaagttttgcagcattaattattttgatcaatttatatt 745  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  45757897 gtaatcaaccattgtgtaccgtagctgccatcatggtgtaaaagttttgcgtcattaattattttgatcaatttatatt 45757819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 43346777 - 43346846
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  43346777 gctttcgcactggtttccgacccaccaaagatgagcgactaatccggctcgtacgtagaggcatgcgcac 43346846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 27028389 - 27028321
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||||  ||| |||||||||||||||||||    
T  27028389 ctttcgcaccggtttccgacccaccaaaggtgagcgactaatccagctcatgtgtagaggcatgcgcac 27028321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 13095970 - 13095900
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||| |||| ||| ||||||||||||||| ||||||||||||||| ||| || ||||||||||||||||    
T  13095970 ggcttttgcaccggtttccgacccaccaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcac 13095900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 38578866 - 38578934
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| ||| ||||||||||||||| || |||||||||||| ||| || ||||||||||||||||    
T  38578866 ctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcac 38578934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 22993364 - 22993430
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    ||||||||||| ||| || |||||||||||| |||||||||||||||  ||||| ||||||||||||    
T  22993364 ggctttcgcaccggtttctgacccaccaaaggtgagcgactaatccggttcgtgcgtagaggcatgc 22993430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 23658291 - 23658225
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    |||||| |||| ||| || |||||||||||||||  ||||||||||| |||||||||||||||||||    
T  23658291 ggcttttgcacaggtttctgacccaccaaagatggacgactaatccggctcgtgtgtagaggcatgc 23658225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 8734684 - 8734753
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||||||||| || |||||||||| | |||||| || |||||||||||||    
T  8734684 gctttcgcaccggtttccgacccaccaaaggtgggcgactaatctggctcgtgcgttgaggcatgcgcac 8734753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 21190778 - 21190847
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| | ||||||||||  |||| |||||||||| |||||||| ||||||||||||||||    
T  21190778 gctttcgcaccggttttcgacccaccattgatgggcgactaatctgactcgtgcgtagaggcatgcgcac 21190847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 32769049 - 32768984
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatg 225  Q
    ||||||| ||| ||| ||||| ||||||||| ||| |||||||||||||||||| |||||||||||    
T  32769049 ggctttcacaccggtttccgatccaccaaaggtgaacgactaatccgactcgtgcgtagaggcatg 32768984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 5069812 - 5069878
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    ||||||||||  ||| ||||||||||||||| || |||||||||||| || ||| ||||||||||||    
T  5069812 ggctttcgcatcggtttccgacccaccaaaggtgggcgactaatccggcttgtgcgtagaggcatgc 5069878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 21530860 - 21530790
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||| || ||| ||||||||||||||| ||||||| |||| || |||||| ||||||||||| ||||    
T  21530860 ggctttcgaaccggtttccgacccaccaaaggtgagcgattaattcggctcgtgcgtagaggcatgtgcac 21530790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 24969324 - 24969393
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||| ||| ||||||||||||| |||||||||| ||  ||||||||| ||||||    
T  24969324 gctttcgcaccggtttccgagccatcaaagatgagcgattaatccgacttgtacgtagaggcacgcgcac 24969393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 34659337 - 34659268
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| | |||| |||||| | || |||||||||||| |||||| ||||||||||||||||    
T  34659337 gctttcgcaccggttttcgacacaccaatggtgggcgactaatccggctcgtgcgtagaggcatgcgcac 34659268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 45697188 - 45697257
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||| |||||| ||||||||||||||| ||  ||||||| || |||| || ||||||||||||||||    
T  45697188 gctttcgtactggtttccgacccaccaaaggtggacgactaacccaactcatgcgtagaggcatgcgcac 45697257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 48804794 - 48804725
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||||||| | ||  ||||||||||| ||| || ||||||||||||||||    
T  48804794 gctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcac 48804725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 3603467 - 3603399
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| | | ||||||||||||||  ||| ||| ||||||| |||||| ||||||||||||||||    
T  3603467 ctttcgcaccgatttccgacccaccaaaagtgaacgattaatccggctcgtgcgtagaggcatgcgcac 3603399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 16802217 - 16802165
Alignment:
Q  178 cgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| | ||||||||||||||| |||||| |||||||||| |||||    
T  16802217 cgacccaccaatggtgagcgactaatccggctcgtgcgtagaggcatacgcac 16802165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 38988994 - 38988942
Alignment:
Q  178 cgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||||||||||||||||||||  || || ||||||||||| ||||    
T  38988994 cgacccaccaaagatgagcgactaatccggttcatgcgtagaggcatgtgcac 38988942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 41945583 - 41945515
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| | | |||||| |||||||| ||  ||||||||||| |||||| ||||||||||||||||    
T  41945583 ctttcgcaccgatttccgactcaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcac 41945515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 28744274 - 28744207
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcg 227  Q
    |||||||||||  || ||||||||||||||| ||  ||||||||||| ||||| |||||||| |||||    
T  28744274 ggctttcgcaccagtttccgacccaccaaaggtggacgactaatccggctcgtatgtagaggtatgcg 28744207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 48244353 - 48244416
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggca 223  Q
    ||||||||||| ||| | ||| ||||||||| ||||||||||||||| ||| || |||||||||    
T  48244353 ggctttcgcaccggttttcgatccaccaaaggtgagcgactaatccggctcatgcgtagaggca 48244416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 17748379 - 17748449
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||  ||| ||||||||| ||||| ||  ||||||||||| |||||  ||||||||||||||||    
T  17748379 ggctttcgcatcggtttccgacccaacaaaggtggacgactaatccggctcgtacgtagaggcatgcgcac 17748449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 42210259 - 42210329
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||  ||| ||||||||||||| | || | || ||||||| |||||| ||||||||||||||||    
T  42210259 ggctttcgcatcggtttccgacccaccaacggtgggtgattaatccggctcgtgcgtagaggcatgcgcac 42210329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 43861969 - 43862039
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| | ||| ||||||||| |||  |||||||||| ||| || ||||||||||||||||    
T  43861969 ggctttcgcaccggttttcgatccaccaaaggtgaatgactaatccggctcatgcgtagaggcatgcgcac 43862039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 47341988 - 47341918
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| | | ||||||||||||| | ||| |||| |||||  |||||| ||||||||||||||||    
T  47341988 ggctttcgcaccgatttccgacccaccaatggtgaacgaccaatcctgctcgtgcgtagaggcatgcgcac 47341918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 39475051 - 39474982
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||||| | |||||||| |||| ||  ||||||||||| ||| || ||||||| ||||||||    
T  39475051 gctttcgcactggttttcgacccactaaaggtggacgactaatccggctcatgcgtagaggtatgcgcac 39474982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 4016252 - 4016322
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||||||| ||||||||||||| | ||||| ||||||||| |||||||||||||||||||||||    
T  4016252 ggctttcgcactggtttccgacccaccaatggtgagcaactaatccggctcgtgtgtagaggcatgcgcac 4016322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 40773383 - 40773315
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgc 228  Q
    ||||||||||| ||| |||||| |||||||||||| ||||||||||||||||| |||||||||||||||    
T  40773383 ggctttcgcaccggtttccgacgcaccaaagatgaacgactaatccgactcgtatgtagaggcatgcgc 40773315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 38897716 - 38897786
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||||||| ||||| ||||||||| || || ||||||||| |||||| ||||||||||||||||    
T  38897716 ggctttcgcactggtttccgatccaccaaaggtgggcaactaatccggctcgtgcgtagaggcatgcgcac 38897786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 19572834 - 19572764
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||||||| ||| ||||||||| | ||| ||||||||||| ||| || ||||||||||||||||    
T  19572834 ggctttcgcactggtttccaacccaccaatggtgaacgactaatccggctcatgcgtagaggcatgcgcac 19572764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 21375461 - 21375391
