View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_high_16 (Length: 433)
Name: NF5706_high_16
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Complemental strand, 29578106 - 29577703
Alignment:
| Q |
13 |
aatatgatgagggaaagctaagatatcattgccttcattaaattatttggttgtggcctaaacgcaaactatagcttataataagggttatgacatataa |
112 |
Q |
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| T |
29578106 |
aatatgatgagggaaagctaagatatcattgccttcattaaattatttggttgtggcctaaacgcaaactatagcttataataagggttatgacatataa |
29578007 |
T |
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| Q |
113 |
tataagagaatatttaaagtgaagattacaagcatagtaaggtataacgtgtcaataaatggttggttagatgagatatatattaacttgtgaggttgga |
212 |
Q |
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| T |
29578006 |
tataagagaatatttaaagtgaagattacaagcatagtaaggtataacgtgtcaataaatggttggttagatgagatatatattaacttgtgaggttgga |
29577907 |
T |
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| Q |
213 |
ctttacttgtttggtggaagatttatttctctttcgccaacactttagaagttttgctttcttaagactttatcttgaacaaaaataatcaaacctcctt |
312 |
Q |
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| T |
29577906 |
ctttacttgtttggtggaagatttatttctctttcgccaacactttagaag--ttgctttcttaagactttatcttgcacaaaaataatcaaacctcctt |
29577809 |
T |
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| Q |
313 |
aattaacttgatatatttgttatttttaatgaaaaatgtgactaatccttatgttccttcattcaaaccaccatatcatcttattaacttgatgtattgt |
412 |
Q |
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| T |
29577808 |
aattaacttgatgtatttgttatttttaatgaaaaatgtgactaatccttatgttccttcattcaaaccaccatatcatcttattaacttgatgtattgt |
29577709 |
T |
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| Q |
413 |
tcaaag |
418 |
Q |
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|||||| |
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| T |
29577708 |
tcaaag |
29577703 |
T |
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