View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5706-Insertion-3 (Length: 930)

Name: NF5706-Insertion-3
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5706-Insertion-3
NF5706-Insertion-3
[»] chr7 (25 HSPs)
chr7 (301-693)||(15431970-15432361)
chr7 (306-693)||(15490325-15490712)
chr7 (689-930)||(15489636-15489878)
chr7 (689-930)||(15557677-15557919)
chr7 (689-852)||(15450827-15450990)
chr7 (755-930)||(15431241-15431418)
chr7 (695-881)||(16944265-16944452)
chr7 (695-851)||(15431419-15431575)
chr7 (173-293)||(15491233-15491353)
chr7 (748-850)||(15534703-15534805)
chr7 (8-73)||(15491361-15491428)
chr7 (90-203)||(15567974-15568086)
chr7 (869-930)||(15450701-15450763)
chr7 (643-693)||(16944977-16945027)
chr7 (754-850)||(15480846-15480942)
chr7 (748-850)||(15427852-15427954)
chr7 (748-850)||(15483762-15483864)
chr7 (8-53)||(15568155-15568200)
chr7 (388-473)||(6081448-6081534)
chr7 (748-818)||(15447384-15447454)
chr7 (12-54)||(15598242-15598284)
chr7 (598-639)||(15558510-15558551)
chr7 (248-293)||(15567929-15567974)
chr7 (318-387)||(6081564-6081637)
chr7 (513-636)||(15512004-15512126)
[»] scaffold1195 (2 HSPs)
scaffold1195 (388-547)||(1217-1377)
scaffold1195 (8-73)||(1862-1927)
[»] scaffold1694 (1 HSPs)
scaffold1694 (8-73)||(1100-1165)
[»] chr5 (4 HSPs)
chr5 (388-473)||(29527131-29527217)
chr5 (318-387)||(29527028-29527101)
chr5 (388-473)||(39702698-39702784)
chr5 (314-380)||(39702591-39702661)
[»] chr1 (4 HSPs)
chr1 (388-473)||(10582947-10583033)
chr1 (388-473)||(49122375-49122461)
chr1 (318-387)||(10583063-10583136)
chr1 (318-387)||(49122491-49122564)
[»] scaffold0227 (1 HSPs)
scaffold0227 (388-473)||(11323-11409)
[»] chr6 (1 HSPs)
chr6 (388-473)||(18132869-18132955)


Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 301 - 693
Target Start/End: Complemental strand, 15432361 - 15431970
Alignment:
Q  301 cgctgactagcatatgtagatggcatcaactccaccgctgccaccatatgcacggtttcgcaagaatttcaccgcctccaacaacttaatgtttctccac 400  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| |||||||||| ||||| |     
T  15432361 cgctaactagcatatgtagatggcatcaactccacagctgccaccgtatgcacgttttcgcaagaatttcaccgcctccagcaacttaatgattctcga- 15432263  T
Q  401 acaaatcaaccaccgataggcacacctctgccgtcaaactgtggcatgtccattttccccctactgtgaattttcctgtcaggcgcgaacgtgcagtgct 500  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  15432262 acaaatcaaccaccgataggcacacctctgccgccaaactggggcatgtccatcttccccctactgtgaattttcctgtcaggcgcgaacgtgcagtgtt 15432163  T
Q  501 gtgaaaagtggtttgataaaattctgctgtgcaagagtgctttagcaccactatagccgctatttcgtaatactttgtgctaaataaagcatcgcaaaaa 600  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15432162 gtgaaaagtggtttgataaaattctgctgtgcaagattgctttagcaccactatagccgctatttcgtaatactttgtgctaaataaagtatcgcaaaaa 15432063  T
Q  601 accaatgatttgtgtaaattctgcagtgcaatggtgacacgacgctacaactactatttattatttaacaatactcaggtatcatctgatttt 693  Q
    | ||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  15432062 aacaatgatttgtgtaaattctgcaatgcaatggtgacacgccgctgcaactactatttattatttaacaatattcaggtatcatctgatttt 15431970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 306 - 693
Target Start/End: Complemental strand, 15490712 - 15490325
Alignment:
Q  306 actagcatatgtagatggcatcaactccaccgctgccaccatatgcacggtttcgcaagaatttcaccgcctccaacaacttaatgtttctccacacaaa 405  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||  ||||||||||||||| |||||||    
T  15490712 actagcatatgtagatgacatcaactccaccgctgccaccatatgcacagtttcacaagaatttcaccgcctccagaaacttaatgtttctcgacacaaa 15490613  T
Q  406 tcaaccaccgataggcacacctctgccgtcaaactgtggcatgtccattttccccctactgtgaattttcctgtcaggcgcgaacgtgcagtgctgtgaa 505  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||    
T  15490612 tcaaccaccgataggcacacctctgccgttaaactgtggcatgtccattttccccctactgtgaatttttctgtcaggcgggaacgtgcagtgttgtgaa 15490513  T
Q  506 aagtggtttgataaaattctgctgtgcaagagtgctttagcaccactatagccgctatttcgtaatactttgtgctaaataaagcatcgcaaaaaaccaa 605  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  15490512 aagtggtttgataaaattctgccgtgcaagaatgctgtagcaccactatagccgctatttcgtaatactttgtgctaaataaagtatcgcaaaaaaacaa 15490413  T
Q  606 tgatttgtgtaaattctgcagtgcaatggtgacacgacgctacaactactatttattatttaacaatactcaggtatcatctgatttt 693  Q
    |||||||||||||||||| | ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  15490412 tgatttgtgtaaattctggaatgcaatggtgacacgccgctacagctactatttattatttaacaatactcaggtattatctgatttt 15490325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 689 - 930
Target Start/End: Complemental strand, 15489878 - 15489636
Alignment:
Q  689 attttacaatattgatttcaatactgaatgaactcatgcataatattcatattacaattagttaatacaatgttctcattctagtgcataattcatccat 788  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  15489878 attttacaatattgatttcaatattgaatgaactcatgcataatattcatataacaatcagttaatacaatgttctcattctagtgcataattcatccat 15489779  T
Q  789 tttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattcttattaaaattcctctctttgtgctctatctgcaatt 888  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||    
T  15489778 tttcattatttgaccttactaattgagagtttttctacaatctgtattttcttccgcaaattcttattaaatttcctcgctttgtgctctatcttcaatt 15489679  T
Q  889 tttcatgat-atgatgtttctatcgcactcccccattcagctt 930  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  15489678 tttcatgataatgatgtttctatcgcgctcccccattcagctt 15489636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 689 - 930
Target Start/End: Complemental strand, 15557919 - 15557677
Alignment:
Q  689 attttacaatattgatttcaatactgaatgaactcatgcataatattcatattacaattagttaatacaatgttctcattctagtgcataattcatccat 788  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  15557919 attttacaatattgatttcaatattgaatgaactcatgcataatattcatataacaatcagttaatacaatgttctcattctagtgcataattcatccat 15557820  T
Q  789 tttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattcttattaaaattcctctctttgtgctctatctgcaatt 888  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||    
T  15557819 tttcattatttgaccttactaattgagagtttttctacaatctgtattttcttccgcaaattcttattaaatttcctcgctttgtgctctatcttcaatt 15557720  T
Q  889 tttcatgat-atgatgtttctatcgcactcccccattcagctt 930  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  15557719 tttcatgataatgatgtttctatcgcgctcccccattcagctt 15557677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 689 - 852
Target Start/End: Complemental strand, 15450990 - 15450827
Alignment:
Q  689 attttacaatattgatttcaatactgaatgaactcatgcataatattcatattacaattagttaatacaatgttctcattctagtgcataattcatccat 788  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||    
T  15450990 attttacaatattgatttcaatactgaatgaactcatgcataatattcatataacaatcagttaatataatgttctcattccagtgcataattcatccat 15450891  T
Q  789 tttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattct 852  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15450890 tttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattct 15450827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 755 - 930
Target Start/End: Complemental strand, 15431418 - 15431241
Alignment:
Q  755 acaatgttctcattctagtgcataattcatccattttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattctta 854  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15431418 acaatgttctcattcttgtgcataattcatccattttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattctta 15431319  T
Q  855 ttaaaattcctctc-tttgtgctctatctgcaatttttcatgat-atgatgtttctatcgcactcccccattcagctt 930  Q
      ||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  15431318 agaaatttcctctcttttgtgctctatctgcaatttttcatgataatgatgtttctatcgcgctcccccattcagctt 15431241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 695 - 881
Target Start/End: Complemental strand, 16944452 - 16944265
Alignment:
Q  695 caatattgatttcaatactgaatgaactcatgcataatattcatattacaattagttaatacaatgttctcattctagtgcataattcatccattttcat 794  Q
