View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5706-Insertion-6 (Length: 710)

Name: NF5706-Insertion-6
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5706-Insertion-6
NF5706-Insertion-6
[»] chr7 (12 HSPs)
chr7 (550-710)||(21972015-21972175)
chr7 (557-710)||(31166439-31166592)
chr7 (550-633)||(31166982-31167066)
chr7 (526-681)||(41539421-41539575)
chr7 (552-633)||(21971546-21971627)
chr7 (550-634)||(28750947-28751032)
chr7 (552-634)||(27230474-27230557)
chr7 (572-633)||(27596013-27596074)
chr7 (619-652)||(15578104-15578137)
chr7 (619-652)||(28750658-28750691)
chr7 (619-652)||(38916124-38916157)
chr7 (550-634)||(38916413-38916498)
[»] chr4 (11 HSPs)
chr4 (549-710)||(28104283-28104448)
chr4 (571-710)||(919038-919177)
chr4 (572-710)||(12639211-12639350)
chr4 (550-633)||(12639749-12639833)
chr4 (550-633)||(28103808-28103892)
chr4 (550-633)||(38147401-38147485)
chr4 (620-681)||(20644756-20644816)
chr4 (550-633)||(917686-917770)
chr4 (620-665)||(25163504-25163549)
chr4 (619-652)||(23643762-23643795)
chr4 (619-652)||(54714595-54714628)
[»] chr3 (5 HSPs)
chr3 (557-710)||(39737217-39737370)
chr3 (555-710)||(23566444-23566599)
chr3 (550-633)||(23566917-23567001)
chr3 (550-633)||(39737752-39737836)
chr3 (619-652)||(53153576-53153609)
[»] chr2 (8 HSPs)
chr2 (562-706)||(29771226-29771370)
chr2 (550-710)||(4330062-4330219)
chr2 (557-710)||(39864784-39864937)
chr2 (550-633)||(39865326-39865410)
chr2 (550-633)||(29770776-29770860)
chr2 (572-633)||(4329630-4329692)
chr2 (550-634)||(30674450-30674535)
chr2 (619-652)||(9914558-9914591)
[»] chr8 (8 HSPs)
chr8 (571-639)||(147184-147252)
chr8 (550-633)||(26759213-26759297)
chr8 (562-605)||(26759656-26759699)
chr8 (550-634)||(146645-146730)
chr8 (620-665)||(14200158-14200203)
chr8 (659-710)||(147127-147178)
chr8 (550-634)||(186684-186769)
chr8 (550-634)||(308314-308399)
[»] chr5 (4 HSPs)
chr5 (550-633)||(39121862-39121946)
chr5 (550-632)||(14393985-14394068)
chr5 (550-634)||(25672274-25672359)
chr5 (619-652)||(25672611-25672644)
[»] chr1 (3 HSPs)
chr1 (620-665)||(23270027-23270072)
chr1 (550-634)||(40888794-40888879)
chr1 (619-652)||(40889126-40889159)
[»] chr6 (7 HSPs)
chr6 (620-664)||(10777280-10777324)
chr6 (550-628)||(604987-605066)
chr6 (623-657)||(8924794-8924828)
chr6 (623-657)||(8935051-8935085)
chr6 (550-634)||(8700898-8700983)
chr6 (619-652)||(8701244-8701277)
chr6 (619-652)||(12307050-12307083)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 9e-69; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 550 - 710
Target Start/End: Complemental strand, 21972175 - 21972015
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaatataaaatatgtcaactaattaaaataagaaatagttgtat 649  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  21972175 ataaggaacaattaaaatgcattaaataaatgaatctcacttaattcatcttaattaaatgtaaaatatgtcaactaattaaaataagaaatagttgtat 21972076  T
Q  650 ttaatactgcaaattttctttcgtttacacagttaaataccacacgcgcgcgtgcttctca 710  Q
    ||||||||||||||||||| || |||||| ||||||||||||||||||| |||||||||||    
T  21972075 ttaatactgcaaattttctgtcctttacatagttaaataccacacgcgctcgtgcttctca 21972015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 557 - 710
Target Start/End: Original strand, 31166439 - 31166592
Alignment:
Q  557 acaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaatataaaatatgtcaactaattaaaataagaaatagttgtatttaatac 656  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |||||||| ||||||||| || |||||||||||||||||||    
T  31166439 acaattaatatgcattaaataaatgaatctcatttaattcatctcaaataaatgtaaactatgtcaattaattaaaacaaaaaatagttgtatttaatac 31166538  T
Q  657 tgcaaattttctttcgtttacacagttaaataccacacgcgcgcgtgcttctca 710  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  31166539 tgcaaattttctttcctttacacagttaaataccacacgagcgcgtgcttctca 31166592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 550 - 633
Target Start/End: Complemental strand, 31167066 - 31166982
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaa 633  Q
    |||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  31167066 ataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataatatatgtcaactaattaaaa 31166982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 526 - 681
Target Start/End: Original strand, 41539421 - 41539575
Alignment:
Q  526 gggtgctgctaaccagtgcccccaataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaac 624  Q
