View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_high_35 (Length: 289)
Name: NF5706_high_35
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 8652498 - 8652761
Alignment:
| Q |
11 |
caaaggttgcaaagtagtaccattttaagagccattttggataaacttctacaaaaacacttatctgaagagaaatattaaaaccaaatttcacaataac |
110 |
Q |
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| T |
8652498 |
caaaggttgcaaagtagtaccaatttaagagccattttggataaacttctccaaaaacacttatctgaagagaaatattaaaactaaatttcacaataac |
8652597 |
T |
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| Q |
111 |
tatgagtttccaatacaatagcttctcatataaattaaaactagcctttatatctcaactttttcataagctctatcatttaatttttcaataaacacct |
210 |
Q |
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| T |
8652598 |
tatgagtttccaatacaatagcttctcatataaattaaaactagcctttatatctcaactttttcataagctctatcatttaacttttcaataaacacct |
8652697 |
T |
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| Q |
211 |
ggaaacttataagcatttttcaccataaatttgttttaactaacaagctcccataaatcaaaag |
274 |
Q |
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| T |
8652698 |
ggaaacttataagcatttttcaccataaatttgttttaacaaacaagctcccataaatcaaaag |
8652761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 9173779 - 9173510
Alignment:
| Q |
5 |
aagtagcaaaggttgcaaagtagtaccattttaagagccattttggataaacttctacaaaaacacttatctgaagagaaatattaaaaccaaatttcac |
104 |
Q |
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| T |
9173779 |
aagtaccaaaggttgtgaagtagcaccaatttaagagccattttggataaacttcttcaagaacacttatctaaagagaaatactaaaacaaaatctcaa |
9173680 |
T |
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| Q |
105 |
aataactatgagtttccaatacaatagcttctcatataaattaaaactagcctttatatctcaactttttcataagctctatcatttaatttttcaataa |
204 |
Q |
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| T |
9173679 |
cataaccatgagtttttaatacaatagcttctcatataaattaaaactagcctctatatctcaactttttcataagttctctcatttaacttttcaataa |
9173580 |
T |
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| Q |
205 |
acacctggaaacttataagcatttttcaccataaatttgttttaactaacaagctcccataaatcaaaag |
274 |
Q |
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| T |
9173579 |
gcgctggtaaacttataagcggttttccccataaatttattttaactaacaagctcccataaattaaaag |
9173510 |
T |
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