View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5705_low_13 (Length: 214)
Name: NF5705_low_13
Description: NF5705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5705_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 41 - 206
Target Start/End: Original strand, 52183431 - 52183596
Alignment:
| Q |
41 |
gtagggggttcggtggtggcctgtaagagtgcgtgtgcagcgtttaaaaccgaggaattttgttgcaccggtgaacattcgagtccacagagttgcagtc |
140 |
Q |
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| T |
52183431 |
gtagggggttcggtggtggcctgtaagagtgcgtgtgcagcgtttaataccgaggaattttgttgtaccggtgaacattcgagtccacagagttgcagtt |
52183530 |
T |
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| Q |
141 |
caacacagtactcagagatgttcaagtctgcgtgtccctctgcgtacagttatgcttatgatgatg |
206 |
Q |
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| T |
52183531 |
caacacagtactcagagatgttcaagtctgcgtgtccctctgcgtacagttatgcttatgatgatg |
52183596 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 6679167 - 6679231
Alignment:
| Q |
47 |
ggttcggtggtggcctgtaagagtgcgtgtgcagcgtttaaaaccgaggaattttgttgcaccgg |
111 |
Q |
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|||||||||||||| |||||||| |||||| ||||| || | |||||||||||||||||||| |
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| T |
6679167 |
ggttcggtggtggcttgtaagagcgcgtgtttggcgttcaatatggaggaattttgttgcaccgg |
6679231 |
T |
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