View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5705_low_8 (Length: 393)
Name: NF5705_low_8
Description: NF5705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5705_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 11 - 376
Target Start/End: Original strand, 9254363 - 9254723
Alignment:
| Q |
11 |
cagagacgtagtcagtattggttgaactatgtgatgattgtattcttgaatgtttatttatctgcatactttggaaacaaattcttgaactatgaatatt |
110 |
Q |
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| T |
9254363 |
cagagacgtagtcactattagttgaactatgtgatgattgtattcttgaatgtttatttatctgcatactttggaaacaaattcttgaactatgaatatt |
9254462 |
T |
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| Q |
111 |
ataactcgtaatggaatgaatgtggagctttacattaatatttacataacaaaaataacgcctatgtttgaggtgtatttgcgactatgctttgcttcca |
210 |
Q |
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| T |
9254463 |
ataactcgtaatggaatgaatgtggaactttacattaatatttacataacaaaaataacgcctatgtttgaggtgtatttgcgactatgctttgcttcca |
9254562 |
T |
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| Q |
211 |
agagtcacacatgattacatgttattttgtaccttccttcttctgcggtgattgagaaactatatatctttattgacagaaaaactttatatcatcttga |
310 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9254563 |
agagt--cacatgattacatgttattttgtaccttccttcttctgcggtgattgagaaactatatatctttattgacagaaaaactttat---atcttga |
9254657 |
T |
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| Q |
311 |
tgattaaaaaattcaacaaagtttacctaagtcagatgaattacataatgtcgttttcctaacagt |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9254658 |
tgattaaaaaattcaacaaagtttacctaagtcagatgaattacataatgtcgttttcctaacagt |
9254723 |
T |
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