View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_high_20 (Length: 388)
Name: NF5706_high_20
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 60 - 239
Target Start/End: Complemental strand, 43226374 - 43226208
Alignment:
| Q |
60 |
ttttcctctgttttgcgcagagctgttattctctcaggaaacactgttctttagaataagtattaagaaaactatgagtgccatgttcggtctttgtttt |
159 |
Q |
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| T |
43226374 |
ttttcctctgttttgcgcagagctgttattctctcataaaacactgttctt-------------aagaaaactatgagtgccatgttcggtctttgtttt |
43226288 |
T |
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| Q |
160 |
gaataagcggggtagcttcttctccatcaaaagaggtaattcgagagttgttatgtttttggtcaaaaccaaaggaatat |
239 |
Q |
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| T |
43226287 |
gaataagcggggtagcttcttctccatcaaaagaggtaatttgagagttgttatatttttggtcaaaaccaaaggaatat |
43226208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 99 - 207
Target Start/End: Complemental strand, 43242116 - 43242008
Alignment:
| Q |
99 |
aacactgttctttagaataagtattaagaaaactatgagtgccatgttcggtctttgttttgaataagcggggtagcttcttctccatcaaaagaggtaa |
198 |
Q |
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| T |
43242116 |
aacattgttctttagaataagtaataagaaaattatggatgtcatgtccggtctttgttttgaataagcgggatagcttcttctgcatcaaaagaggtaa |
43242017 |
T |
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| Q |
199 |
ttcgagagt |
207 |
Q |
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| T |
43242016 |
tttgagagt |
43242008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 297
Target Start/End: Complemental strand, 43226124 - 43226065
Alignment:
| Q |
238 |
atccttacctttaaattagtggtttcataatttgatttagatacgaaacacttgtactag |
297 |
Q |
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| T |
43226124 |
atccttacctttaatttagtgctttcataatttgatttagatacgaaacacttttactag |
43226065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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