    ||||||||||||| ||||||||  ||||| |||||| |||| ||| ||||||||||||||| | ||  || || | ||||||| ||   |||| || |||    
T  41539421 gggtgctgctaacaagtgcccc--ataagaaacaataaataggcaataaataaatgaatcttagttggtttattttaattaaagtaggtaataagtgaac 41539518  T
Q  625 taattaaaataagaaatagttgtatttaatactgcaaattttctttcgtttacacag 681  Q
    |||||||||||| |||||| ||||||||||  ||||||||| ||||| |||||||||    
T  41539519 taattaaaataaaaaatagctgtatttaattatgcaaatttcctttcctttacacag 41539575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 552 - 633
Target Start/End: Original strand, 21971546 - 21971627
Alignment:
Q  552 aaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaa 633  Q
    |||||||||| ||||   ||||||||||||| |||||||||| |||||||||||||| ||||| |||||||||||||||||||    
T  21971546 aaggaacaataaataataattaaataaatga-tctcacttaactcatctcaattaaagtataatatatgtcaactaattaaaa 21971627  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 550 - 634
Target Start/End: Complemental strand, 28751032 - 28750947
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaat 634  Q
    |||||||||||| |||| ||| |||||||||| |||||||||| || | || ||||||| | |||||||| |||||||||||||||    
T  28751032 ataaggaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaat 28750947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 552 - 634
Target Start/End: Original strand, 27230474 - 27230557
Alignment:
Q  552 aaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaat 634  Q
    |||||||||||||||  || ||||||||||||||||| || ||| | || ||||||| | |||||||| |||||||||||||||    
T  27230474 aaggaacaattaatagacaataaataaatgaatctcatttgatttaccttaattaaagtgtaaaatatttcaactaattaaaat 27230557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 572 - 633
Target Start/End: Original strand, 27596013 - 27596074
Alignment:
Q  572 taaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaa 633  Q
    |||||||||| |||||||||||||||||||||||||| | ||| ||| |||||||||||||||    
T  27596013 taaataaatggatctcacttaattcatctcaattaaagtgtaatata-gtcaactaattaaaa 27596074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 652
Target Start/End: Complemental strand, 15578137 - 15578104
Alignment:
Q  619 gtcaactaattaaaataagaaatagttgtattta 652  Q
    |||||||||||||||||||| |||||||||||||    
T  15578137 gtcaactaattaaaataagatatagttgtattta 15578104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 652
Target Start/End: Original strand, 28750658 - 28750691
Alignment:
Q  619 gtcaactaattaaaataagaaatagttgtattta 652  Q
    |||||||||||||||||||| |||||||||||||    
T  28750658 gtcaactaattaaaataagatatagttgtattta 28750691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 652
Target Start/End: Original strand, 38916124 - 38916157
Alignment:
Q  619 gtcaactaattaaaataagaaatagttgtattta 652  Q
    |||||||||||||||||||| |||||||||||||    
T  38916124 gtcaactaattaaaataagatatagttgtattta 38916157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 634
Target Start/End: Complemental strand, 38916498 - 38916413
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaat 634  Q
    |||| ||||||| ||||  || |||||||||| ||||||||| ||| | || ||||||| | |||||||| |||||||||||||||    
T  38916498 ataaagaacaataaatagacaataaataaatggatctcacttgatttaccttaattaaagtgtaaaatatttcaactaattaaaat 38916413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 1e-61; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 549 - 710
Target Start/End: Complemental strand, 28104448 - 28104283
Alignment:
Q  549 aataaggaacaattaatatgcattaa----ataaatgaatctcacttaattcatctcaattaaatataaaatatgtcaactaattaaaataagaaatagt 644  Q
    ||||||||||||||||||||||||||    ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  28104448 aataaggaacaattaatatgcattaattaaataaatggatctcacttaattcatctcaattaaatgtaaaatatatcaactaattaaaataagaaatagt 28104349  T
Q  645 tgtatttaatactgcaaattttctttcgtttacacagttaaataccacacgcgcgcgtgcttctca 710  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||| || |||||||||||||    
T  28104348 tgtatttaatactgcaaattttctttcctttacacagctaaataccacatgcacgcgtgcttctca 28104283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 571 - 710
Target Start/End: Complemental strand, 919177 - 919038
Alignment:
Q  571 ttaaataaatgaatctcacttaattcatctcaattaaatataaaatatgtcaactaattaaaataagaaatagttgtatttaatactgcaaattttcttt 670  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  919177 ttaaataaatgaatctcacttaattcatctcaattaaatgtaaaatatatcaactaattaaaataagaaatagttgtatttaatactgcaaatgttcttt 919078  T