    |||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||||||||||||    
T  16944452 caattttgatttcaatacttaatgaactcatgcataatattcatataacaatcagttagtacaatgttctcattctagtacacaattcatccattttcat 16944353  T
Q  795 tatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattcttattaaaattcctctc-tttgtgctctatc 881  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| | |||||||||||||    
T  16944352 tatttgaccttattaattgagagtttttctaaaatctgtattttcttctgcaaattcttattaaatttcctcgcttttgtgctctatc 16944265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 695 - 851
Target Start/End: Complemental strand, 15431575 - 15431419
Alignment:
Q  695 caatattgatttcaatactgaatgaactcatgcataatattcatattacaattagttaatacaatgttctcattctagtgcataattcatccattttcat 794  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||||||| |||||||||||||||||||||||    
T  15431575 caatatttattacaatactgaatgaactcatgcataatattcatataacaaaacgttaatacaatgttctcattcttgtgcataattcatccattttcat 15431476  T
Q  795 tatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattc 851  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15431475 tatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattc 15431419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 173 - 293
Target Start/End: Complemental strand, 15491353 - 15491233
Alignment:
Q  173 ggattctatatgttattgatttgtgttagctcttttgaacttttgtctatagaatcagaattggatttatctatatatggatcacctttctgaatcacca 272  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15491353 ggattctatatgtaattgatttgtgttagctcttttgaacttttgactatagaatcagaattggatttatctatatatggttcacctttctgaatcacca 15491254  T
Q  273 cctttgagtatgttgcaatta 293  Q
    |||||||||||||||||||||    
T  15491253 cctttgagtatgttgcaatta 15491233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 748 - 850
Target Start/End: Complemental strand, 15534805 - 15534703
Alignment:
Q  748 agttaatacaatgttctcattctagtgcataattcatccattttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaa 847  Q
    ||||| |||||||||||||||| |||||||||| | ||||||||||| ||| |||||| ||||||||||||||| ||| ||| ||| |||||||| ||||    
T  15534805 agttactacaatgttctcattcaagtgcataatccgtccattttcatcattcgaccttgttaattgagagttttcctaaaatttgtgttttcttctgcaa 15534706  T
Q  848 att 850  Q
    |||    
T  15534705 att 15534703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 15491428 - 15491361
Alignment:
Q  8 tgagctacataagaggtgacattatgttttctcctttca--agattattttgtggattcatcatcatc 73  Q
    |||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  15491428 tgagctgcataagaggtgacattatgttttctcctttcaagagattattttgtggattcatcatcatc 15491361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 15568086 - 15567974
Alignment:
Q  90 tgcttcttgttatggacacattgcaataaaaaattttgttggctggaagaacacaaatatgtttaatgtcttggagaaaattgggattctatatgttatt 189  Q
    |||||||||||||||||||||||| |||| |  |||| | ||||||||||||| || | |||||| ||||||||||||||||  ||| ||||||||||||    
T  15568086 tgcttcttgttatggacacattgcgataacattttttatcggctggaagaacataa-tctgtttattgtcttggagaaaattttgatactatatgttatt 15567988  T
Q  190 gatttgtgttagct 203  Q
     | |||||||||||    
T  15567987 tacttgtgttagct 15567974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 869 - 930
Target Start/End: Complemental strand, 15450763 - 15450701
Alignment:
Q  869 tttgtgctctatctgcaatttttcatgat-atgatgtttctatcgcactcccccattcagctt 930  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  15450763 tttgtgctctatctgcaatttttcatgataatgatgtttctatcgcgctcccctattcagctt 15450701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 643 - 693
Target Start/End: Complemental strand, 16945027 - 16944977
Alignment:
Q  643 cgctacaactactatttattatttaacaatactcaggtatcatctgatttt 693  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16945027 cgctacaactagtatttattatttaacaatactcaggtatcatctgatttt 16944977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 754 - 850
Target Start/End: Original strand, 15480846 - 15480942
Alignment:
Q  754 tacaatgttctcattctagtgcataattcatccattttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaatt 850  Q
    |||||||||||||||  |||||||||| ||||||||||||| ||| |||||  ||||||||||||||| ||| | | |||||||||||  |||||||    
T  15480846 tacaatgttctcatttaagtgcataatccatccattttcatcattcgacctcgttaattgagagttttcctaaattttgtattttcttttgcaaatt 15480942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 748 - 850
Target Start/End: Complemental strand, 15427954 - 15427852
Alignment:
Q  748 agttaatacaatgttctcattctagtgcataattcatccattttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaa 847  Q
    ||||| |||||||||||||||| |||||||||| | ||||||||||| ||| |||||  ||||||||||||||| ||| ||| | | |||||||  ||||    
T  15427954 agttactacaatgttctcattcaagtgcataatccgtccattttcatcattggacctcgttaattgagagttttcctaaaatttctgttttcttatgcaa 15427855  T
Q  848 att 850  Q
    |||    
T  15427854 att 15427852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 748 - 850
Target Start/End: Complemental strand, 15483864 - 15483762
Alignment:
Q  748 agttaatacaatgttctcattctagtgcataattcatccattttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaa 847  Q
    ||||| ||||||||| |||||| |||||||||| | ||||||||||| |||||||||  ||||||||||||||| ||| ||| | | |||||||  ||||    
T  15483864 agttactacaatgttttcattcaagtgcataatccgtccattttcatcatttgacctcgttaattgagagttttcctaaaatttctgttttcttatgcaa 15483765  T
Q  848 att 850  Q
    |||    
T  15483764 att 15483762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 15568200 - 15568155
Alignment:
Q  8 tgagctacataagaggtgacattatgttttctcctttcaagattat 53  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  15568200 tgagctacatgagaggtgacattatgttttctcctttcaagattat 15568155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 388 - 473
Target Start/End: Complemental strand, 6081534 - 6081448
Alignment:
Q  388 aatgtttctccacacaaatcaaccaccgataggca-cacctctgccgtcaaactgtggcatgtccattttccccctactgtgaattt 473  Q
    |||||||||| | |||||||||||||| ||| ||  |||  ||||| ||||| |||||||||||||||||||| |||||||||||||    
T  6081534 aatgtttctcaatacaaatcaaccaccaataagcgtcactgctgccatcaaattgtggcatgtccattttccctctactgtgaattt 6081448  T

