View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_high_54 (Length: 239)
Name: NF5706_high_54
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_high_54 |
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Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 25151724 - 25151829
Alignment:
| Q |
128 |
ctagaaccaatataagcctaagtctgaataattgatcaactaaaaggacatttaatcattccatacataaaaatc-ataaaatttgtacttttctactag |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |
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| T |
25151724 |
ctagaaccaatataagcctaagtctgaataattgatcaactaaaaggacatttaatcattccatacatagaaatcaaaaaaatttgtacttttctactag |
25151823 |
T |
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| Q |
227 |
tgatta |
232 |
Q |
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|||||| |
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| T |
25151824 |
tgatta |
25151829 |
T |
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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 25157491 - 25157573
Alignment:
| Q |
128 |
ctagaaccaatataagcctaagtctgaataattgatcaactaaaaggacatttaatcattccatacataaaaatcataaaatt |
210 |
Q |
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| T |
25157491 |
ctagaaccaatataaacctaagtctgaataattgatcaactcaaaggatatttgatcattccatacatagaactcgtaaaatt |
25157573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 25146680 - 25146748
Alignment:
| Q |
139 |
ataagcctaagtctgaataattgatcaactaaaaggacatttaatcattccatacataaaaatcataaa |
207 |
Q |
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|||||||||||||||| ||||| |||| || |||||| |||||| |||| |||||||| |||||||||| |
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| T |
25146680 |
ataagcctaagtctgagtaatttatcacctgaaaggatatttaaccattacatacatagaaatcataaa |
25146748 |
T |
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