Q  671 cgtttacacagttaaataccacacgcgcgcgtgcttctca 710  Q
    | |||||| || |||||| |||||| ||||||||||||||    
T  919077 catttacatagctaaatatcacacgtgcgcgtgcttctca 919038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 572 - 710
Target Start/End: Original strand, 12639211 - 12639350
Alignment:
Q  572 taaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaataagaaatagttgtatttaatactgcaaattttcttt 670  Q
    |||||||||| ||||||||||||| | |||||||||  | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12639211 taaataaatggatctcacttaatttacctcaattaatgtgtaaaatatgtcaactaattaaaataaaaaatagttgtatttaatactgcaaattttcttt 12639310  T
Q  671 cgtttacacagttaaataccacacgcgcgcgtgcttctca 710  Q
    | ||||||||  ||||||||||||||||||||||||||||    
T  12639311 cctttacacatctaaataccacacgcgcgcgtgcttctca 12639350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 550 - 633
Target Start/End: Complemental strand, 12639833 - 12639749
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaa 633  Q
    |||||||||||| |||| ||| |||||||||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||    
T  12639833 ataaggaacaataaataggcaataaataaatggatctcacttaattcacctcaattaaagtgtaaaatatgtcaactaattaaaa 12639749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 550 - 633
Target Start/End: Original strand, 28103808 - 28103892
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaatta-aatataaaatatgtcaactaattaaaa 633  Q
    |||||||||||| ||||  ||||||||||||| |||||||||||||||||||||||| | | ||| |||||||||||||||||||    
T  28103808 ataaggaacaataaataatcattaaataaatggatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaa 28103892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 550 - 633
Target Start/End: Original strand, 38147401 - 38147485
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaa 633  Q
    |||||||||| | ||||  || |||||||||| |||||||||||||||||||||||||| | ||| |||||||||||||||||||    
T  38147401 ataaggaacagtaaatagtcaataaataaatggatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 38147485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 620 - 681
Target Start/End: Original strand, 20644756 - 20644816
Alignment:
Q  620 tcaactaattaaaataagaaatagttgtatttaatactgcaaattttctttcgtttacacag 681  Q
    |||| |||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  20644756 tcaattaattaaaataa-aaatagttgtatttaatactgcaaatttcctttcatttacacag 20644816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 550 - 633
Target Start/End: Original strand, 917686 - 917770
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaa 633  Q
    |||| ||||||| ||||  || ||||||||||||||| | ||||||||||||||||||| | ||| |||||||||||||||||||    
T  917686 ataaagaacaataaatagtcaataaataaatgaatctaagttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 917770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 665
Target Start/End: Original strand, 25163504 - 25163549
Alignment:
Q  620 tcaactaattaaaataagaaatagttgtatttaatactgcaaattt 665  Q
    |||||||| ||||||||||||||||| ||||||||| |||||||||    
T  25163504 tcaactaaataaaataagaaatagttatatttaatagtgcaaattt 25163549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 652
Target Start/End: Complemental strand, 23643795 - 23643762
Alignment:
Q  619 gtcaactaattaaaataagaaatagttgtattta 652  Q
    |||||||||||||||||||| |||||||||||||    
T  23643795 gtcaactaattaaaataagatatagttgtattta 23643762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 652
Target Start/End: Original strand, 54714595 - 54714628
Alignment:
Q  619 gtcaactaattaaaataagaaatagttgtattta 652  Q
    |||||||||||||||||||| |||||||||||||    
T  54714595 gtcaactaattaaaataagatatagttgtattta 54714628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 8e-60; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 557 - 710
Target Start/End: Original strand, 39737217 - 39737370
Alignment:
Q  557 acaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaatataaaatatgtcaactaattaaaataagaaatagttgtatttaatac 656  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39737217 acaattaatatgcattaaataaatgaatctcacttaatccatctcaattaaatgtaaaatatgtcaactaattaaaataagaaatagttgtatttaatac 39737316  T
Q  657 tgcaaattttctttcgtttacacagttaaataccacacgcgcgcgtgcttctca 710  Q
    || | |||||||||| |||||||| ||||||| ||||||| ||| |||||||||    
T  39737317 tgtatattttctttcctttacacatttaaatatcacacgcacgcatgcttctca 39737370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 555 - 710