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||||||| ||||| ||| ||||||||  ||||||||||||||| || ||||| ||||||||||    
T  21375461 ggctttcgcactggtttccgatccatcaaagatggacgactaatccgactcatgcgtagaagcatgcgcac 21375391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 30995209 - 30995163
Alignment:
Q  182 ccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgc 228  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||    
T  30995209 ccaccaaagatgagcgactaatccggctcgtgcgtagaggcatgcgc 30995163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 42086437 - 42086367
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||||||||||||| ||  ||||||||||| ||| || ||||||||||||||||    
T  42086437 ggctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcac 42086367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 2485304 - 2485235
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcaca 231  Q
    ||||||||  ||| ||||||||| ||||| ||||||||||||||||||| |  |||||||||||||||||    
T  2485304 ctttcgcatcggtttccgacccatcaaaggtgagcgactaatccgactcatacgtagaggcatgcgcaca 2485235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 14728192 - 14728123
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||| ||||| ||||| ||||||||| ||| || ||||||||||||||||    
T  14728192 gctttcgcaccggtttccgacccatcaaaggtgagcaactaatccggctcatgcgtagaggcatgcgcac 14728123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 28857255 - 28857194
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggc 222  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||||| ||| || ||||||||    
T  28857255 gctttcgcaccggtttccgacccaccaaaggtgagcgactaatccggctcatgcgtagaggc 28857194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 20228805 - 20228757
Alignment:
Q  182 ccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||| |||||||||| ||||||||||||||||||| |||||    
T  20228805 ccaccaaagatgggcgactaatctgactcgtgtgtagaggcatacgcac 20228757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 6764470 - 6764524
Alignment:
Q  176 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| |||||||  |||||||||||| |||||| ||||||||||||||||    
T  6764470 tccgacccaacaaagataggcgactaatccggctcgtgcgtagaggcatgcgcac 6764524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 9805114 - 9805044
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||  || ||||||||||||||| ||  ||||||||||| ||| || ||||||||||||||||    
T  9805114 ggctttcgcacctgtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcac 9805044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 39099776 - 39099846
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||| |||| ||| ||||||||||||||| || |||||||||||| ||| || ||||||||||| ||||    
T  39099776 ggcttttgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgtgcac 39099846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 7866690 - 7866625
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    |||||||||||||| ||  ||||||||||| || ||||||||||||  ||||| ||||||||||||    
T  7866690 gctttcgcactggtttctaacccaccaaaggtgggcgactaatccggttcgtgcgtagaggcatgc 7866625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 8513628 - 8513559
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||||||||| ||  ||||||||| | |||||| ||||||||||| ||||    
T  8513628 gctttcgcaccggtttccgacccaccaaaggtggacgactaatctggctcgtgcgtagaggcatgtgcac 8513559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 18294482 - 18294551
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||| ||| |||| |||||||||||||||||| |||| |||||||  || |||||||||| ||||||||    
T  18294482 gcttttgcattggtttccgacccaccaaagatgggcgattaatccggttcatgtgtagaggtatgcgcac 18294551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 20255478 - 20255409
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||  || |||||| |||||||| ||  ||||||||||||||| || ||||||||||||||||    
T  20255478 gctttcgcaccagtttccgactcaccaaaggtggacgactaatccgactcatgcgtagaggcatgcgcac 20255409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 28857058 - 28857013
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccg 206  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||||    
T  28857058 gctttcgcaccggtttccgacccaccaaaggtgagcgactaatccg 28857013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 41801071 - 41801018
Alignment:
Q  176 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgca 229  Q
    ||||||||| ||||||||| ||||||||||| |||||| |||||| ||||||||    
T  41801071 tccgacccatcaaagatgaacgactaatccggctcgtgcgtagagacatgcgca 41801018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 22295307 - 22295256
Alignment:
Q  179 gacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||| ||||||||| |||||||||||| |||| || ||||||||||||||||    
T  22295307 gacctaccaaagataagcgactaatccaactcatgcgtagaggcatgcgcac 22295256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 35561818 - 35561885
Alignment:
Q  163 tttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||| ||||| | ||||||| ||||| | ||||||||||||| | ||| |||||||||||||||||||    
T  35561818 tttcacactgatttccgacctaccaacggtgagcgactaatctggctcatgtgtagaggcatgcgcac 35561885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 1538541 - 1538471
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||||||||||| | ||  ||| ||||||| ||| || ||||||||||||||||    
T  1538541 ggctttcgcaccggtttccgacccaccaatggtggacgattaatccggctcatgcgtagaggcatgcgcac 1538471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 3653911 - 3653981
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||| |||| ||| | ||| ||||||||| ||  ||||||||||| |||||| ||||||||||||||||    
T  3653911 ggcttttgcaccggttttcgatccaccaaaggtggacgactaatccgcctcgtgcgtagaggcatgcgcac 3653981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 5731917 - 5731987
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| |||||||||| |||| ||| ||||||||| | ||| |  ||||||||||||||||    
T  5731917 ggctttcgcaccggtttccgacccactaaaggtgaacgactaatctggctcatacgtagaggcatgcgcac 5731987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 13664370 - 13664300
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| |||||| |||||||| ||| ||| ||||| | ||| || ||||||||||||||||    
T  13664370 ggctttcgcaccggtttccgacacaccaaaggtgatcgattaatctggctcatgcgtagaggcatgcgcac 13664300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 42861215 - 42861285
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||||||||||| | ||  ||| ||||||| ||| || ||||||||||||||||    
T  42861215 ggctttcgcaccggtctccgacccaccaatggtggacgattaatccggctcatgcgtagaggcatgcgcac 42861285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 5079440 - 5079372
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgca 229  Q
    ||||||||||| ||| | ||||| ||||||| || |||||||||||| |||||| ||||| |||||||||    
T  5079440 ggctttcgcaccggttttcgacc-accaaaggtgggcgactaatccggctcgtgcgtagaagcatgcgca 5079372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 20682615 - 20682684
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||| |||||| |||| ||  ||| ||||||| |||||| ||||||||||||||||    
T  20682615 gctttcgcaccggtttccaacccactaaaggtggtcgattaatccggctcgtgcgtagaggcatgcgcac 20682684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 40117524 - 40117455
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| | ||| ||||||||| ||| ||| ||||||| ||| || ||||||||||||||||    
T  40117524 gctttcgcaccggttttcgatccaccaaaggtgaacgattaatccggctcatgcgtagaggcatgcgcac 40117455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 43399237 - 43399168
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||| ||||||  ||  ||||||||||  |||||| ||||||||||||||||    
T  43399237 gctttcgcaccggtttccgaccaaccaaatgtggacgactaatcctgctcgtgcgtagaggcatgcgcac 43399168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 16956575 - 16956506
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||| |||||| ||||||||||||||||    
T  16956575 gctttcgcactggtttccgacccaccaaaggtgagtgactaatccggctcgtgcgtagaggcatgcgcac 16956506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 40288476 - 40288541
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    ||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  40288476 gcttttgcactggtttccgacccaccaaggatgagcgactaatccggctcgtgtgtagaggcatgc 40288541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 34719886 - 34719816
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||  || ||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||    
T  34719886 ggctttcgcaccagtttccgacccaccaaaggtgagcgactaatctgactcgtgcgtagaggcatgcgcac 34719816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 8764101 - 8764031
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||||||||||| | ||  ||||||||||| |||||| ||||||||||||||||    
T  8764101 ggctttcgcaccggtttccgacccaccaacggtggacgactaatccggctcgtgcgtagaggcatgcgcac 8764031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 17642002 - 17642072