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Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 748 - 818
Target Start/End: Complemental strand, 15447454 - 15447384
Alignment:
Q  748 agttaatacaatgttctcattctagtgcataattcatccattttcattatttgaccttattaattgagagt 818  Q
    ||||| |||||||||||||||| |||||||||| | ||||||||||| ||| |||||  ||||||||||||    
T  15447454 agttactacaatgttctcattcaagtgcataatccgtccattttcatcattcgacctcgttaattgagagt 15447384  T

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Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 15598284 - 15598242
Alignment:
Q  12 ctacataagaggtgacattatgttttctcctttcaagattatt 54  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  15598284 ctacatgagaggtgacattgtgttttctcctttcaagattatt 15598242  T

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Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 598 - 639
Target Start/End: Complemental strand, 15558551 - 15558510
Alignment:
Q  598 aaaaccaatgatttgtgtaaattctgcagtgcaatggtgaca 639  Q
    |||| ||||||||||||||||||||||| |||||||||||||    
T  15558551 aaaatcaatgatttgtgtaaattctgcaatgcaatggtgaca 15558510  T

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Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 15567974 - 15567929
Alignment:
Q  248 tatggatcacctttctgaatcaccacctttgagtatgttgcaatta 293  Q
    |||||| ||||||||| ||||| |||||||||||||||||||||||    
T  15567974 tatggaccacctttctcaatcatcacctttgagtatgttgcaatta 15567929  T