Target Start/End: Original strand, 23566444 - 23566599
Alignment:
Q  555 gaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaatataaaatatgtcaactaattaaaataagaaatagttgtatttaat 654  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |||| |||||||||||||||||| || |||||||||||||||||    
T  23566444 gaacaattaatatgcattaaataaataaatcttacttaattcatctcaaataaatgtaaactatgtcaactaattaaaacaaaaaatagttgtatttaat 23566543  T
Q  655 actgcaaattttctttcgtttacacagttaaataccacacgcgcgcgtgcttctca 710  Q
    ||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||    
T  23566544 actgcaaattttcattcctttacacagttaaataccacacgagcgcgtgcttctca 23566599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 550 - 633
Target Start/End: Complemental strand, 23567001 - 23566917
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaa 633  Q
    |||||||||||| ||||   ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  23567001 ataaggaacaataaatagtaattaaataaatgaatatcacttaattcatctcaattaaagtataatatatgtcaactaattaaaa 23566917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 633
Target Start/End: Complemental strand, 39737836 - 39737752
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaatt-aaatataaaatatgtcaactaattaaaa 633  Q
    |||||||||||| ||||   |||||||||||  |||| | |||||||||||||||| |||||||| |||||| ||||||||||||    
T  39737836 ataaggaacaataaatagtaattaaataaatagatcttatttaattcatctcaattaaaatataatatatgttaactaattaaaa 39737752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 652
Target Start/End: Original strand, 53153576 - 53153609
Alignment:
Q  619 gtcaactaattaaaataagaaatagttgtattta 652  Q
    |||||||||||||||||||| |||||||||||||    
T  53153576 gtcaactaattaaaataagatatagttgtattta 53153609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 3e-59; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 562 - 706
Target Start/End: Complemental strand, 29771370 - 29771226
Alignment:
Q  562 taatatgcattaaataaatgaatctcacttaattcatctcaattaaatataaaatatgtcaactaattaaaataagaaatagttgtatttaatactgcaa 661  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||  |||    
T  29771370 taatatgcattaaataaatgaatctcacttaattcatctcaattatatgtaaaatatgtcaactaattaaaataagaaatagttgtaattaatacaacaa 29771271  T
Q  662 attttctttcgtttacacagttaaataccacacgcgcgcgtgctt 706  Q
    | |||||||| ||||||||||||||||||||||||||||||||||    
T  29771270 aatttctttcctttacacagttaaataccacacgcgcgcgtgctt 29771226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 550 - 710
Target Start/End: Complemental strand, 4330219 - 4330062
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaatataaaatatgtcaactaattaaaataagaaatagttgtat 649  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||    
T  4330219 ataaggaacaattaatatgcattaaataaatggatctcacttaattcatctcaattaaatgtaaaatatgttaactaattaaaataa-aaatagttgtat 4330121  T
Q  650 ttaatactgcaaattttctttcgtttacacagttaaataccacacgcgcgcgtgcttctca 710  Q
    |||||||||||||||||||||| |||||| || |||||||   ||||||||||||||||||    
T  4330120 ttaatactgcaaattttctttcctttacatagctaaatac--gacgcgcgcgtgcttctca 4330062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 557 - 710
Target Start/End: Original strand, 39864784 - 39864937
Alignment:
Q  557 acaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaatataaaatatgtcaactaattaaaataagaaatagttgtatttaatac 656  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |||||||| ||||||||| || |||||||| ||||||||||    
T  39864784 acaattaatatgcattaaataaatgaatctcatttaattcatctcaaataaatgtaaactatgtcaattaattaaaacaaaaaatagttatatttaatac 39864883  T
Q  657 tgcaaattttctttcgtttacacagttaaataccacacgcgcgcgtgcttctca 710  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  39864884 tgcaaattttctttcctttacacagttaaataccacacgagcgcgtgcttctca 39864937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 550 - 633
Target Start/End: Complemental strand, 39865410 - 39865326
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaa 633  Q
    |||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  39865410 ataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataatatatgtcaactaattaaaa 39865326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 550 - 633
Target Start/End: Original strand, 29770776 - 29770860
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaa 633  Q