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||  || ||||||||||||||| ||  ||||||||||| |||||| ||||||||||||||||    
T  17642002 ggctttcgcaccagtttccgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcac 17642072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 18915977 - 18915911
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    ||||||||||| ||| ||| ||||||||| | ||||||||||||||| |||||| ||||||||||||    
T  18915977 ggctttcgcaccggtttccaacccaccaatggtgagcgactaatccggctcgtgcgtagaggcatgc 18915911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 37339930 - 37339860
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||| ||||||||||| || |||||||||||| |||||| || |||||||||||||    
T  37339930 ggctttcgcaccggtttccaacccaccaaaggtgggcgactaatccggctcgtgcgttgaggcatgcgcac 37339860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 43959819 - 43959889
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||| |||| |||| || |||||||||||| |||||| ||||||||||||||||    
T  43959819 ggctttcgcaccggtttccgatccactaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcac 43959889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 4581681 - 4581750
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||||||||| ||  |||||| |||| |||||| ||||||||||||||||    
T  4581681 gctttcgcaccggtttccgacccaccaaaggtggacgactattccggctcgtgcgtagaggcatgcgcac 4581750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 2567384 - 2567316
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||| || ||| ||||||||||||||||||  || |||||| |||||||| ||||||||||||||||    
T  2567384 ctttcgtaccggtttccgacccaccaaagatggacggctaatctgactcgtgagtagaggcatgcgcac 2567316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 15466059 - 15466005
Alignment:
Q  176 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||||||| |||||||| |||| |||||||| ||||||||||| ||||    
T  15466059 tccgacccaccaaaggtgagcgaccaatcagactcgtgcgtagaggcatgtgcac 15466005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 26325922 - 26325852
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||||||||||| | ||  ||||||||||| ||| || ||||||||||||||||    
T  26325922 ggctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcac 26325852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 26660246 - 26660181
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcg 227  Q
    |||||||||| ||| ||||||||||||||| || |||||||||||| ||| || |||||||||||||    
T  26660246 gctttcgcaccggtttccgacccaccaaaggtg-gcgactaatccggctcatgcgtagaggcatgcg 26660181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 49078224 - 49078154
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||||| ||||| | ||| ||||||||||| ||| || ||||||||||||||||    
T  49078224 ggctttcgcaccggtttccgacctaccaatggtgaacgactaatccggctcatgcgtagaggcatgcgcac 49078154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 2980930 - 2980995
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    |||||||||| | | |||||||||| ||| |||  |||||||||||||||||| ||||||||||||    
T  2980930 gctttcgcaccgatttccgacccactaaacatggacgactaatccgactcgtgcgtagaggcatgc 2980995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 5855631 - 5855562
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||  ||| |||||||||| |||| ||| ||||||||||| ||| || ||||||||||||||||    
T  5855631 gctttcgcatcggtttccgacccactaaaggtgaacgactaatccgcctcatgcgtagaggcatgcgcac 5855562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 10172970 - 10173039
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||||||||| || |||| ||||||| ||| || ||||||||||| ||||    
T  10172970 gctttcgcaccggtttccgacccaccaaaggtgggcgagtaatccggctcatgcgtagaggcatgggcac 10173039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 50371834 - 50371899
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcg 227  Q
    ||||||||| ||| ||||| |||||||||||| |||||||||||| || ||| ||||| |||||||    
T  50371834 ctttcgcaccggtttccgatccaccaaagatgggcgactaatccggcttgtgcgtagaagcatgcg 50371899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 11397888 - 11397956
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgca 229  Q
    |||||||||| | | ||||||||||||||| ||  ||||||||||||||| || |||||||||| ||||    
T  11397888 gctttcgcaccgatttccgacccaccaaaggtggacgactaatccgactcatgcgtagaggcatacgca 11397956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 21849221 - 21849273
Alignment:
Q  178 cgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||   ||||||||||||||| |||||| ||||||||||||||||    
T  21849221 cgacccaccaatagtgagcgactaatccggctcgtgcgtagaggcatgcgcac 21849273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 18708558 - 18708608
Alignment:
Q  180 acccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||| ||||| ||||||||||||| | ||| |||||||||||||||||||    
T  18708558 acccatcaaaggtgagcgactaatctggctcatgtgtagaggcatgcgcac 18708608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 41663854 - 41663924
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||||||||||| | ||  ||||||||||  ||| || ||||||||||||||||    
T  41663854 ggctttcgcaccggtttccgacccaccaatggtggacgactaatccagctcatgcgtagaggcatgcgcac 41663924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 6899667 - 6899598
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||| ||| ||||| || |||||||||||| || ||| ||| ||||||||||||    
T  6899667 gctttcgcaccggtttccgatccatcaaaggtgggcgactaatccggcttgtgcgtaaaggcatgcgcac 6899598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 9659178 - 9659247
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||| ||||||||||| ||  ||||||||||| ||| || ||| ||||||||||||    
T  9659178 gctttcgcaccggtttccaacccaccaaaggtggacgactaatccggctcatgcgtaaaggcatgcgcac 9659247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 10422897 - 10422828
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||  ||||||| ||  ||||||||||| ||| || ||||||||||||||||    
T  10422897 gctttcgcaccggtttccgacttaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcac 10422828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 15238105 - 15238170
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    ||||||| || ||| ||| ||||||||||| ||||||||||||  || ||||| ||||||||||||    
T  15238105 gctttcgaaccggtttccaacccaccaaaggtgagcgactaatatgattcgtgcgtagaggcatgc 15238170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 25165493 - 25165440
Alignment:
Q  177 ccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||||| |||| |||||||||| || |||  |||||||||||||||    
T  25165493 ccgacccaccaaaggtgagtgactaatccggcttgtgcctagaggcatgcgcac 25165440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 32142845 - 32142914
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||  ||| ||||||||| ||||| |||||||||||| || ||| || ||| ||||||||||||    
T  32142845 gctttcgcatcggtttccgacccatcaaaggtgagcgactaattcggctcatgcgtaaaggcatgcgcac 32142914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 33418114 - 33418183
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||| || ||||| ||||||| ||||||| ||  ||||||||||| ||||||  |||||||||||||||    
T  33418114 gcttttgcgctggtttccgaccgaccaaaggtggacgactaatccggctcgtgcatagaggcatgcgcac 33418183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 42694469 - 42694502
Alignment:
Q  67 gttaaatatgtttttctccctataaatatactaa 100  Q
    ||||||||||||||| ||||||||||||||||||    
T  42694469 gttaaatatgtttttgtccctataaatatactaa 42694502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 45361881 - 45361950
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| |||||||||| |||| ||| ||||||||||| ||  || |||| |||||||||||    
T  45361881 gctttcgcaccggtttccgacccactaaaggtgaacgactaatccggcttatgcgtagtggcatgcgcac 45361950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 50503360 - 50503429
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||  ||| ||||||||||||  | || ||||| |||||| |||||| ||||||||||||||||    
T  50503360 gctttcgcatcggtttccgacccaccattggtgggcgacaaatccggctcgtgcgtagaggcatgcgcac 50503429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 3507534 - 3507601
Alignment:
Q  163 tttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||    
T  3507534 tttcgcaccggtttccgacccaccaaaggtgagcgactaatccggctcgtgcgtagaggcatgcgcac 3507601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 7310701 - 7310767
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    ||||||||||  ||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  7310701 ggctttcgcatcggtttccgacccaccaaagatgagcgactaatccggctcgtgcgtagaggcatgc 7310767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 28572209 - 28572275
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    ||||||||||| ||| ||||||||||||||| || |||||||||||| |||||| ||||||||||||    
T  28572209 ggctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgc 28572275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 50753340 - 50753410