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Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 6081637 - 6081564
Alignment:
Q  318 agatggcatcaactccaccgctgccaccata----tgcacggtttcgcaagaatttcaccgcctccaacaactt 387  Q
    |||||||||| |||||||| |||||||||||     |||||||||||||||  |||||||||||||| ||||||    
T  6081637 agatggcatcgactccaccactgccaccatacgagagcacggtttcgcaaggctttcaccgcctccagcaactt 6081564  T

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Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 636
Target Start/End: Complemental strand, 15512126 - 15512004
Alignment:
Q  513 ttgataaaattctgctgtgcaagagtgctttagcaccactatagccgctatttcgtaatactttgtgctaaataaagcatcgcaaaaaaccaatgatttg 612  Q
    |||||||||||||||| | ||| |||||| |||||||   || ||||  ||| | ||| | ||||| |||||||||| |||||| || | | ||||||||    
T  15512126 ttgataaaattctgctctccaatagtgctatagcaccgtaattgccgtcatt-cataaaattttgtactaaataaagtatcgcagaacaacgatgatttg 15512028  T
Q  613 tgtaaattctgcagtgcaatggtg 636  Q
    | ||||||||||| ||||||||||    
T  15512027 tttaaattctgcaatgcaatggtg 15512004  T

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Target: scaffold1195 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: scaffold1195
Description:

Target: scaffold1195; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 388 - 547
Target Start/End: Complemental strand, 1377 - 1217
Alignment:
Q  388 aatgtttctccacacaaatcaaccaccgataggca-cacctctgccgtcaaactgtggcatgtccattttccccctactgtgaattttcctgtcaggcgc 486  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||| |||||||||||| |  || |||||    
T  1377 aatgcttctccacacaaatcaaccaccgataggcatcaccgctgccgtcaaactgtggcatgtctattttcccccaactgtgaatttttcgttctggcgc 1278  T
Q  487 gaacgtgcagtgctgtgaaaagtggtttgataaaattctgctgtgcaagagtgctttagca 547  Q
    ||||||| | || ||| |||| ||||||||||||||||| || |||||||||||| |||||    
T  1277 gaacgtgaaatgttgtcaaaaatggtttgataaaattcttctatgcaagagtgctatagca 1217  T

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Target: scaffold1195; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 1927 - 1862
Alignment:
Q  8 tgagctacataagaggtgacattatgttttctcctttcaagattattttgtggattcatcatcatc 73  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1927 tgagctagataagaggttacattatgttttctcctttcaagattattttgtggattcatcatcatc 1862  T

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Target: scaffold1694 (Bit Score: 58; Significance: 7e-24; HSPs: 1)
Name: scaffold1694
Description:

Target: scaffold1694; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 1100 - 1165
Alignment:
Q  8 tgagctacataagaggtgacattatgttttctcctttcaagattattttgtggattcatcatcatc 73  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1100 tgagctagataagaggttacattatgttttctcctttcaagattattttgtggattcatcatcatc 1165  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 388 - 473
Target Start/End: Original strand, 29527131 - 29527217
Alignment:
Q  388 aatgtttctccacacaaatcaaccaccgataggca-cacctctgccgtcaaactgtggcatgtccattttccccctactgtgaattt 473  Q
    |||||||||| | |||||||||||||| ||| ||  |||  ||||| ||||| |||||||||||||||||||| |||||||||||||    
T  29527131 aatgtttctcaatacaaatcaaccaccaataagcgtcactgctgccatcaaattgtggcatgtccattttccctctactgtgaattt 29527217  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 387
Target Start/End: Original strand, 29527028 - 29527101
Alignment:
Q  318 agatggcatcaactccaccgctgccaccata----tgcacggtttcgcaagaatttcaccgcctccaacaactt 387  Q
    ||||||||||||||||||| |||||||||||     |||||||||||||||  |||||||||||||| ||||||    
T  29527028 agatggcatcaactccaccactgccaccatacgagagcacggtttcgcaaggctttcaccgcctccagcaactt 29527101  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 388 - 473
Target Start/End: Original strand, 39702698 - 39702784
Alignment:
Q  388 aatgtttctccacacaaatcaaccaccgataggca-cacctctgccgtcaaactgtggcatgtccattttccccctactgtgaattt 473  Q
    |||||||||| | |||||||||||||| ||||||| |||  |||||||||||   ||||||||||||| |||| ||| || ||||||    
T  39702698 aatgtttctcaatacaaatcaaccaccaataggcatcactgctgccgtcaaatgttggcatgtccattatccctctattgagaattt 39702784  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 39702591 - 39702661
Alignment:
Q  314 atgtagatggcatcaactccaccgctgccaccatat----gcacggtttcgcaagaatttcaccgcctcca 380  Q
    |||||||||||||| |||||||| || |||||||||    |||||||||| ||| | ||||||||||||||    
T  39702591 atgtagatggcatcgactccaccacttccaccatatgagagcacggtttcacaatactttcaccgcctcca 39702661  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 388 - 473
Target Start/End: Complemental strand, 10583033 - 10582947
Alignment:
Q  388 aatgtttctccacacaaatcaaccaccgataggca-cacctctgccgtcaaactgtggcatgtccattttccccctactgtgaattt 473  Q
    |||||||||| | |||||||||||||| ||| ||  |||  ||||| ||||| |||||||||||||||||||| |||||||||||||    
T  10583033 aatgtttctcaatacaaatcaaccaccaataagcgtcactgctgccatcaaattgtggcatgtccattttccctctactgtgaattt 10582947  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 388 - 473
Target Start/End: Complemental strand, 49122461 - 49122375
Alignment:
Q  388 aatgtttctccacacaaatcaaccaccgataggca-cacctctgccgtcaaactgtggcatgtccattttccccctactgtgaattt 473  Q
    |||||||||| | |||||||||||||| ||| ||  |||  ||||| ||||| |||||||||||||||||||| |||||||||||||    
T  49122461 aatgtttctcaatacaaatcaaccaccaataagcgtcactgctgccatcaaattgtggcatgtccattttccctctactgtgaattt 49122375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 10583136 - 10583063
Alignment:
Q  318 agatggcatcaactccaccgctgccaccata----tgcacggtttcgcaagaatttcaccgcctccaacaactt 387  Q
    |||||||||| |||||||| |||||||||||     |||||||||||||||  |||||||||||||| ||||||    
T  10583136 agatggcatcgactccaccactgccaccatacgagagcacggtttcgcaaggctttcaccgcctccagcaactt 10583063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 49122564 - 49122491
Alignment:
Q  318 agatggcatcaactccaccgctgccaccata----tgcacggtttcgcaagaatttcaccgcctccaacaactt 387  Q
    |||||||||| |||||||| |||||||||||     |||||||||||||||  |||||||||||||| ||||||    
T  49122564 agatggcatcgactccaccactgccaccatacgagagcacggtttcgcaaggctttcaccgcctccagcaactt 49122491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 388 - 473
Target Start/End: Complemental strand, 11409 - 11323
Alignment:
Q  388 aatgtttctccacacaaatcaaccaccgataggca-cacctctgccgtcaaactgtggcatgtccattttccccctactgtgaattt 473  Q
    |||||||||| | |||||||||||||| ||| ||  ||   ||||| ||||| |||||||||||||||||||| |||||||||||||    
T  11409 aatgtttctcaatacaaatcaaccaccaataagcgtcattgctgccatcaaattgtggcatgtccattttccctctactgtgaattt 11323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 388 - 473
Target Start/End: Original strand, 18132869 - 18132955
Alignment:
Q  388 aatgtttctccacacaaatcaaccaccgataggca-cacctctgccgtcaaactgtggcatgtccattttccccctactgtgaattt 473  Q
    |||||||||| | |||||||||||||| ||| ||  |||  ||||| ||||| |||||||||||||||||||| ||||| |||||||    
T  18132869 aatgtttctcaatacaaatcaaccaccaataagcgtcactgctgccatcaaattgtggcatgtccattttccctctactctgaattt 18132955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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