View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706-Insertion-5 (Length: 817)
Name: NF5706-Insertion-5
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 8 - 566
Target Start/End: Original strand, 36172099 - 36172661
Alignment:
| Q |
8 |
aaacattggccaatgtcggatgtgtcaagtgtatgacattggcatgtgtttgagtaccaaagacgtcttcactctgaagtgtttgtgctacataaatggc |
107 |
Q |
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| T |
36172099 |
aaacattggccaatgtcggatgtgtcaagtgtatgacattggcatgtgtttgagtaccaaagacgtcttcactctgaagtgtttgtgctacataaatggc |
36172198 |
T |
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| Q |
108 |
ataaataccttgtttgttggggaggagagaaaagcctcaggagctccgtcactccactcactgcaatcttcagaacctgaggggtttcgtttttctctct |
207 |
Q |
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| T |
36172199 |
atagataccttgtttgttggggaggagagaaaagcctcaggagctccgtcactccactcactgcaatcttcagaacctgaggggtttcgtttttctctct |
36172298 |
T |
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| Q |
208 |
taccatgttataaattgcacaagtgcttctgctactcggtgtgtaactgtttgagcagtgttgtttccgcaactgcaagggcggcgtcgtagtcttaatc |
307 |
Q |
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| T |
36172299 |
taccatgttataaattgcacaagtgtttctgctactcggtgtgtaactgtttgagcagtgttgtttccgcaactgcaagggcggcgtcctagtcttaatc |
36172398 |
T |
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| Q |
308 |
agagattcagtaaacattaatcatcagaatttacttcttcatataaataattcaatttgatcactttacaagtaactcatctcagaataaagacatttat |
407 |
Q |
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| T |
36172399 |
agagattcagtaaacattaatcatcagaatttacttcttcatataaataattcaatttgatcactttacaaataactcatctcagaataaagacatttat |
36172498 |
T |
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| Q |
408 |
tagtagtgtttattacctgggagtggaagtgtaaggctattgttggggattttccgttgaagcagcatgtttttgccatttcattcgacttctttatgat |
507 |
Q |
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| T |
36172499 |
tagtagtgtttattacctgggagtggaagtgtaaggctattgtcggggattttccgttgaagcagcatgtttttgccatttcattcgacttctttatgat |
36172598 |
T |
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| Q |
508 |
tca----attcattcattcatatgttttgcttagaagttagaataggtaatcatttgcaaaag |
566 |
Q |
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| T |
36172599 |
tcaattcattcattcattcatatgttttgcttagaagttagaataggtaatcatttgcaaaag |
36172661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 567 - 817
Target Start/End: Original strand, 36172627 - 36172878
Alignment:
| Q |
567 |
gcttagaagttagaataggtaatcatttgcaaaagatgtt-gtttttactcggttttatttgtccacttaagttcaattcattcatacattttctctgta |
665 |
Q |
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| T |
36172627 |
gcttagaagttagaataggtaatcatttgcaaaagatgtttgtttttactcggttttattggtccacttaagttcaattcattcatacattttctctgta |
36172726 |
T |
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| Q |
666 |
caatccttcagctaattatgtgtggtcctgtcaaaaagaaaactaatttatgtgtggctaacgttccctctccctgcacgcttttgtgaatgaatgagac |
765 |
Q |
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| T |
36172727 |
caatccttcagctaattatgtgtggtcctgtcaaaaagaaaactaatttatgtgtggctaaggttccctctccctgcatgcttttgtgaatgaatgagac |
36172826 |
T |
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| Q |
766 |
ttcttcggtcataaagcattcatgtcagtccatttataattagaagattagg |
817 |
Q |
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| T |
36172827 |
ttcttcggtcataaagcattcatgtcagtccatttataattagaagattagg |
36172878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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