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcaca 231  Q
    ||||| |||| ||| ||||||||||||| ||||| |||||||||||||||||| |||||||||||| ||||    
T  50753340 gcttttgcaccggtttccgacccaccaatgatgaacgactaatccgactcgtgcgtagaggcatgcacaca 50753410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 13894035 - 13893966
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgca 229  Q
    ||||||||||| ||| | ||| ||||||||| || |||||||||||| ||||||||||||||||||||||    
T  13894035 ggctttcgcaccggttttcgatccaccaaaggtgggcgactaatccggctcgtgtgtagaggcatgcgca 13893966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 30767247 - 30767311
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    |||||||||| || ||||||||||||||| || |||||||||||| |||||| ||||||||||||    
T  30767247 ctttcgcactagtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgc 30767311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 50405608 - 50405671
Alignment:
Q  167 gcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||| ||| ||||||||||||| | || ||||||||||||||||||| ||||||||||||||||    
T  50405608 gcaccggtttccgacccaccaatggtgggcgactaatccgactcgtgcgtagaggcatgcgcac 50405671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 51682955 - 51683022
Alignment:
Q  163 tttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||| ||||||||||||  | || |||||||||||| |||||||| ||||||||||||||    
T  51682955 tttcgcactggtttccgacccaccattggtgggcgactaatccggctcgtgtggagaggcatgcgcac 51683022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 3136692 - 3136762
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||||| ||||||| ||  ||||||||||||||| || ||||||||||||||||    
T  3136692 ggctttcgcaccggtttccgaccaaccaaaggtggacgactaatccgactcatgcgtagaggcatgcgcac 3136762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 15320295 - 15320229
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    ||||||||||| ||| || |||||||||||| || |||||||||||| |||||| ||||||||||||    
T  15320295 ggctttcgcaccggtttctgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgc 15320229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 29128028 - 29127958
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||  ||| ||||||||||||||| || |||||||||||| ||| || ||||||||||||||||    
T  29128028 ggctttcgcatcggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcac 29127958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 47164214 - 47164152
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggca 223  Q
    |||||| ||| ||| ||||| ||||||||||||||||||||||||| |||||| |||||||||    
T  47164214 gctttcacaccggtttccgatccaccaaagatgagcgactaatccggctcgtgcgtagaggca 47164152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 44064653 - 44064584
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgca 229  Q
    |||||| |||| ||| ||||||||||||||| |||||||||||||||  || || |||||||||||||||    
T  44064653 ggcttttgcaccggtttccgacccaccaaaggtgagcgactaatccggttcatgcgtagaggcatgcgca 44064584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 55069678 - 55069747
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||| |||| ||| ||||||||||||||| ||||||| ||||||| |||||| ||||||||||| ||||    
T  55069678 gcttttgcaccggtttccgacccaccaaaggtgagcgattaatccggctcgtgcgtagaggcatgtgcac 55069747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 54261333 - 54261265
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| ||| |||||||||| |||| ||| ||||||||||| ||| || ||||||||||||||||    
T  54261333 ctttcgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcac 54261265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 43330749 - 43330800
Alignment:
Q  179 gacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||| || |||||||||||| |||||| ||||||||||||||||    
T  43330749 gacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcac 43330800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 8164646 - 8164592
Alignment:
Q  176 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||| ||||||||| || ||||||||||||||||||| ||| ||||||||||||    
T  8164646 tccgatccaccaaaggtgggcgactaatccgactcgtgcgtaaaggcatgcgcac 8164592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 24506646 - 24506716
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||| |||| ||| ||||||||||||| | ||||||||||||| ||||| || ||||||||||| ||||    
T  24506646 ggcttttgcaccggtttccgacccaccaatggtgagcgactaatctgactcatgcgtagaggcatgtgcac 24506716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 26043921 - 26043851
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| | ||| || ||| |||||||| ||||||||||||||| ||| || ||||||||||||||||    
T  26043921 ggctttcgccccggtttctgactcaccaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcac 26043851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 26361965 - 26362031
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    ||||||| ||| ||| ||||||||| ||||| || |||||||||||| |||||| ||||||||||||    
T  26361965 ggctttcacaccggtttccgacccatcaaaggtgtgcgactaatccggctcgtgcgtagaggcatgc 26362031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 34374440 - 34374510
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||| ||| ||| |||||||||||||||| | |||||||||||||||  || || |||||||||||||    
T  34374440 ggctttcacaccggtttccgacccaccaaagaagggcgactaatccgacttatgcgttgaggcatgcgcac 34374510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 36043672 - 36043730
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtag 218  Q
    ||||||||||| ||| ||||||||||||||| || |||||||||||| |||||| ||||    
T  36043672 ggctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtag 36043730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 41630526 - 41630580
Alignment:
Q  176 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||| ||||||| || |||||||||||| ||| |||||||||||||||||||    
T  41630526 tccgaccaaccaaaggtgggcgactaatccggctcatgtgtagaggcatgcgcac 41630580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 47219253 - 47219183
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||||||| ||||| ||  ||||||||||| ||| || ||||||||||||||||    
T  47219253 ggctttcgcaccggtttccgacccatcaaaggtggacgactaatccggctcatgcgtagaggcatgcgcac 47219183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 47749103 - 47749173
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||  ||| ||||||| ||||||| || ||||||||| || |||||| ||||||||||||||||    
T  47749103 ggctttcgcatcggtttccgacctaccaaaggtgggcgactaattcggctcgtgcgtagaggcatgcgcac 47749173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 49021201 - 49021271
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||||||||||| | ||  ||||||||||| ||| || ||||||||||||||||    
T  49021201 ggctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcac 49021271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 2668169 - 2668100
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||| | ||| |||||| |||| ||||||||||||||  ||| || ||||||||||||||||    
T  2668169 gctttcgcactgatttccaacccactaaaggtgagcgactaatccagctcttgcgtagaggcatgcgcac 2668100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 10043790 - 10043721
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||||||| | ||||||| ||||| | |||||| ||||||||||| ||||    
T  10043790 gctttcgcaccggtttccgacccaccaatggtgagcgattaatctgcctcgtgcgtagaggcatgtgcac 10043721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 7650335 - 7650276
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 220  Q
    |||||||||| ||| ||| ||||||||||| || |||||||||||| |||||| ||||||    
T  7650335 gctttcgcaccggtttccaacccaccaaaggtgggcgactaatccggctcgtgcgtagag 7650276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 45402365 - 45402420
Alignment:
Q  176 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcaca 231  Q
    |||||||||| |||| ||| ||||||||||| ||| || |||||||||||||||||    
T  45402365 tccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcaca 45402420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 7328951 - 7328883
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| | ||||||||||||| || |||||||||||| ||| || ||| ||||||||||||    
T  7328951 gctttcgcaccggttttcgacccaccaaaggtgggcgactaatccggctcatgcgta-aggcatgcgcac 7328883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 7648848 - 7648779
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| |||  | ||||||| ||||| || |||||||||||| |||||| ||||||| ||||||||    
T  7648848 gctttcgcattggatttcgacccaacaaaggtgggcgactaatccggctcgtgcgtagaggtatgcgcac 7648779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 23511675 - 23511606
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| | ||||||| ||||| ||  ||| ||||||||||| || ||||||||||||||||    
T  23511675 gctttcgcaccggttttcgacccatcaaaggtggacgattaatccgactcatgcgtagaggcatgcgcac 23511606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 30045929 - 30045860
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| || | ||||||| ||||| ||  ||||||||| |||||||| |||||| |||||||||    
