View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_high_18 (Length: 408)
Name: NF5706_high_18
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 37739884 - 37739475
Alignment:
| Q |
1 |
atgaatgttatgtactttgttgtatttgtattag----tgtgtgtgagagtgaaatgcattaaaaatgtgatacatgccacg-------agtctctcaac |
89 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37739884 |
atgattgttatgtactttgttgtatttgtattagcgtgtgtgtgtgagagtgaaatgcattaaaaatgtgatacatgccacggcccacgagtctctcaac |
37739785 |
T |
|
| Q |
90 |
ctaatttatactatatttcgatgattgaatgtgtcgtccatatttggtataaacgataaaactctcatctatttttcctaaatatattcaaataatttaa |
189 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37739784 |
ctaatttatactatatttcgatgattgactgtgtcgtccatatttggtataaacgataaaactctcatctatttttcctaaatatattcaaataatttaa |
37739685 |
T |
|
| Q |
190 |
ttgattgtgtagaataattttttaaaaaacttaagttaagttttgttttatggtagacaaaactgtaaatcgaaatagttnnnnnnngatttccagtttt |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
37739684 |
ttgattgtgtagaataattttttaaaaaacttaagttaagttttgtattatggtatacaaaactgtaaatcgaaatagttaaaaaaagatttccagtttt |
37739585 |
T |
|
| Q |
290 |
taaccaggttaaagtgcatatttcttcaagagcgtgtg-------ctactatttcgttctcaataattagattggatgatactaataaacaaatatggat |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37739584 |
taaccaggttaaagtgcatatttcttcaagagcgtgtgctactgcctactatttcgttctcaataattagattggatgatactaataaacaaatatggat |
37739485 |
T |
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| Q |
383 |
caggtgaaaa |
392 |
Q |
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|||||||||| |
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| T |
37739484 |
caggtgaaaa |
37739475 |
T |
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