View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5706_high_12 (Length: 482)

Name: NF5706_high_12
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5706_high_12
NF5706_high_12
[»] chr5 (10 HSPs)
chr5 (307-416)||(6593178-6593288)
chr5 (307-398)||(42573880-42573971)
chr5 (308-413)||(30291140-30291246)
chr5 (296-413)||(1618959-1619075)
chr5 (373-413)||(43215323-43215363)
chr5 (366-401)||(26516235-26516270)
chr5 (307-398)||(41059598-41059689)
chr5 (307-413)||(14674986-14675092)
chr5 (367-407)||(18704127-18704167)
chr5 (307-351)||(37914648-37914692)
[»] chr8 (8 HSPs)
chr8 (312-401)||(9956910-9956998)
chr8 (308-413)||(37353334-37353439)
chr8 (348-427)||(37444487-37444566)
chr8 (334-401)||(8216785-8216852)
chr8 (365-426)||(26215432-26215493)
chr8 (368-417)||(4558737-4558787)
chr8 (368-413)||(40598938-40598984)
chr8 (312-408)||(41442525-41442622)
[»] chr3 (6 HSPs)
chr3 (143-191)||(43881407-43881455)
chr3 (368-426)||(27896250-27896308)
chr3 (307-410)||(30574002-30574104)
chr3 (313-413)||(35127456-35127557)
chr3 (368-413)||(2128336-2128382)
chr3 (369-417)||(1395611-1395660)
[»] chr1 (13 HSPs)
chr1 (303-403)||(1829050-1829149)
chr1 (353-427)||(4256114-4256188)
chr1 (307-362)||(35058893-35058948)
chr1 (366-413)||(34619463-34619511)
chr1 (304-387)||(5894275-5894357)
chr1 (353-427)||(38160075-38160148)
chr1 (371-417)||(38578469-38578516)
chr1 (310-427)||(27146320-27146436)
chr1 (367-410)||(172665-172709)
chr1 (298-342)||(1510476-1510519)
chr1 (366-413)||(4549803-4549851)
chr1 (366-417)||(6976885-6976937)
chr1 (365-401)||(33527245-33527281)
[»] chr4 (6 HSPs)
chr4 (308-413)||(17883947-17884053)
chr4 (300-378)||(50298402-50298480)
chr4 (311-413)||(44138442-44138544)
chr4 (362-413)||(54392904-54392955)
chr4 (366-417)||(24160927-24160979)
chr4 (317-401)||(42641731-42641815)
[»] chr7 (4 HSPs)
chr7 (299-384)||(7612329-7612414)
chr7 (307-351)||(12110254-12110298)
chr7 (308-427)||(43250751-43250870)
chr7 (309-413)||(47795838-47795940)
[»] chr2 (6 HSPs)
chr2 (302-395)||(15288710-15288803)
chr2 (303-340)||(39341215-39341252)
chr2 (301-413)||(39567775-39567888)
chr2 (353-417)||(8017359-8017423)
chr2 (316-401)||(9833042-9833127)
chr2 (299-328)||(44458489-44458518)
[»] chr6 (3 HSPs)
chr6 (301-412)||(264244-264355)
chr6 (353-427)||(9093628-9093702)
chr6 (309-417)||(32206101-32206210)


Alignment Details
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 416
Target Start/End: Original strand, 6593178 - 6593288
Alignment:
Q  307 cctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagat-aaataaa 405  Q
    |||||||||||||||| ||||||||  | ||||||| |||  ||  |||| |||||| ||||||||||||| | ||||||| |||||||||| |||||||    
T  6593178 cctgtttggataaacaacttaatttacagcttatagcataatcatttatcttgatacgcgcttatgtataaacaatttctataacaaaagataaaataaa 6593277  T
Q  406 gttaaattatt 416  Q
    |||||||||||    
T  6593278 gttaaattatt 6593288  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 307 - 398
Target Start/End: Complemental strand, 42573971 - 42573880
Alignment:
Q  307 cctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagat 398  Q
    |||||||||||||||||||||||||| | |||||||  |  || | ||||||||||  ||||||||||||||| ||||||| ||||||||||    
T  42573971 cctgtttggataaacagcttaatttgcagcttatagcctgagcgcttatcatgataagcgcttatgtataagctatttctataacaaaagat 42573880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 308 - 413
Target Start/End: Original strand, 30291140 - 30291246
Alignment:
Q  308 ctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaag-ataaataaag 406  Q
    |||||||||||| || ||||||||| | ||||||| |||  ||| |||||||||| ||||||||| |||| | ||||| | |||||||| |||||||| |    
T  30291140 ctgtttggataaccaacttaatttgcagcttatagcataaacacttatcatgataaacgcttatgcataacctatttccataacaaaagtataaataacg 30291239  T
Q  407 ttaaatt 413  Q
    |||||||    
T  30291240 ttaaatt 30291246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 413
Target Start/End: Original strand, 1618959 - 1619075
Alignment:
Q  296 agaactaaggtcctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaa 395  Q
    ||||||||||||||||||| || || |||||||||||   ||||||| ||| || | | | ||||||  | ||| ||||||||| |||||||||||||||    
T  1618959 agaactaaggtcctgtttgcatgaagagcttaatttgctgcttatagcataagcgcttttgatgataagcacttttgtataagctatttctaaaacaaaa 1619058  T
Q  396 gataaataaagttaaatt 413  Q
     || ||||||||||||||    
T  1619059 aat-aataaagttaaatt 1619075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 413
Target Start/End: Original strand, 43215323 - 43215363
Alignment:
Q  373 tataagccatttctaaaacaaaagataaataaagttaaatt 413  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  43215323 tataagctatttctataacaaaagataaataaagttaaatt 43215363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 401
Target Start/End: Original strand, 26516235 - 26516270
Alignment:
Q  366 gcttatgtataagccatttctaaaacaaaagataaa 401  Q
    |||||||||||||| |||||||||||||||||||||    
T  26516235 gcttatgtataagctatttctaaaacaaaagataaa 26516270  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 398
Target Start/End: Original strand, 41059598 - 41059689
Alignment:
Q  307 cctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagat 398  Q
    ||||||||  |||||| ||||||||||| ||||||  ||| |||| ||||||||||   ||||||| |||||| |||||||  |||||||||    
T  41059598 cctgtttgtctaaacaacttaatttgtagcttatatgataagcacttatcatgataattgcttatgcataagctatttctatcacaaaagat 41059689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 413
Target Start/End: Complemental strand, 14675092 - 14674986
Alignment:
Q  307 cctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagataaataaag 406  Q
    |||||||||| ||||| ||||||||| | ||||| | |||   |  ||||||||||   ||||||||| |||| ||||||| |||||  |||||||||||    
T  14675092 cctgtttggacaaacaacttaatttgcagcttatggcataaatagttatcatgataagtgcttatgtagaagctatttctataacaagtgataaataaag 14674993  T
Q  407 ttaaatt 413  Q
    |||||||    
T  14674992 ttaaatt 14674986  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 18704167 - 18704127
Alignment:
Q  367 cttatgtataagccatttctaaaacaaaagataaataaagt 407  Q
    ||||||||||||  ||||||| |||||||||||||||||||    
T  18704167 cttatgtataagttatttctataacaaaagataaataaagt 18704127  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 37914648 - 37914692
Alignment:
Q  307 cctgtttggataaacagcttaatttgtaacttatagaatatgcac 351  Q
    |||||||||||||||||||||||||||| ||| ||| ||| ||||    
T  37914648 cctgtttggataaacagcttaatttgtagcttctagcataagcac 37914692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 9956998 - 9956910
Alignment:
Q  312 ttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagataaa 401  Q
    ||||||||||| |||| |||||| ||||||| | | |||| ||||||||||||||||||||| | ||| ||||||| |||||||||||||    
T  9956998 ttggataaacaactta-tttgtagcttatagcacaagcacttatcatgatacacgcttatgtttgagctatttctataacaaaagataaa 9956910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 413
Target Start/End: Complemental strand, 37353439 - 37353334
Alignment:
Q  308 ctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagataaataaagt 407  Q
