View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_high_24 (Length: 360)
Name: NF5706_high_24
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 192 - 342
Target Start/End: Complemental strand, 470547 - 470397
Alignment:
| Q |
192 |
acccactcaacaccttattgatgcttctctcgcaattgccaccagatctgaacctcctcttccagatgtatccaacaaccaaattcaaccattttcttca |
291 |
Q |
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| T |
470547 |
acccactcaacacctcattgatgcttctctcgcaattgccaccagatctgaacctcctcttccagatgtatccaacaaccaaattcaaccattttcttca |
470448 |
T |
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| Q |
292 |
acttcaaccaccgtcaccgcggttgcaaatcctccaaaacgatccaccaag |
342 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
470447 |
acttcaaccaccgtcaccgctgttgcaaatcctccaaaacgatccaccaag |
470397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 470721 - 470621
Alignment:
| Q |
18 |
acaacaagaatcatcctcaccttcaaattctcatcatcagaaacttgtggtcccttttgatggaaggccatcacctttcattatgggctccatctccaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
470721 |
acaacaagaatcatcctcaccttcaaattctcatcatcagcagcttgtggtcccttttgatggaaggccatcacctttcattatgggctccatctccaat |
470622 |
T |
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| Q |
118 |
a |
118 |
Q |
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| |
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| T |
470621 |
a |
470621 |
T |
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