View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_high_19 (Length: 406)
Name: NF5706_high_19
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 5215009 - 5214623
Alignment:
| Q |
1 |
cacaactgtagagtctaattttttgaggtgcctaaggtttatttaaggggttaacttcttctgacatatgtttttccttacgcacgcaccgatcaaagaa |
100 |
Q |
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| T |
5215009 |
cacaactatagagtctaatttcttgaggtgcctaaggtctatttaaggggttaacttcttctgacatatgttttaccttacgcac----cgatcaaagaa |
5214914 |
T |
|
| Q |
101 |
ttgaacttcatggccaaatggtnnnnnnnctcaaatatgtaccacttgtgttatactatgttggtatttgtattttatttttatcgacacgtagatgtaa |
200 |
Q |
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| T |
5214913 |
ttgaacttcatggctaaatggtaaaaaaactcaaatatgtaa-acttgtgttatactatgttggcatttgtattttatttttatcgacacgtagatgtaa |
5214815 |
T |
|
| Q |
201 |
cataaaagcatgctaatctttctagttaaaggaaaacgaacatgttattgtgattgtgtaaccttgttttagtttgttgttggaaatacaacgtccaaga |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5214814 |
cataac----tgctaatctttctagttaaaggaaaacgaacatgttattgtgattgtgtaaccttgttttagtttgttgttggaaatacaacgtccaaga |
5214719 |
T |
|
| Q |
301 |
ttttgaacaaatttgagaattttaatttcctcttctgtggacttaatatttcaaatacgtacaaaatagcatatgtttaatgtaatcattgttcat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5214718 |
ttttgaacaaatttgagaattttaatttcctcttctgtggacttaatatttcaaatacgtacaaaatagcatatgtttaatgtaatcattgttcat |
5214623 |
T |
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