    ||||||||||||||| ||| ||||| | ||||||| |||    | ||| ||||||  |||||||||| || | ||||||| |||||||||||||||||||    
T  37353439 ctgtttggataaacaacttgatttgcagcttatagcataaatgcttatgatgataagcgcttatgtacaaactatttctataacaaaagataaataaagt 37353340  T
Q  408 taaatt 413  Q
    ||||||    
T  37353339 taaatt 37353334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 427
Target Start/End: Complemental strand, 37444566 - 37444487
Alignment:
Q  348 gcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagataaa-taaagttaaattatttgtcgtataag 427  Q
    |||| ||||||||||  ||||||||||||||| ||| ||| ||||||||||||| |||||||||||| ||| |||||||||    
T  37444566 gcacttatcatgataagcgcttatgtataagctattactataacaaaagataaagtaaagttaaattgttt-tcgtataag 37444487  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 8216785 - 8216852
Alignment:
Q  334 aacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagataaa 401  Q
    ||||||||| |||  ||| |||||||||| || |||||||||||||||||| || |||||||||||||    
T  8216785 aacttatagcataaacacttatcatgataaacacttatgtataagccatttatataacaaaagataaa 8216852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 426
Target Start/End: Original strand, 26215432 - 26215493
Alignment:
Q  365 cgcttatgtataagccatttctaaaacaaaagat-aaataaagttaaattatttgtcgtataa 426  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||||| ||||| ||||||||    
T  26215432 cgcttatgtataagctatttctataacaaaagataaaataaagttaaactattt-tcgtataa 26215493  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 4558737 - 4558787
Alignment:
Q  368 ttatgtataagccatttctaaaacaaaagat-aaataaagttaaattattt 417  Q
    |||||||||||| ||||||| || ||||||| |||||||||||||||||||    
T  4558737 ttatgtataagctatttctataataaaagataaaataaagttaaattattt 4558787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 413
Target Start/End: Complemental strand, 40598984 - 40598938
Alignment:
Q  368 ttatgtataagccatttctaaaacaaaagat-aaataaagttaaatt 413  Q
    |||||||||||| ||||||||||||||||||  ||||||||||||||    
T  40598984 ttatgtataagctatttctaaaacaaaagatggaataaagttaaatt 40598938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 408
Target Start/End: Complemental strand, 41442622 - 41442525
Alignment:
Q  312 ttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaaga-taaataaagtt 408  Q
    |||||||||||||||||||| || ||||||| |||  ||| ||||||||||    |||||||||| ||  |||||| ||||||| | |||||||||||    
T  41442622 ttggataaacagcttaatttttagcttatagcataaacacttatcatgataagtacttatgtataggctttttctataacaaaatattaaataaagtt 41442525  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 43881407 - 43881455
Alignment:
Q  143 aaaacttgagtacctgatagtcattccatgaccttgtcatctcttcata 191  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  43881407 aaaacttgagtacctgataatcattccataaccttgtcatctcttcata 43881455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 426
Target Start/End: Complemental strand, 27896308 - 27896250
Alignment:
Q  368 ttatgtataagccatttctaaaacaaaagataaataaagttaaattatttgtcgtataa 426  Q
    |||||||||||| ||||| |  |||||||||||||||||||||||||||| | ||||||    
T  27896308 ttatgtataagctatttccatgacaaaagataaataaagttaaattatttattgtataa 27896250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 410
Target Start/End: Complemental strand, 30574104 - 30574002
Alignment:
Q  307 cctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagat-aaataaa 405  Q
    |||||||||||||||| | ||||||| | ||||||  ||| |||  ||||||||||  ||||||||||||||| ||||||| |  ||||||| |||||||    
