View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5706_high_47 (Length: 250)

Name: NF5706_high_47
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5706_high_47
NF5706_high_47
[»] chr2 (3 HSPs)
chr2 (1-241)||(18803382-18803618)
chr2 (23-84)||(42167897-42167958)
chr2 (23-84)||(42289974-42290035)
[»] chr4 (6 HSPs)
chr4 (1-106)||(4600880-4600985)
chr4 (1-105)||(25039365-25039469)
chr4 (1-100)||(25018254-25018353)
chr4 (1-126)||(4625028-4625152)
chr4 (23-85)||(25047277-25047339)
chr4 (146-205)||(4625156-4625215)
[»] chr5 (1 HSPs)
chr5 (27-84)||(30360258-30360315)
[»] chr6 (1 HSPs)
chr6 (3-84)||(29405630-29405711)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 18803618 - 18803382
Alignment:
Q  1 tattacttggcaatatcctcgcccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcctatgaagatgtaaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18803618 tattacttggcaatatcctcgcccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcctatgaagatgtaaaaat 18803519  T
Q  101 ggttaacaccctgtactagacaaaaacttgcaaacaaatattagctagagattcataaattaaaatctttattagatgcttaattcttaaaaatcaatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    |||||||||||||    
T  18803518 ggttaacaccctgtactagacaaaaacttgcaaacaaatattagctagagattcataaattaaaatctttattggatgcttaa----taaaaatcaatga 18803423  T
Q  201 tgtaatatgtttcttgtaatttgggacgaagggagtattat 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18803422 tgtaatatgtttcttgtaatttgggacgaagggagtattat 18803382  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 42167897 - 42167958
Alignment:
Q  23 ccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcct 84  Q
    ||||||||| ||||||||||| ||||||  |||||||| | |||||||  ||||||||||||    
T  42167897 ccaagagattgagaatctgtaagcatctaaattcatattcctcatgatgccaacatcttcct 42167958  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 42290035 - 42289974
Alignment:
Q  23 ccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcct 84  Q
    ||||||||| ||||||||||| |||||   |||||||| |||||||||  ||||||||||||    
T  42290035 ccaagagatcgagaatctgtaggcatccaaattcatattcttcatgatgccaacatcttcct 42289974  T

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Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 4600880 - 4600985
Alignment:
Q  1 tattacttggcaatatcctcgcccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcctatgaagatgtaaaaat 100  Q
    ||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4600880 tattacttggcaatatccttggccaagatatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcctattaagatgtaaaaat 4600979  T
Q  101 ggttaa 106  Q
    ||||||    
T  4600980 ggttaa 4600985  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 25039365 - 25039469
Alignment:
Q  1 tattacttggcaatatcctcgcccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcctatgaagatgtaaaaat 100  Q
    |||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  25039365 tattacttggcaatattcttggccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcctcctattaagatgtaaaaat 25039464  T
Q  101 ggtta 105  Q
    |||||    
T  25039465 ggtta 25039469  T

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Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 25018254 - 25018353
Alignment:
Q  1 tattacttggcaatatcctcgcccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcctatgaagatgtaaaaat 100  Q
    |||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  25018254 tattacttggcaatattcttggccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcgacatcttcctattaagatgtaaaaat 25018353  T

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Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 4625028 - 4625152
Alignment:
Q  1 tattacttggcaatatcctcgcccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcctatgaagatgtaaaaat 100  Q
    |||||||||| | |||||| | |||||| ||||||||||||||||||||||||||||||| ||||||||||  ||||||||||| | ||||||||| |||    
T  4625028 tattacttggaactatccttggccaagatatggagaatctgtatgcatctgtattcatattcttcatgatttgaacatcttcctgttaagatgtaacaat 4625127  T
Q  101 ggttaacaccctgtactagacaaaaa 126  Q
    |||||||| | | |||||||||||||    
T  4625128 ggttaaca-catatactagacaaaaa 4625152  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 25047277 - 25047339
Alignment:
Q  23 ccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttccta 85  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||| |||||||||||||    
T  25047277 ccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttccta 25047339  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 4625156 - 4625215
Alignment:
Q  146 tagagattcataaattaaaatctttattagatgcttaattcttaaaaatcaatgatgtaa 205  Q
    |||||||||||||| |||||||| || | |||| | |||||||||| |||||||||||||    
T  4625156 tagagattcataaagtaaaatctataattgatgttgaattcttaaacatcaatgatgtaa 4625215  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 30360315 - 30360258
Alignment:
Q  27 gagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcct 84  Q
    |||||||| ||||| |||||||||  ||||||||||||||||||  ||||||||||||    
T  30360315 gagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 30360258  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 29405711 - 29405630
Alignment:
Q  3 ttacttggcaatatcctcgcccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcct 84  Q
    |||||||||||||| || | ||||||||| ||||||||||| |||||  | ||||| | |||||||||  | ||||||||||    
T  29405711 ttacttggcaatattcttgaccaagagattgagaatctgtaagcatccatgttcatgtccttcatgatctcgacatcttcct 29405630  T

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