View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5706_high_41 (Length: 259)

Name: NF5706_high_41
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5706_high_41
NF5706_high_41
[»] chr1 (2 HSPs)
chr1 (105-216)||(45413926-45414033)
chr1 (216-249)||(44404659-44404692)
[»] chr3 (2 HSPs)
chr3 (211-249)||(50736607-50736645)
chr3 (211-249)||(50776210-50776248)
[»] chr6 (3 HSPs)
chr6 (216-249)||(35039094-35039127)
chr6 (216-248)||(18310008-18310040)
chr6 (216-248)||(17936981-17937013)
[»] chr5 (3 HSPs)
chr5 (216-249)||(20337170-20337203)
chr5 (216-249)||(20745702-20745735)
chr5 (216-249)||(17994796-17994829)
[»] chr4 (3 HSPs)
chr4 (216-249)||(21351353-21351386)
chr4 (216-249)||(22118268-22118301)
chr4 (216-249)||(36518420-36518453)
[»] chr2 (1 HSPs)
chr2 (216-249)||(5250322-5250355)
[»] chr8 (1 HSPs)
chr8 (183-219)||(69115-69151)
[»] chr7 (2 HSPs)
chr7 (221-249)||(17470775-17470803)
chr7 (221-249)||(17582411-17582439)


Alignment Details
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 45413926 - 45414033
Alignment:
Q  105 aataatgctcttgaatatatttattgttcagcgagataggagtatatccggtctcatatattaggnnnnnnnnttccttttttaggtttatttaataatt 204  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||        |   |||||||||||||||||||||||    
T  45413926 aataatgctcttgaatat--ttatttttcagcgagataggagtatatccggtctcatatattaggaaaaaaaat--attttttaggtttatttaataatt 45414021  T
Q  205 aatatattttgt 216  Q
    ||||||||||||    
T  45414022 aatatattttgt 45414033  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 44404659 - 44404692
Alignment:
Q  216 tctacttactatattataaaattaaatgcctatg 249  Q
    ||||||||||||||||||||||||||||||||||    
T  44404659 tctacttactatattataaaattaaatgcctatg 44404692  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 50736607 - 50736645
Alignment:
Q  211 ttttgtctacttactatattataaaattaaatgcctatg 249  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  50736607 ttttgtctacttactatattataaaattaaatgtctatg 50736645  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 50776248 - 50776210
Alignment:
Q  211 ttttgtctacttactatattataaaattaaatgcctatg 249  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  50776248 ttttgtctacttactatattataaaattaaatgtctatg 50776210  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 35039094 - 35039127
Alignment:
Q  216 tctacttactatattataaaattaaatgcctatg 249  Q
    ||||||||||||||||||||||||||||||||||    
T  35039094 tctacttactatattataaaattaaatgcctatg 35039127  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 18310008 - 18310040
Alignment:
Q  216 tctacttactatattataaaattaaatgcctat 248  Q
    |||||||||||||||||||||||||||||||||    
T  18310008 tctacttactatattataaaattaaatgcctat 18310040  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 17936981 - 17937013
Alignment:
Q  216 tctacttactatattataaaattaaatgcctat 248  Q
    ||||||| |||||||||||||||||||||||||    
T  17936981 tctacttgctatattataaaattaaatgcctat 17937013  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 20337170 - 20337203
Alignment:
Q  216 tctacttactatattataaaattaaatgcctatg 249  Q
    ||||||||||||||||||||||||||||||||||    
T  20337170 tctacttactatattataaaattaaatgcctatg 20337203  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 20745702 - 20745735
Alignment:
Q  216 tctacttactatattataaaattaaatgcctatg 249  Q
    ||||||||||||||||||||||||||||||||||    
T  20745702 tctacttactatattataaaattaaatgcctatg 20745735  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 17994796 - 17994829
Alignment:
Q  216 tctacttactatattataaaattaaatgcctatg 249  Q
    |||||||||||||||||||| |||||||||||||    
T  17994796 tctacttactatattataaagttaaatgcctatg 17994829  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 21351353 - 21351386
Alignment:
Q  216 tctacttactatattataaaattaaatgcctatg 249  Q
    ||||||||||||||||||||||||||||||||||    
T  21351353 tctacttactatattataaaattaaatgcctatg 21351386  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 22118301 - 22118268
Alignment:
Q  216 tctacttactatattataaaattaaatgcctatg 249  Q
    |||||||||||||||||||||||||||| |||||    
T  22118301 tctacttactatattataaaattaaatgtctatg 22118268  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 36518453 - 36518420
Alignment:
Q  216 tctacttactatattataaaattaaatgcctatg 249  Q
    |||||||||||||||| |||||||||||||||||    
T  36518453 tctacttactatattacaaaattaaatgcctatg 36518420  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 5250322 - 5250355
Alignment:
Q  216 tctacttactatattataaaattaaatgcctatg 249  Q
    ||||||||||||||||||||||||||||||||||    
T  5250322 tctacttactatattataaaattaaatgcctatg 5250355  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 69151 - 69115
Alignment:
Q  183 tttttaggtttatttaataattaatatattttgtcta 219  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  69151 ttttaaggtttatttaataaataatatattttgtcta 69115  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 17470775 - 17470803
Alignment:
Q  221 ttactatattataaaattaaatgcctatg 249  Q
    |||||||||||||||||||||||||||||    
T  17470775 ttactatattataaaattaaatgcctatg 17470803  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 249
Target Start/End: Complemental strand, 17582439 - 17582411
Alignment:
Q  221 ttactatattataaaattaaatgcctatg 249  Q
    |||||||||||||||||||||||||||||    
T  17582439 ttactatattataaaattaaatgcctatg 17582411  T

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