T  30574104 cctgtttggataaacaccataatttgcagcttatatcataagcatttatcatgataagcgcttatgtataagctatttctata--aaaagataaaataaa 30574007  T
Q  406 gttaa 410  Q
    |||||    
T  30574006 gttaa 30574002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 35127557 - 35127456
Alignment:
Q  313 tggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagata-aataaagttaaa 411  Q
    |||||||||||||| ||||| | ||||||  ||| || | ||||||||||   ||||||||||| || ||||||| ||||||||||| | ||||||||||    
T  35127557 tggataaacagcttcatttgcagcttataccataagctcttatcatgataagtgcttatgtataggctatttctataacaaaagatatactaaagttaaa 35127458  T
Q  412 tt 413  Q
    ||    
T  35127457 tt 35127456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 413
Target Start/End: Complemental strand, 2128382 - 2128336
Alignment:
Q  368 ttatgtataagccatttctaaaacaaaagat-aaataaagttaaatt 413  Q
    |||||||||||| ||||||| |||||||||| |||||||||||||||    
T  2128382 ttatgtataagctatttctataacaaaagataaaataaagttaaatt 2128336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 417
Target Start/End: Original strand, 1395611 - 1395660
Alignment:
Q  369 tatgtataagccatttctaaaacaaaagat-aaataaagttaaattattt 417  Q
    ||||||||||| ||||||| |||||||||| ||||||||| |||||||||    
T  1395611 tatgtataagctatttctataacaaaagataaaataaagtcaaattattt 1395660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 403
Target Start/End: Complemental strand, 1829149 - 1829050
Alignment:
Q  303 aggtcctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagataaat 402  Q
    |||||||||||||||||||| |||| |||| ||| ||||| |||  ||| ||||||||||  |||||||||||||| ||||| || ||||||||| ||||    
T  1829149 aggtcctgtttggataaacaactta-tttgaaacctatagcataaacacttatcatgataagcgcttatgtataagtcatttttataacaaaagaaaaat 1829051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 427
Target Start/End: Complemental strand, 4256188 - 4256114
Alignment:
Q  353 tatcatgatacacgcttatgtataagccatttctaaaacaaaagata-aataaagttaaattatttgtcgtataag 427  Q
    |||||||||||  | |||||||||||| ||||||| ||||||||||| |||||||||||||||||| |||||||||    
T  4256188 tatcatgatacgtgtttatgtataagctatttctacaacaaaagatacaataaagttaaattattt-tcgtataag 4256114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 362
Target Start/End: Complemental strand, 35058948 - 35058893
Alignment:
Q  307 cctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgata 362  Q
    ||||||||||||||||||||| |||| ||||||||| ||| |||| ||||||||||    
T  35058948 cctgtttggataaacagcttattttgcaacttatagcataagcacttatcatgata 35058893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 413
Target Start/End: Complemental strand, 34619511 - 34619463
Alignment:
Q  366 gcttatgtataagccatttctaaaacaaaagat-aaataaagttaaatt 413  Q
    |||||||||||||||||||||| |||||||||| |||||| ||||||||    
T  34619511 gcttatgtataagccatttctataacaaaagataaaataaggttaaatt 34619463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 5894357 - 5894275
Alignment:
Q  304 ggtcctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttcta 387  Q
    ||||||||||||||||||||||| ||||| | ||||||| | | |  | ||||||||||  ||||||||||||||| |||||||    
T  5894357 ggtcctgtttggataaacagctt-atttgaagcttatagcacaagtgcttatcatgataagcgcttatgtataagctatttcta 5894275  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 427
Target Start/End: Complemental strand, 38160148 - 38160075
Alignment:
Q  353 tatcatgatacacgcttatgtataagccatttctaaaacaaaagataaa-taaagttaaattatttgtcgtataag 427  Q
    |||||||||||| ||||||||||||||||||||| | | |||||||||| ||||||| |||| ||| |||||||||    
