View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5706_high_22 (Length: 376)
Name: NF5706_high_22
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 42395544 - 42395181
Alignment:
| Q |
1 |
aggataatacaagaaggtgggagagggaacattttcaagaatatttttggtatgcaagaaggagagaaagtgttgaaggcttcacaatgttacttataca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42395544 |
aggataatacaagaaggtgggagagggaacattttcaagaatatttttggtatgcaagaaggagagaaagtgttgaaggcttcacaatgttacttataca |
42395445 |
T |
|
| Q |
101 |
caacagctggtcctattgctggtgttcttttcatctctacccaaaaagttgcattttgtagtgaaagaccaataaccttctcttctgcatcaacgggaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42395444 |
caacagctggtcctattgctggtgttcttttcatctccacccaaaaagttgcattttgtagtgaaagaccaataaccttctcttctgcatcaacgggaga |
42395345 |
T |
|
| Q |
201 |
gtcgcgcaagataccgtacaaggtacgtaattattaagagtcccacattgaatagatatataacaaatagtaatagagcttatgagtggagttgatttgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42395344 |
gtcgcgcaagataccgtacaaggtacgtaattattaagagtcccacattgaatagttatataacaaatagtaatagagcttatgagtggagttgatttgc |
42395245 |
T |
|
| Q |
301 |
actt----tataatttggttttttacgattgatttaggtttaactcaaattttaagtgtagtta |
360 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42395244 |
acttaatatataatttggttttttacgattgatttaggttcaactcaaattttaagtgtagtta |
42395181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 29295988 - 29296167
Alignment:
| Q |
10 |
caagaaggtgggagagggaacattttcaagaatatttttggtatgcaagaaggagagaaagtgttgaaggcttcacaatgttacttatacacaacagctg |
109 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||||||| |||||||| | ||||||| | ||||| ||||| || || || ||||| || ||||||| |
|
|
| T |
29295988 |
caagaaggtggaagaggtaacattttcaagcatatttttgggatgcaagaggaagagaaactcttgaaagcttctcagtgctatttatataccacagctg |
29296087 |
T |
|
| Q |
110 |
gtcctattgctggtgttcttttcatctctacccaaaaagttgcattttgtagtgaaagaccaataaccttctcttctgca |
189 |
Q |
| |
|
||||||||||||| |||| || ||||| ||| |||||||||||| || |||||||| || | || ||||||||||||| |
|
|
| T |
29296088 |
gtcctattgctggaattctatttatctccaccgtaaaagttgcattctgcagtgaaaggcctacaagcttctcttctgca |
29296167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University