    |||||||||||| ||||   ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  29770776 ataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcagttaaagtataatatatgtcaactaattaaaa 29770860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 572 - 633
Target Start/End: Original strand, 4329630 - 4329692
Alignment:
Q  572 taaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaa 633  Q
    |||||||||  |||||||||||||||||||||||||| | ||| |||||||||||||||||||    
T  4329630 taaataaatagatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 4329692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 550 - 634
Target Start/End: Complemental strand, 30674535 - 30674450
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaatt-aaatataaaatatgtcaactaattaaaat 634  Q
    |||| |||||||||||| ||| |||||||||  ||||||||| ||| |||| |||| |||| |||||||| |||||||||||||||    
T  30674535 ataaagaacaattaataagcaataaataaatagatctcacttgatttatcttaattaaaatgtaaaatatttcaactaattaaaat 30674450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 652
Target Start/End: Complemental strand, 9914591 - 9914558
Alignment:
Q  619 gtcaactaattaaaataagaaatagttgtattta 652  Q
    |||||||||||||||||||| |||||||||||||    
T  9914591 gtcaactaattaaaataagatatagttgtattta 9914558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 571 - 639
Target Start/End: Complemental strand, 147252 - 147184
Alignment:
Q  571 ttaaataaatgaatctcacttaattcatctcaattaaatataaaatatgtcaactaattaaaataagaa 639  Q
    ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  147252 ttaaatatatggatctcacttaattcatcttaattaaatataaaatatgtcaactaattaaaataagaa 147184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 550 - 633
Target Start/End: Original strand, 26759213 - 26759297
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaa 633  Q
    |||||||||||| ||||   |||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  26759213 ataaggaacaataaatagtaattaaataaatggatctcacttaattcatctcaattaaagtataatatatgccaactaattaaaa 26759297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 562 - 605
Target Start/End: Complemental strand, 26759699 - 26759656
Alignment:
Q  562 taatatgcattaaataaatgaatctcacttaattcatctcaatt 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  26759699 taatatgcattaaataaatgaatctcacttaattcatctcaatt 26759656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 550 - 634
Target Start/End: Original strand, 146645 - 146730
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaat 634  Q
    |||| ||||||| ||||  ||||||||||||| ||||||||| ||| |||||||||||| | ||| ||||||||||||||||||||    
T  146645 ataatgaacaataaatagccattaaataaatggatctcactttattaatctcaattaaagtgtaatatatgtcaactaattaaaat 146730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 620 - 665
Target Start/End: Complemental strand, 14200203 - 14200158
Alignment:
Q  620 tcaactaattaaaataagaaatagttgtatttaatactgcaaattt 665  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||    
T  14200203 tcaactaattaaaataagaaatagttatatttaatagtgcaaattt 14200158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 659 - 710
Target Start/End: Complemental strand, 147178 - 147127
Alignment:
Q  659 caaattttctttcgtttacacagttaaataccacacgcgcgcgtgcttctca 710  Q
    ||||||||||||| ||||||||| |||||| |||| ||||||||||||||||    
T  147178 caaattttctttcctttacacagctaaatatcacatgcgcgcgtgcttctca 147127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 634
Target Start/End: Original strand, 186684 - 186769
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaat 634  Q
    |||||||||||| ||||   | |||||||||| ||||||||| ||| |||| ||||||| | |||||||| |||||||||||||||    
T  186684 ataaggaacaataaatagctaataaataaatggatctcacttgatttatcttaattaaattgtaaaatatttcaactaattaaaat 186769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 634
Target Start/End: Original strand, 308314 - 308399
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaat 634  Q
    |||| ||||||| |||| ||| |||||||||| |||||||||| || | || ||||||| | |||||||| |||||||||||||||    
T  308314 ataatgaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaat 308399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 550 - 633
Target Start/End: Complemental strand, 39121946 - 39121862
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaa 633  Q
    |||||||||||| ||||   |||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  39121946 ataaggaacaataaatagtaattaaataaatgaatctcacttaatttatctcaattaaagtataatatatgtcaactaattaaaa 39121862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 550 - 632