T  38160148 tatcatgatacatgcttatgtataagccatttct-agagaaaagataaactaaagttcaattgttt-tcgtataag 38160075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 38578469 - 38578516
Alignment:
Q  371 tgtataagccatttctaaaacaaaagataa-ataaagttaaattattt 417  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||||||    
T  38578469 tgtataagctatttctataacaaaagataacataaagttaaattattt 38578516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 427
Target Start/End: Complemental strand, 27146436 - 27146320
Alignment:
Q  310 gtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagat-aaataaagtt 408  Q
    ||||||||||| |||||| |||| | ||||||| ||| | || ||||||||||  || |||||||||||  ||||||| | |||||||| ||||||| ||    
T  27146436 gtttggataaatagctta-tttgcagcttatagcataagtacatatcatgataagcgtttatgtataaggtatttctacagcaaaagataaaataaattt 27146338  T
Q  409 aaattatttgtcgtataag 427  Q
    |||||| || |||||||||    
T  27146337 aaattagtt-tcgtataag 27146320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 410
Target Start/End: Complemental strand, 172709 - 172665
Alignment:
Q  367 cttatgtataagccatttctaaaacaaaagataa-ataaagttaa 410  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||||    
T  172709 cttatgtataagctatttctataacaaaagataacataaagttaa 172665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 1510519 - 1510476
Alignment:
Q  298 aactaaggtcctgtttggataaacagcttaatttgtaacttatag 342  Q
    |||||||| |||||||||||||||||||| ||||||| |||||||    
T  1510519 aactaaggacctgtttggataaacagctt-atttgtatcttatag 1510476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 413
Target Start/End: Original strand, 4549803 - 4549851
Alignment:
Q  366 gcttatgtataagccatttctaaaacaaaagat-aaataaagttaaatt 413  Q
    ||||||||| |||| ||||||| |||||||||| |||||||||||||||    
T  4549803 gcttatgtacaagctatttctataacaaaagataaaataaagttaaatt 4549851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 417
Target Start/End: Original strand, 6976885 - 6976937
Alignment:
Q  366 gcttatgtataagccatttctaaaacaaaagataa-ataaagttaaattattt 417  Q
    |||||||||||||  ||||||| |||||||||||| ||||||||||| |||||    
T  6976885 gcttatgtataagatatttctataacaaaagataagataaagttaaactattt 6976937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 33527281 - 33527245
Alignment:
Q  365 cgcttatgtataagccatttctaaaacaaaagataaa 401  Q
    |||||||| |||||| |||||||||||||||||||||    
T  33527281 cgcttatgaataagctatttctaaaacaaaagataaa 33527245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 413
Target Start/End: Original strand, 17883947 - 17884053
Alignment:
Q  308 ctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagat-aaataaag 406  Q
    |||||| |||||||| |||||||| || ||||||| ||| | || ||||||| ||   ||| |||| ||||| ||||||| |||||||||| ||||||||    
T  17883947 ctgtttcgataaacaacttaatttttagcttatagcataaggacttatcatggtaagtgctcatgtgtaagctatttctataacaaaagataaaataaag 17884046  T
Q  407 ttaaatt 413  Q
    |||||||    
T  17884047 ttaaatt 17884053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 378
Target Start/End: Original strand, 50298402 - 50298480
Alignment:
Q  300 ctaaggtcctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataag 378  Q
    |||||| | |||||||||||||| ||||||||| | ||||||| |||  ||| |||||||||| | |||||||||||||    
T  50298402 ctaaggccatgtttggataaacaacttaatttgaagcttatagcataaacacttatcatgataaatgcttatgtataag 50298480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 44138442 - 44138544
Alignment:
Q  311 tttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagat-aaataaagtta 409  Q