T  30045929 gctttcgcactagtttacgacccatcaaaggtggacgactaatcagactcgtgcgtagagacatgcgcac 30045860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 9633622 - 9633692
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||||||||||||| || |||||||||||| |||||| ||||||||||||||||    
T  9633622 ggctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcac 9633692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 30788850 - 30788920
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||||||||||||| || |||||||||||| ||||||  |||||||||||||||    
T  30788850 ggctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcctagaggcatgcgcac 30788920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 3601196 - 3601127
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||||||||| ||  ||||||||||| |||||||||| ||||||||||||    
T  3601196 gctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgtgtataggcatgcgcac 3601127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 5029930 - 5029860
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||  || ||||||||| |||||||| ||||||||||| |||| || ||||||||||||||||    
T  5029930 ggctttcgcaccagtttccgacccatcaaagatgggcgactaatccaactcatgcgtagaggcatgcgcac 5029860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 21898761 - 21898691
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| |||||||||| |||| ||| ||||||||||| ||| || ||||||||||||||||    
T  21898761 ggctttcgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcac 21898691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 29444762 - 29444832
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||| || ||||||||||||||||||  | ||||||||| ||| || ||||||||||||||||    
T  29444762 ggctttcgcactagtttccgacccaccaaagatggacaactaatccggctcatgcgtagaggcatgcgcac 29444832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 5253221 - 5253290
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||||||||| || |||| ||||||| ||| || ||||||||||||||||    
T  5253221 gctttcgcaccggtttccgacccaccaaaggtgggcgattaatccggctcatgcgtagaggcatgcgcac 5253290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 14326094 - 14326045
Alignment:
Q  176 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatg 225  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  14326094 tccgacccaccaaagatgagcgactaatccggctcatgcgtagaggcatg 14326045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 14419104 - 14419055
Alignment:
Q  176 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatg 225  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  14419104 tccgacccaccaaagatgagcgactaatccggctcatgcgtagaggcatg 14419055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 30410557 - 30410488
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||  ||| ||||||||||||||||||||||| ||||||  ||| || ||||||||||||||||    
T  30410557 gctttcgcatcggtttccgacccaccaaagatgagcgattaatccagctcatgcgtagaggcatgcgcac 30410488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 12606543 - 12606473
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| |||  | |||||||| || |||||||||||| |||||| ||||||||||||||||    
T  12606543 ggctttcgcaccggtttccagctcaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcac 12606473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 12635927 - 12635857
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| |||||||||||||   || |||||||||||| || ||| ||||||||||||||||    
T  12635927 ggctttcgcaccggtttccgacccaccaatagtgggcgactaatccggcttgtgcgtagaggcatgcgcac 12635857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 19089611 - 19089545
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    ||||||||||| ||| ||||||||||||||| |   ||||||||||| |||||| ||||||||||||    
T  19089611 ggctttcgcaccggtttccgacccaccaaaggtagacgactaatccggctcgtgcgtagaggcatgc 19089545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 11142713 - 11142646
Alignment:
Q  163 tttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||| ||| ||||||||||||||| ||  | ||||||| ||||| || ||||||||||||||||    
T  11142713 tttcgcaccggtctccgacccaccaaagttggacaactaatctgactcatgcgtagaggcatgcgcac 11142646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 33940098 - 33940055
Alignment:
Q  186 caaagatgagcgactaatccgactcgtgtgtagaggcatgcgca 229  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||    
T  33940098 caaagatggacgactaatccggctcgtgtgtagaggcatgcgca 33940055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 8932774 - 8932704
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||||||| ||||| || | || ||||||| ||| || ||||||||||||||||    
T  8932774 ggctttcgcaccggtttccgacccatcaaaggtgggtgattaatccggctcatgcgtagaggcatgcgcac 8932704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 8944240 - 8944170
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||||||| ||||| || | || ||||||| ||| || ||||||||||||||||    
T  8944240 ggctttcgcaccggtttccgacccatcaaaggtgggtgattaatccggctcatgcgtagaggcatgcgcac 8944170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 13469046 - 13468976
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||| ||||||||| | || |||||||||| | |||||| ||||||||||| ||||    
T  13469046 ggctttcgcaccggtttccaacccaccaatggtgggcgactaatctggctcgtgcgtagaggcatgtgcac 13468976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 14107355 - 14107425
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| |||||||||| ||  ||| |||||||||||| ||| || ||||||||||| ||||    
T  14107355 ggctttcgcaccggtttccgacccactaataatgggcgactaatccggctcatgcgtagaggcatgtgcac 14107425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 14783417 - 14783483
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    ||||||||||| ||| ||||||||||||| | ||  ||||||||||| ||| || ||||||||||||    
T  14783417 ggctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgc 14783483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 19230576 - 19230622
Alignment:
Q  180 acccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    ||||||||| ||||| ||||||||||| |||||| ||||||||||||    
T  19230576 acccaccaatgatgaacgactaatccggctcgtgcgtagaggcatgc 19230622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 3030656 - 3030693
Alignment:
Q  176 tccgacccaccaaagatgagcgactaatccgactcgtg 213  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  3030656 tccgacccaccaaatgtgagcgactaatccgactcgtg 3030693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 6606094 - 6606159
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatg 225  Q
    ||||||||||| ||| ||||||||||||| | ||  ||||||||||| ||| || |||||||||||    
T  6606094 ggctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatg 6606159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 10311467 - 10311536
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||  || | ||||||||||| | |||||||||||||  ||||||| |||||| |||||||||    
T  10311467 gctttcgcaccagttttcgacccaccaatggtgagcgactaatctaactcgtgcgtagagacatgcgcac 10311536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 12455419 - 12455349
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||||||||||| | ||||||||||||||| |||||| ||||||||||||||||    
T  12455419 ggctttcgcaccggtttccgacccaccaatggtgagcgactaatccggctcgtgcgtagaggcatgcgcac 12455349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 10823169 - 10823099
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| |||||||||| |||| || |||||||||||| |||||| ||||||||||||||||    
T  10823169 ggctttcgcaccggtttccgacccacaaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcac 10823099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 25540402 - 25540471
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||||||||| ||  ||||||||||| |||||| ||||||||||||||||    
T  25540402 gctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcac 25540471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 41031904 - 41031969
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    |||||||||||||| ||||||||||||||| || | |||||||||| |||||| ||||||||||||    
T  41031904 gctttcgcactggtttccgacccaccaaaggtgggtgactaatccggctcgtgcgtagaggcatgc 41031969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 45263682 - 45263734
Alignment:
Q  178 cgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  45263682 cgacccaccaaagatgagcgattaatccggctcgtgcgtagaggcatgcgcac 45263734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 8410240 - 8410170
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| |||||||| |||||  || |||||||||||| |||||| ||||||||||||||||    
T  8410240 ggctttcgcaccggtttccgaccccccaaaagtgggcgactaatccggctcgtgcgtagaggcatgcgcac 8410170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 34346284 - 34346350
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    ||||||||||| ||| ||||||||||||||| ||||||| ||||| ||||| || ||||||||||||    
