View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5705_low_3 (Length: 429)
Name: NF5705_low_3
Description: NF5705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5705_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 181044 - 180650
Alignment:
| Q |
18 |
cttaacagatatgagattatgtttagcatttgggacacaaagcaccttatttaatttgaaagtaatattgggggtagggagggtaatagagccaacatgt |
117 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
181044 |
cttaacatatatgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagtaatatttggggtagggagggtaatagagccaacatgt |
180945 |
T |
|
| Q |
118 |
gaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttgatgttatacgatgac |
217 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
180944 |
gaaatattcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttgatgttatatgatgac |
180845 |
T |
|
| Q |
218 |
tggctccagtgtcaaacacccagttaggagcagccgaatgtgaagcagaagcgaaatttaccattggttgattgttgcggtgccgcagcggaggacatta |
317 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
180844 |
tggctctagtgtcgaacacccagttaggagcagccgaatgtgaagtagaagcgaaatttgccattggttgattgttgcgttgccgcagcggaggacatta |
180745 |
T |
|
| Q |
318 |
cttagcaatatggccaaggaaagagcagagttgacatcttggtggaggtctatttccacatgagttgaaacctcgacctctaccaagatagttag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
180744 |
cttagcaatatggccaaggaaagagcagagttgacatcttggtggaagtctatttccacatgagttgaaacctcgacctctaccacgatagttag |
180650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 1701471 - 1701077
Alignment:
| Q |
18 |
cttaacagatatgagattatgtttagcatttgggacacaaagcaccttatttaatttgaaagtaatattgggggtagggagggtaatagagccaacatgt |
117 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
1701471 |
cttaacatatatgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagtagtattgggggtagggagggtaatagagccaacatgt |
1701372 |
T |
|
| Q |
118 |
gaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttgatgttatacgatgac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
1701371 |
gaaattttcaaacctgtaccatcaccaatctgaacttcttctggaccgtcatattcggagtgcagctgcatattgttcagatttgatgttatatgatgac |
1701272 |
T |
|
| Q |
218 |
tggctccagtgtcaaacacccagttaggagcagccgaatgtgaagcagaagcgaaatttaccattggttgattgttgcggtgccgcagcggaggacatta |
317 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || ||||| ||||||| || |
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|
| T |
1701271 |
tggctcctgtgtcgaacacccagttaggagcagccgaatgtgaagcagaagcgaaatttgccactggttgattgttgcgttgtagcagctgaggacaata |
1701172 |
T |
|
| Q |
318 |
cttagcaatatggccaaggaaagagcagagttgacatcttggtggaggtctatttccacatgagttgaaacctcgacctctaccaagatagttag |
412 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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|
| T |
1701171 |
cttagcaatatggccaagcaaagagcagagttgacatcttggtggaggtctatttccacgtgagttgaaacctcgacctctaccacgatagttag |
1701077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 247
Target Start/End: Original strand, 26593053 - 26593191
Alignment:
| Q |
109 |
ccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttgatgtta |
208 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| || |||||||| || ||||||||||| ||||||| |||||||| |||||||||| | | |
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| T |
26593053 |
ccaacatgggaaattttcaaacctgtaccatcaccaatttgcacttcttctgggccatcatattcagagtgaatgtgcatattattcagatttgtgctga |
26593152 |
T |
|
| Q |
209 |
tacgatgactggctccagtgtcaaacacccagttaggag |
247 |
Q |
| |
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|| |||| ||||| ||||| ||||||||||| ||||||| |
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|
| T |
26593153 |
tatgatggctggccccagtatcaaacacccaattaggag |
26593191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 104 - 247
Target Start/End: Complemental strand, 5400124 - 5399981
Alignment:
| Q |
104 |
tagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttga |
203 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| || || | |||||||||||||| | |
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| T |
5400124 |
tagagccaacatgagaaatttttaaacctgtaccatcaccaatttgaacttcctcgggaccatcatattctgaatggatgtgcatattgttcaggctgtt |
5400025 |
T |
|
| Q |
204 |
tgttatacgatgactggctccagtgtcaaacacccagttaggag |
247 |
Q |
| |
|
| | | |||| || |||||||||||||||||||||||||||| |
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|
| T |
5400024 |
ggcaacatgatggctagctccagtgtcaaacacccagttaggag |
5399981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 104 - 247
Target Start/End: Complemental strand, 3541121 - 3540978
Alignment:
| Q |
104 |
tagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttga |
203 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||||||| || |||||||||||||| || || | |||||||||||||| | |
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| T |
3541121 |
tagagccaacatgagaaatttttaaacctgtaccatcaccaatttgaacttcctctggaccatcatattctgaatggatgtgcatattgttcaggctgtt |
3541022 |
T |
|
| Q |
204 |
tgttatacgatgactggctccagtgtcaaacacccagttaggag |
247 |
Q |
| |
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| | | |||| || |||||||||||||||||||||||||||| |
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|
| T |
3541021 |
ggcaacatgatggctagctccagtgtcaaacacccagttaggag |
3540978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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