    ||||||||||||||||| |||| | ||| ||| | | |||| |||||||||||  ||||||||||||||  |||||| | || ||||| |||||||||||    
T  44138442 tttggataaacagctta-tttgcagcttttagtacaagcacttatcatgatacttgcttatgtataagctgtttctatagcagaagataaaataaagtta 44138540  T
Q  410 aatt 413  Q
    ||||    
T  44138541 aatt 44138544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 413
Target Start/End: Complemental strand, 54392955 - 54392904
Alignment:
Q  362 acacgcttatgtataagccatttctaaaacaaaagataaataaagttaaatt 413  Q
    |||| ||||||||||||| ||||||| || |||| |||||||||||||||||    
T  54392955 acacacttatgtataagctatttctataataaaaaataaataaagttaaatt 54392904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 417
Target Start/End: Original strand, 24160927 - 24160979
Alignment:
Q  366 gcttatgtataagccatttctaaaacaaaagat-aaataaagttaaattattt 417  Q
    |||||||||||||| ||||||| |||||| ||| |||| ||||||||||||||    
T  24160927 gcttatgtataagctatttctataacaaaggataaaatcaagttaaattattt 24160979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 401
Target Start/End: Complemental strand, 42641815 - 42641731
Alignment:
Q  317 taaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagataaa 401  Q
    |||||||||||||||| | |||||   ||| |||| ||||||||||   | |||||||||||| ||||| | |||||||||||||    
T  42641815 taaacagcttaatttgcagcttattacataagcacttatcatgataagtgtttatgtataagctatttccataacaaaagataaa 42641731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 384
Target Start/End: Original strand, 7612329 - 7612414
Alignment:
Q  299 actaaggtcctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccattt 384  Q
    |||||||||||||||  ||||||| ||||||||| | ||||||| ||| |||| ||||||||||  | | ||||||||||| ||||    
T  7612329 actaaggtcctgtttcaataaacaacttaatttgcagcttatagcataagcacttatcatgataagctcatatgtataagctattt 7612414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 12110254 - 12110298
Alignment:
Q  307 cctgtttggataaacagcttaatttgtaacttatagaatatgcac 351  Q
    ||||||| |||||||||||||||||| ||||||||| ||| ||||    
T  12110254 cctgtttcgataaacagcttaatttgcaacttatagcataagcac 12110298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 427
Target Start/End: Complemental strand, 43250870 - 43250751
Alignment:
Q  308 ctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagat-aaataaag 406  Q
    ||||||||||||||| ||| ||||| | || ||||  || |||| || |||||||  |  |||||||||||| || |||| |||||||||| ||||||||    
T  43250870 ctgtttggataaacaactttatttgcagctgatagcttaagcacttaccatgataagcctttatgtataagctatgtctagaacaaaagataaaataaag 43250771  T
Q  407 ttaaattatttgtcgtataag 427  Q
    || |||| ||| |||||||||    
T  43250770 tt-aattgtttttcgtataag 43250751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 413
Target Start/End: Original strand, 47795838 - 47795940
Alignment:
Q  309 tgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagataaataaagtt 408  Q
    ||||| ||||||||||||| |||| | ||||||| ||| || | ||||||||||  | ||||||||||| | ||||||| | |||||| ||||| |||||    
T  47795838 tgtttagataaacagctta-tttgcagcttatagcataagcgcttatcatgataaccacttatgtataacctatttctatatcaaaag-taaattaagtt 47795935  T
Q  409 aaatt 413  Q
    |||||    
T  47795936 aaatt 47795940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 395
Target Start/End: Complemental strand, 15288803 - 15288710
Alignment:
Q  302 aaggtcctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaa 395  Q
    |||| ||||||||||| ||||||||||||| || ||||||| |||  | |  |||| ||||  ||||||||||||||| ||||||| |||||||    