T  34346284 ggctttcgcaccggtttccgacccaccaaaggtgagcgattaatctgactcatgcgtagaggcatgc 34346350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 38005511 - 38005441
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||  || ||||| ||||||||| || |||||||||||| ||| |||||||||||||||||||    
T  38005511 ggctttcgcaccagtttccgatccaccaaaggtgggcgactaatccggctcatgtgtagaggcatgcgcac 38005441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 44945702 - 44945632
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||| |||| |||| || |||||||||||| |||||| ||||||||||||||||    
T  44945702 ggctttcgcaccggtttccgatccactaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcac 44945632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 28616377 - 28616446
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| || ||||||| ||||||| |||||||||| | |||||| ||||||||||||||||    
T  28616377 gctttcgcaccggtttctgacccactaaagatgggcgactaatctggctcgtgcgtagaggcatgcgcac 28616446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 18649025 - 18649093
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||  ||| ||| ||||||||||  ||||||||||||||||||| || ||||||||||||||||    
T  18649025 ctttcgcaacggtttccaacccaccaaaagtgagcgactaatccgactcatgcgtagaggcatgcgcac 18649093  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 10669694 - 10669631
Alignment:
Q  167 gcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||| ||| ||||||||||||||| ||| ||| |||||||||||||| |||||| |||||||||    
T  10669694 gcaccggtttccgacccaccaaaggtgaacgattaatccgactcgtgcgtagagacatgcgcac 10669631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 2528338 - 2528404
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    |||||||||||  || |||||| ||| |||||||||||||||||||| ||  |||||||||||||||    
T  2528338 ggctttcgcaccagtttccgactcactaaagatgagcgactaatccggcttatgtgtagaggcatgc 2528404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 7747383 - 7747317
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    ||||||||||| ||| |||||||||| |||| ||| ||||||||||| ||| || ||||||||||||    
T  7747383 ggctttcgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgc 7747317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 22593242 - 22593173
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||||||||||||| ||  ||||||||||| ||| || ||||||||||||||||    
T  22593242 ggctttcgcaccggt-tccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcac 22593173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 41220744 - 41220674
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| |||||||||| |||| ||| |||||||| || ||| || ||||||||||||||||    
T  41220744 ggctttcgcaccggtttccgacccactaaaggtgaacgactaattcggctcatgcgtagaggcatgcgcac 41220674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 7787143 - 7787098
Alignment:
Q  182 ccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcg 227  Q
    |||||||||||| |||||||||||| |||||| |||||||||||||    
T  7787143 ccaccaaagatgggcgactaatccggctcgtgcgtagaggcatgcg 7787098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 10026614 - 10026683
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||| |||| || ||||||||||||||| ||  ||||||||||| ||| || ||||||||||||||||    
T  10026614 gctttcacactagtttccgacccaccaaaggtggtcgactaatccggctcatgcgtagaggcatgcgcac 10026683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 18902528 - 18902597
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||||||||| || |||||||||| | |||||| |||||| || ||||||    
T  18902528 gctttcgcaccggtttccgacccaccaaaggtgggcgactaatctggctcgtgcgtagagacacgcgcac 18902597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 39806919 - 39806952
Alignment:
Q  197 gactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||||||||||||||||||||||||||    
T  39806919 gactaatccgactcgtgtgtagaggcatgcgcac 39806952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 44139592 - 44139523
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||||||  | || |||||||||||| |||||| ||||||||| ||||||    
T  44139592 gctttcgcaccggtttccgacccaccattggtgggcgactaatccggctcgtgcgtagaggcacgcgcac 44139523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 9360747 - 9360815
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| ||| |||| ||||| |||| || ||||||||| || |||||| ||||||||||||||||    
T  9360747 ctttcgcaccggtttccggcccactaaaggtgggcgactaattcggctcgtgcgtagaggcatgcgcac 9360815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 21286551 - 21286483
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||| |||| ||| ||| ||||||||| |||||| |||||||||  |||||| ||||||||||||||||    
T  21286551 cttttgcaccggtttccaacccaccaatgatgagtgactaatccagctcgtgcgtagaggcatgcgcac 21286483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 10046477 - 10046544
Alignment:
Q  163 tttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||| |||| || ||||||||||||||| ||  ||||||||||| ||| || ||||||||||||||||    
T  10046477 tttcacactagtttccgacccaccaaaggtggtcgactaatccggctcatgcgtagaggcatgcgcac 10046544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 331610 - 331540
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||  |||||| ||| ||||||||||| || |||||||||||| ||| || ||||| ||||||||||    
T  331610 ggctttcatactggtttccaacccaccaaaggtgggcgactaatccggctcatgcgtagaagcatgcgcac 331540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 3848929 - 3848979
Alignment:
Q  178 cgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgc 228  Q
    ||||||| ||||| ||| |||||||||||||||||| |||||| |||||||    
T  3848929 cgacccatcaaaggtgaacgactaatccgactcgtgcgtagagacatgcgc 3848979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 15234058 - 15234128
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||  ||| ||||||| | ||||||||| |||||||||  ||| ||| ||||||||||||||||    
T  15234058 ggctttcgcatcggtttccgacctatcaaagatgaacgactaatctaacttgtgcgtagaggcatgcgcac 15234128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 20533200 - 20533158
Alignment:
Q  187 aaagatgagcgactaatccgactcgtgtgtagaggcatgcgca 229  Q
    |||||||||||| |||||||||||||  |||||||||||||||    
T  20533200 aaagatgagcgattaatccgactcgtacgtagaggcatgcgca 20533158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 39201521 - 39201571
Alignment:
Q  176 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    ||||||||||||||| ||| ||||||||||| ||| || ||||||||||||    
T  39201521 tccgacccaccaaaggtgaacgactaatccggctcatgcgtagaggcatgc 39201571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 3811688 - 3811757
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgca 229  Q
    ||||||||||  ||| || |||||||||||| || |||| ||||||| ||| || |||||||||||||||    
T  3811688 ggctttcgcatcggtttctgacccaccaaaggtgggcgagtaatccggctcatgcgtagaggcatgcgca 3811757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 16813164 - 16813229
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcg 227  Q
    ||||||||||| | ||| ||| ||||||||||  ||||||||||| ||||||  ||||||||||||    
T  16813164 ctttcgcactgatttccaacctaccaaagatggacgactaatccggctcgtgcatagaggcatgcg 16813229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 16852443 - 16852508
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcg 227  Q
    ||||||||||| | ||| ||| ||||||||||  ||||||||||| ||||||  ||||||||||||    
T  16852443 ctttcgcactgatttccaacctaccaaagatggacgactaatccggctcgtgcatagaggcatgcg 16852508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 20116609 - 20116678
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgca 229  Q
    ||||||||||| ||| ||||||||| ||||| ||  || |||||||| ||| || |||||||||||||||    
T  20116609 ggctttcgcaccggtttccgacccatcaaaggtggacggctaatccggctcatgcgtagaggcatgcgca 20116678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 6966 - 6897
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||||| ||| || ||||||||||||||||    
T  6966 gctttcgcaccggtttccgacccaccaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcac 6897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 43033013 - 43032944
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| || |||||||||||| || |||||||||||| |||||||||||||||||||||||    
T  43033013 gctttcgcaccggtttctgacccaccaaaggtgggcgactaatccggctcgtgtgtagaggcatgcgcac 43032944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 15884556 - 15884623
Alignment:
Q  163 tttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||| ||| ||||||||||||||| || |||||||||||| |||||| ||||||||||||||||    
T  15884556 tttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcac 15884623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 45521280 - 45521211
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||| ||||| ||||||||||||||| ||| || ||||||||||||||||    
T  45521280 gctttcgcaccggtttccgacccatcaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcac 45521211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 2964189 - 2964123
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    ||||||||||| ||| || |||||||||||| || ||||||||||||  ||||| ||||||||||||    
