View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_high_31 (Length: 318)
Name: NF5706_high_31
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_high_31 |
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| [»] scaffold1738 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 61 - 302
Target Start/End: Original strand, 8416587 - 8416828
Alignment:
| Q |
61 |
gaaattatatttgcaaaatcagatctctgttggctatctttacatttgctttctatgtcaaagtactaacaatgaatatacataaaataatgtgaattag |
160 |
Q |
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| T |
8416587 |
gaaattatatttgcaaaatcagatctctgttggctatctttacatttgctttctatgtcaaagtactaacaatgaatatacataaaataatgtgaattag |
8416686 |
T |
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| Q |
161 |
gatccatacatgaaagaacaaaataatgtgttaatattgaagattatctcagaatagcttgctggcaaattcatctatgtcaacaccttcaatgcgacaa |
260 |
Q |
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| T |
8416687 |
gatctatacatgaaagaacaaaataatgtgttaatattgaagattatctcagaatagcttgctggaaaattcatctatgtcaacaccttcgatgcgacaa |
8416786 |
T |
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| Q |
261 |
gaagctgattttgtggcacgttccctcagctctgatacattt |
302 |
Q |
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| T |
8416787 |
gaagctgattttgtggcacgttccctcagctctgatacattt |
8416828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 61 - 299
Target Start/End: Complemental strand, 8376512 - 8376265
Alignment:
| Q |
61 |
gaaattatatttgcaaaatcagatctctgttggctatctttacatttgctttctatgtcaaagtactaacaatgaatatacataaaataat--------g |
152 |
Q |
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| T |
8376512 |
gaaattatatatgcaaaatcagatctatgttgtctatatttacatttgctttctatgtcaaaggactaacaatgtttatacataaaataataaaagaatg |
8376413 |
T |
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| Q |
153 |
tgaattaggatccatacatgaaagaacaaaa-taatgtgttaatattgaagattatctcagaatagcttgctggcaaattcatctatgtcaacaccttca |
251 |
Q |
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| T |
8376412 |
tgaataggaatctatacatgaaagaacaaaaataatgtgttagtcttgaagattatctcagaatagcttgctggcaaattcatcaatttcgataccttcc |
8376313 |
T |
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| Q |
252 |
atgcgacaagaagctgattttgtggcacgttccctcagctctgataca |
299 |
Q |
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| T |
8376312 |
atgcgacaagaagctgattttgaggcaagttccctcagctctgataca |
8376265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 205 - 294
Target Start/End: Original strand, 8411647 - 8411736
Alignment:
| Q |
205 |
tatctcagaatagcttgctggcaaattcatctatgtcaacaccttcaatgcgacaagaagctgattttgtggcacgttccctcagctctg |
294 |
Q |
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| T |
8411647 |
tatctcagaagagcttgctggcaaattcatctatttcgatactttccatgcgacaagaagctgattttgaggcaagttccctcagctctg |
8411736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 205 - 294
Target Start/End: Original strand, 8433745 - 8433834
Alignment:
| Q |
205 |
tatctcagaatagcttgctggcaaattcatctatgtcaacaccttcaatgcgacaagaagctgattttgtggcacgttccctcagctctg |
294 |
Q |
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| T |
8433745 |
tatctcagaagagcttgctggcaaattcatctatttcgatactttccatgcgacaagaagctgattttgaggcaagttccctcagctctg |
8433834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 8396031 - 8395951
Alignment:
| Q |
219 |
ttgctggcaaattcatctatgtcaacaccttcaatgcgacaagaagctgattttgtggcacgttccctcagctctgataca |
299 |
Q |
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| T |
8396031 |
ttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgataca |
8395951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 8405541 - 8405621
Alignment:
| Q |
219 |
ttgctggcaaattcatctatgtcaacaccttcaatgcgacaagaagctgattttgtggcacgttccctcagctctgataca |
299 |
Q |
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| T |
8405541 |
ttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctcagataca |
8405621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 8430812 - 8430892
Alignment:
| Q |
219 |
ttgctggcaaattcatctatgtcaacaccttcaatgcgacaagaagctgattttgtggcacgttccctcagctctgataca |
299 |
Q |
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| T |
8430812 |
ttgctggaaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttcccttagctctgataca |
8430892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1738 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold1738
Description:
Target: scaffold1738; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 61 - 299
Target Start/End: Complemental strand, 343 - 97
Alignment:
| Q |
61 |
gaaattatatttgcaaaatcagatctctgttggctatctttacatttgctttctatgtcaaagtactaacaatgaatatacataaaataat--------g |
152 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||| | |
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| T |
343 |
gaaattatatttgcaaaatcagatctctgttggctatatttacatttgctttctatgtcaaaggactaacaatgtttatacataaaataataaaagaatg |
244 |
T |
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| Q |
153 |
tgaattaggatccatacatgaaagaacaaaataatgtgttaatattgaagattatctcagaatagcttgctggcaaattcatctatgtcaacaccttcaa |
252 |
Q |
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|||||| ||||| ||||||||||||||||| |||| ||||| | || ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
243 |
tgaattgggatctatacatgaaagaacaaagtaatatgttagtcttaaagattatctcagaataacttgctggcaaattcatctatgtcaacaccttcga |
144 |
T |
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| Q |
253 |
tgcgacaagaagctgattttgtggcacgttccctcagctctgataca |
299 |
Q |
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| T |
143 |
tgcgacaagaagctgattttgatgcaagttccctcagctctgataca |
97 |
T |
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