Target Start/End: Original strand, 14393985 - 14394068
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaatt-aaatataaaatatgtcaactaattaaa 632  Q
    |||||||||||| |||| ||| |||||||||| ||||||||| ||| |||| |||| |||| |||||||| |||||||||||||    
T  14393985 ataaggaacaataaataagcaataaataaatggatctcacttgatttatcttaattaaaatgtaaaatatttcaactaattaaa 14394068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 550 - 634
Target Start/End: Original strand, 25672274 - 25672359
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaat 634  Q
    |||||||||||| |||||||| |||||||||| |||||||||  || || | ||||||| | |||||||| |||||||||||||||    
T  25672274 ataaggaacaatgaatatgcaataaataaatggatctcacttggtttatattaattaaagtgtaaaatatttcaactaattaaaat 25672359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 652
Target Start/End: Complemental strand, 25672644 - 25672611
Alignment:
Q  619 gtcaactaattaaaataagaaatagttgtattta 652  Q
    |||||||||||||||||||| |||||||||||||    
T  25672644 gtcaactaattaaaataagatatagttgtattta 25672611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 620 - 665
Target Start/End: Original strand, 23270027 - 23270072
Alignment:
Q  620 tcaactaattaaaataagaaatagttgtatttaatactgcaaattt 665  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||    
T  23270027 tcaactaattaaaataagaaatagttatatttaatagtgcaaattt 23270072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 634
Target Start/End: Original strand, 40888794 - 40888879
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaat 634  Q
    ||||| ||||||||||| ||| || ||||||| |||| |||| ||| |||| ||||||| | |||||||| |||||||||||||||    
T  40888794 ataagaaacaattaataggcaatacataaatggatctaacttgatttatcttaattaaagtgtaaaatatttcaactaattaaaat 40888879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 652
Target Start/End: Complemental strand, 40889159 - 40889126
Alignment:
Q  619 gtcaactaattaaaataagaaatagttgtattta 652  Q
    |||||||||||||||||||| |||||||||||||    
T  40889159 gtcaactaattaaaataagatatagttgtattta 40889126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 664
Target Start/End: Original strand, 10777280 - 10777324
Alignment:
Q  620 tcaactaattaaaataagaaatagttgtatttaatactgcaaatt 664  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||    
T  10777280 tcaactaattaaaataagaaatagttatatttaatagtgcaaatt 10777324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 550 - 628
Target Start/End: Original strand, 604987 - 605066
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaat 628  Q
    |||||||||||| |||| ||| |||||||||| ||||||||| ||| | || ||||||| |||||||||| |||||||||    
T  604987 ataaggaacaataaataggcaataaataaatggatctcacttgatttaccttaattaaagtataaaatatttcaactaat 605066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 657
Target Start/End: Complemental strand, 8924828 - 8924794
Alignment:
Q  623 actaattaaaataagaaatagttgtatttaatact 657  Q
    |||||||||||||||||| ||||||||||||||||    
T  8924828 actaattaaaataagaaaaagttgtatttaatact 8924794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 657
Target Start/End: Complemental strand, 8935085 - 8935051
Alignment:
Q  623 actaattaaaataagaaatagttgtatttaatact 657  Q
    |||||||||||||||||| ||||||||||||||||    
T  8935085 actaattaaaataagaaaaagttgtatttaatact 8935051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 634
Target Start/End: Original strand, 8700898 - 8700983
Alignment:
Q  550 ataaggaacaattaatatgcattaaataaatgaatctcacttaattcatctcaattaaa-tataaaatatgtcaactaattaaaat 634  Q
    |||||||||||| |||| ||| |||||| ||| ||||||||| ||| | || ||||||| | |||||||| | |||||||||||||    
T  8700898 ataaggaacaataaataggcaataaatagatggatctcacttgatttaccttaattaaagtgtaaaatattttaactaattaaaat 8700983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 652
Target Start/End: Complemental strand, 8701277 - 8701244
Alignment:
Q  619 gtcaactaattaaaataagaaatagttgtattta 652  Q
    |||||||||||||||||||| |||||||||||||    
T  8701277 gtcaactaattaaaataagatatagttgtattta 8701244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 652
Target Start/End: Original strand, 12307050 - 12307083
Alignment:
Q  619 gtcaactaattaaaataagaaatagttgtattta 652  Q
    |||||||||||||||||||| |||||||||||||    
T  12307050 gtcaactaattaaaataagatatagttgtattta 12307083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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