T  15288803 aaggccctgtttggattaacagcttaatttatagcttatagcataaactctcatcaagataagcgcttatgtataagctatttctataacaaaa 15288710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 340
Target Start/End: Complemental strand, 39341252 - 39341215
Alignment:
Q  303 aggtcctgtttggataaacagcttaatttgtaacttat 340  Q
    |||||||||||||||||||||||||||||||| |||||    
T  39341252 aggtcctgtttggataaacagcttaatttgtagcttat 39341215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 413
Target Start/End: Original strand, 39567775 - 39567888
Alignment:
Q  301 taaggtcctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagat-a 399  Q
    ||||| || |||||||||||||||||||||   | ||||| | ||| || | ||||||||||  | ||| ||||||||  ||||||| |||||||||| |    
T  39567775 taaggcccggtttggataaacagcttaattcacagcttattgcataagcgcttatcatgataagcacttgtgtataagatatttctataacaaaagataa 39567874  T
Q  400 aataaagttaaatt 413  Q
    ||||||||||||||    
T  39567875 aataaagttaaatt 39567888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 8017359 - 8017423
Alignment:
Q  353 tatcatgatacacgcttatgtataagccatttctaaaacaaaagat-aaataaagttaaattattt 417  Q
    ||||||||||||||||||||||| ||| |||||| | ||||| ||| ||| |||||||||||||||    
T  8017359 tatcatgatacacgcttatgtatcagctatttct-atacaaaggataaaacaaagttaaattattt 8017423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 401
Target Start/End: Original strand, 9833042 - 9833127
Alignment:
Q  316 ataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagataaa 401  Q
    ||||||| ||||||||  | ||||||| ||| |||  |||||||||| || ||||||||||| | ||||| | |||||||||||||    
T  9833042 ataaacaacttaatttacagcttatagcataagcatttatcatgataaacacttatgtataatctatttccataacaaaagataaa 9833127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 328
Target Start/End: Complemental strand, 44458518 - 44458489
Alignment:
Q  299 actaaggtcctgtttggataaacagcttaa 328  Q
    ||||||||||||||||||||||||||||||    
T  44458518 actaaggtcctgtttggataaacagcttaa 44458489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 412
Target Start/End: Original strand, 264244 - 264355
Alignment:
Q  301 taaggtcctgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagat-a 399  Q
    ||||| ||||||||||| ||||||| |||||| | ||||||| | | |  | ||||||||||   |||||| ||||||| ||||||||| |||||||| |    
T  264244 taaggccctgtttggattaacagct-aatttgcagcttatagcacaagtgcttatcatgataagtgcttatatataagctatttctaaagcaaaagataa 264342  T
Q  400 aataaagttaaat 412  Q
    |||||||||||||    
T  264343 aataaagttaaat 264355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 427
Target Start/End: Complemental strand, 9093702 - 9093628
Alignment:
Q  353 tatcatgatacacgcttatgtataagccatttctaaaacaaaagat-aaataaagttaaattatttgtcgtataag 427  Q
    ||||||||||  |||||||| |||||| ||||||| | |||||||| ||||||||||||||| ||| |||||||||    
T  9093702 tatcatgataagcgcttatggataagctatttctatatcaaaagataaaataaagttaaattgttt-tcgtataag 9093628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 417
Target Start/End: Complemental strand, 32206210 - 32206101
Alignment:
Q  309 tgtttggataaacagcttaatttgtaacttatagaatatgcacctatcatgatacacgcttatgtataagccatttctaaaacaaaagat-aaataaagt 407  Q
    |||||| ||||||| | |||||||||   ||||| ||| || | ||||||||||  | ||||||| ||||| || ||||  ||||||||| |||||||||    
T  32206210 tgtttgaataaacaacataatttgtaggatatagcataagcgcttatcatgataagcacttatgtgtaagctatctctatgacaaaagatgaaataaagt 32206111  T
Q  408 taaattattt 417  Q
    ||||||||||    
T  32206110 taaattattt 32206101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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