T  2964189 ggctttcgcaccggtttctgacccaccaaaggtgggcgactaatccggttcgtgcgtagaggcatgc 2964123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 8997542 - 8997608
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcg 227  Q
    |||||||||| ||| ||||||||||||||||||| ||||||||| | ||| || ||| |||||||||    
T  8997542 gctttcgcaccggtttccgacccaccaaagatgaacgactaatctggctcatgcgtataggcatgcg 8997608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 10927719 - 10927649
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||  ||| |||||||||| |||| ||| ||||||||||| ||| || ||||||||||||||||    
T  10927719 ggctttcgcatcggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcac 10927649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 17981553 - 17981488
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    |||||||||| ||| |||||| |||||||| || || |||||| ||||||||| ||||||||||||    
T  17981553 gctttcgcaccggtttccgactcaccaaagctgggcaactaattcgactcgtgcgtagaggcatgc 17981488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 34710565 - 34710634
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||| |||||| | ||||||||||| ||||  |||||| ||||||| ||||||| ||||||||||||    
T  34710565 gctttcggactggttttcgacccaccaatgatggacgactagtccgacttgtgtgtaaaggcatgcgcac 34710634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 39969913 - 39969982
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||  ||| ||||| ||| ||| |||| |||||||||| ||||| |||||||||||||||||||    
T  39969913 gctttcgcatcggtttccgatccatcaatgatgggcgactaatctgactcatgtgtagaggcatgcgcac 39969982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 43027417 - 43027349
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgca 229  Q
    |||||||||  ||| ||||||||| ||||||||  ||||||||||| ||| || |||||||||||||||    
T  43027417 gctttcgcatcggtttccgacccatcaaagatggacgactaatccggctcatgcgtagaggcatgcgca 43027349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 4479296 - 4479363
Alignment:
Q  163 tttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||| ||| ||||||||||||||| ||  ||||||||||  ||| || ||||||||||||||||    
T  4479296 tttcgcaccggtttccgacccaccaaaggtggacgactaatccagctcatgcgtagaggcatgcgcac 4479363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 22212512 - 22212579
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcg 227  Q
    ||||||||||| ||| | ||| ||||||||| ||||||||||||||| | |||| ||||| |||||||    
T  22212512 ggctttcgcaccggttttcgaaccaccaaaggtgagcgactaatccggcccgtgcgtagaagcatgcg 22212579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 583925 - 583855
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||  | ||| ||||| || |||||||||||||||| || ||||||||||||||||    
T  583925 ggctttcgcaccggtttctaatccatcaaaggtgggcgactaatccgactcatgcgtagaggcatgcgcac 583855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 8803167 - 8803097
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||  ||| ||||||||||||  |||| |||||||||||| |||||| |||||||  |||||||    
T  8803167 ggctttcgcatcggtttccgacccaccattgatgggcgactaatccggctcgtgcgtagaggtctgcgcac 8803097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 11298264 - 11298334
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||||||||||||| ||||||| ||||  | ||| ||  |||||||||||||||    
T  11298264 ggctttcgcaccggtttccgacccaccaaaggtgagcgattaatttggctcatgcatagaggcatgcgcac 11298334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 12754122 - 12754068
Alignment:
Q  176 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||| ||| ||||||||||||||||||| |||| |||  |||||||||||||||    
T  12754122 tccgatccatcaaagatgagcgactaatctgacttgtgcatagaggcatgcgcac 12754068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 14846688 - 14846618
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| | | ||||||||||||||| ||  ||||| ||| ||||| || ||||||||||||||||    
T  14846688 ggctttcgcaccgatttccgacccaccaaaggtggacgacttatctgactcatgcgtagaggcatgcgcac 14846618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 13831035 - 13831080
Alignment:
Q  184 accaaagatgagcgactaatccgactcgtgtgtagaggcatgcgca 229  Q
    |||||||||| | |||||||||||||  ||||||||||||||||||    
T  13831035 accaaagatgggtgactaatccgacttatgtgtagaggcatgcgca 13831080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 47078571 - 47078502
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||||| ||||||||||||| | ||||||||||||||| |||||| ||||||||||| ||||    
T  47078571 gctttcgcactggtttccgacccaccaatggtgagcgactaatccggctcgtgcgtagaggcatgtgcac 47078502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 14124128 - 14124060
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| ||| ||| ||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  14124128 ctttcgcaccggtttccaacccaccaatggtgagcgactaatccggctcgtgtgtagaggcatgcgcac 14124060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 36262764 - 36262834
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| |||| || |||||||||||| || ||||||||||||||||||| ||||||||||| ||||    
T  36262764 ggctttcgcattggtttctgacccaccaaaggtgggcgactaatccgactcgtgcgtagaggcatgtgcac 36262834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 38166140 - 38166071
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||||||||| || |||||||||||| |||||| |||||| |||||||||    
T  38166140 gctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagagccatgcgcac 38166071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 7246645 - 7246713
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| ||| ||||||||||||||| || |||||||||||| ||| || ||||||||||||||||    
T  7246645 ctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcac 7246713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 14567351 - 14567283
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| | | |||||||||||||||  |||||||||||||| |||||| ||||||||||||||||    
T  14567351 ctttcgcaccgatttccgacccaccaaaggcgagcgactaatccggctcgtgcgtagaggcatgcgcac 14567283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 1940774 - 1940844
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||| |||||| ||| | ||||||||||||| || |||||||||||| |||||| ||||||||||||||||    
T  1940774 ggctatcgcaccggttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcac 1940844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 3159467 - 3159536
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||| |||| ||| ||||||||||||| | ||||||||||||| | |||||| ||||||||||||||||    
T  3159467 gcttttgcaccggtttccgacccaccaatggtgagcgactaatctggctcgtgcgtagaggcatgcgcac 3159536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 5472846 - 5472915
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||  || | ||||||||||||| || |||||||||||| |||||| ||||||||||||||||    
T  5472846 gctttcgcaccagttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcac 5472915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 16645231 - 16645166
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    |||||||||| ||| |||||||||||| || || |||||||||| ||||| |||||||||||||||    
T  16645231 gctttcgcaccggtttccgacccaccacaggtgggcgactaatcagactcatgtgtagaggcatgc 16645166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 48834698 - 48834767
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||||||||| |  |||||||||||||||| ||| |||||||||| ||||    
T  48834698 gctttcgcaccggtttccgacccaccaaaggtaggcgactaatccgactcatgtatagaggcatgtgcac 48834767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 55921147 - 55921078
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||||||||| ||||||| ||||||| ||| |  ||||||||||||||||    
T  55921147 gctttcgcaccggtttccgacccaccaaaggtgagcgattaatccggctcatacgtagaggcatgcgcac 55921078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 3574466 - 3574513
Alignment:
Q  183 caccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||| ||| |||||||||||||||||||||| ||||||||||||||||    
T  3574466 cacctaaggtgagcgactaatccgactcgtgcgtagaggcatgcgcac 3574513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 40780861 - 40780928
Alignment:
Q  163 tttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||| ||| ||||||||||||||| ||  ||||||||||| ||| || ||||||||||||||||    
T  40780861 tttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcac 40780928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 21192754 - 21192684
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| | |||| |||||||  || |||| |||||||||||||| ||||||||||||||||    
T  21192754 ggctttcgcaccggttttcgactcaccaaatgtgggcgattaatccgactcgtgcgtagaggcatgcgcac 21192684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 21429411 - 21429345
Alignment:
Q  164 ttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||| ||| ||||||||||||||| ||  |||||| || |||||||| ||||||||||||||||    
T  21429411 ttcgcaccggtttccgacccaccaaaggtggacgactagtctgactcgtgcgtagaggcatgcgcac 21429345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 49260678 - 49260732
