View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_high_40 (Length: 264)
Name: NF5706_high_40
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 31851347 - 31851169
Alignment:
| Q |
1 |
tttgataaatctgctgagaaggtggatgagatatttaagagagatgaggaattctttttcccttatgatgttgaagatgagagcaaggaggagcgtggtc |
100 |
Q |
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| T |
31851347 |
tttgataaatctgctgagaaggtggatgagatatttaagagagatgaggaattctttttcccttatgatgttgaagatgagagcaaggaggagcatggtc |
31851248 |
T |
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| Q |
101 |
gtgctgatgagtgaatagggttttaaaagggtggtgacaatggaggttatgtaaattaggtcatggtatgtgtatgcaa |
179 |
Q |
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| T |
31851247 |
gtgctgatgagtgaatagggttttaaaagggtggtgacaatggaggttatgtaaattaggtcatggtatgtgtatgcaa |
31851169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 31851138 - 31851070
Alignment:
| Q |
180 |
tgttgcttgttatggcaacatagctatatgcgttgtatcatgagagttacattacatctaagttaatgt |
248 |
Q |
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| T |
31851138 |
tgttgcttgttatggcaacataactatatgtgttgtatcatgagagttacattacatctaagttaatgt |
31851070 |
T |
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