Alignment:
Q  176 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||||||| ||  ||||||||||| |||||| ||||||||||||||||    
T  49260678 tccgacccaccaaaggtggtcgactaatccggctcgtgcgtagaggcatgcgcac 49260732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 15732446 - 15732515
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||| |||||||||||||||||||||||   | |||| ||||||||||| ||||    
T  15732446 gctttcgcaccggtttccgatccaccaaagatgagcgactaatctagcccgtgcgtagaggcatgtgcac 15732515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 47682380 - 47682449
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||||||||||||| || |||||||| ||| |||||| |||||| |||| ||||    
T  47682380 gctttcgcaccggtttccgacccaccaaaggtgggcgactaacccggctcgtgcgtagagacatgtgcac 47682449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 2559419 - 2559351
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| ||| ||||||||||||||| ||  ||| ||||||| || ||| ||||||||||||||||    
T  2559419 ctttcgcaccggtttccgacccaccaaaggtggacgagtaatccggcttgtgcgtagaggcatgcgcac 2559351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 3507378 - 3507314
Alignment:
Q  166 cgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||| || ||||| ||||||||| ||  ||||||||||| |||||||||||||||| ||||||    
T  3507378 cgcactagtttccgatccaccaaaggtggacgactaatccggctcgtgtgtagaggcacgcgcac 3507314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 15839934 - 15840002
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||||| ||| ||| | |||||| | |||||||||||| ||| || ||||||||||||||||    
T  15839934 ctttcgcactggtttccaacctatcaaagaagggcgactaatccggctcatgcgtagaggcatgcgcac 15840002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 42722576 - 42722644
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| ||| | |||||||| |||| ||| ||||||||||| ||| || ||||||||||||||||    
T  42722576 ctttcgcaccggttttcgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcac 42722644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 48352509 - 48352576
Alignment:
Q  163 tttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||||| |||||| || ||||||||  ||||||||||| ||||||||  |||||||| ||||    
T  48352509 tttcgcactggtctccgactcatcaaagatggacgactaatccggctcgtgtgaggaggcatgtgcac 48352576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 54946347 - 54946296
Alignment:
Q  176 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcg 227  Q
    ||||||||||||| |||| |||||||||||| ||| || |||||||||||||    
T  54946347 tccgacccaccaatgatgggcgactaatccggctcatgcgtagaggcatgcg 54946296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 36145212 - 36145282
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| |||||  || ||||| ||  ||||||||||| ||| |||||||||||||||||||    
T  36145212 ggctttcgcaccggtttccgattcatcaaaggtggacgactaatccggctcatgtgtagaggcatgcgcac 36145282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 53354630 - 53354576
Alignment:
Q  176 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| ||||||||| |||||||||||| |  || ||||||||||||||||    
T  53354630 tccgacccatcaaagatgaacgactaatccgatttatgcgtagaggcatgcgcac 53354576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 53599174 - 53599104
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||||| |||| |||| ||| ||| ||||||| ||| || ||||||||||||||||    
T  53599174 ggctttcgcaccggtttccgatccactaaaggtgaacgattaatccggctcatgcgtagaggcatgcgcac 53599104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 17080156 - 17080087
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| | ||| ||| ||||| || |||||||||||| ||| || ||||||||||||||||    
T  17080156 gctttcgcaccggttttcgatccatcaaaggtgtgcgactaatccggctcatgcgtagaggcatgcgcac 17080087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 23788494 - 23788441
Alignment:
Q  177 ccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||| |||| |||| ||||||||||  |||||| ||||||||||||||||    
T  23788494 ccgacccatcaaaaatgaacgactaatccagctcgtgcgtagaggcatgcgcac 23788441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 24166563 - 24166494
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| ||||| ||| ||||| || | |||||||| | |||||| ||||||||||||||||    
T  24166563 gctttcgcaccggtttccgatccatcaaaggtgggtgactaatctggctcgtgcgtagaggcatgcgcac 24166494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 38168370 - 38168305
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatg 225  Q
    ||||||||||| ||| ||| |||||| |||| ||| ||||||||||| ||| || |||||||||||    
T  38168370 ggctttcgcaccggtttccaacccactaaaggtgaacgactaatccggctcatgcgtagaggcatg 38168305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 42831 - 42899
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| ||| ||||||||||||||| || |||||||||||| ||| |||||||||||||||||||    
T  42831 ctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgtgtagaggcatgcgcac 42899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 155708 - 155778
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||  ||||||||||||||| || |||||||||||| |||||| ||||||||||||||||    
T  155708 ggctttcgcaccggcttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcac 155778  T

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Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 250024 - 250092
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| | | |||||||||||||||  |||||||||||||| |||||| ||||||||||||||||    
T  250024 ctttcgcaccgatttccgacccaccaaaggcgagcgactaatccggctcgtgcgtagaggcatgcgcac 250092  T

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Target: scaffold0029 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 41156 - 41090
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    |||||||| || ||| |||||| ||||||||||| |||||||||||| |||||| ||||||||||||    
T  41156 ggctttcgaaccggtttccgactcaccaaagatgggcgactaatccggctcgtgcgtagaggcatgc 41090  T

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Target: scaffold0006 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 68626 - 68556
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||| |||||| ||| | ||||||||||||| || |||||||||||| |||||| ||||||||||||||||    
T  68626 ggctatcgcaccggttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcac 68556  T

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Target: scaffold0011 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 224427 - 224359
Alignment:
Q  162 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| ||| ||||||||||||||||||  ||||||||||| |||||| ||||||| ||| ||||    
T  224427 ctttcgcaccggtttccgacccaccaaagatggacgactaatccggctcgtgcgtagaggtatgtgcac 224359  T

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Target: scaffold0011; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 186626 - 186559
Alignment:
Q  163 tttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||| ||| ||| |||||||||| |||||||| ||||||||||| |||||| ||||||||||| ||||    
T  186626 tttcacaccggtttccgacccactaaagatgaacgactaatccggctcgtgcgtagaggcatgtgcac 186559  T

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Target: scaffold0170 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 9949 - 9887
Alignment:
Q  168 cactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||| || |||||||||||| ||  ||||||||||| |||||| ||||||||||||||||    
T  9949 cactggtttctgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcac 9887  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 681 - 616
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgc 226  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||| | ||| |  ||||||||||||    
T  681 gctttcgcaccggtttccgacccaccaaaggtgagcgactaatctggctcatacgtagaggcatgc 616  T

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Target: scaffold0209 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 12685 - 12615
Alignment:
Q  160 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||||| ||| ||  | ||| ||||| || |||||||||||||||| || ||||||||||||||||    
T  12685 ggctttcgcaccggtttctaatccatcaaaggtgggcgactaatccgactcatgcgtagaggcatgcgcac 12615  T

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Target: scaffold0116 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 17486 - 17432
Alignment:
Q  176 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    ||||||||| ||| | || |||||||||||| |||||||||||| ||||||||||    
T  17486 tccgacccatcaatggtgggcgactaatccggctcgtgtgtagaagcatgcgcac 17432  T

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Target: scaffold0316 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 1612 - 1681
Alignment:
Q  161 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagaggcatgcgcac 230  Q
    |||||||||| ||| | ||||||||||||| || |||||||||  | ||| || ||||||||||||||||    
T  1612 gctttcgcaccggttttcgacccaccaaaggtgggcgactaatttggctcatgcgtagaggcatgcgcac 1681  T

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