View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_high_63 (Length: 212)
Name: NF5706_high_63
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_high_63 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 26944196 - 26944393
Alignment:
| Q |
1 |
tagcctaaataggtgcacaaaactatatcaccaacaccatttataacactggcagcagctaaagcttttaagggtccccaggaatctttcataccaagac |
100 |
Q |
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| T |
26944196 |
tagcctaaataggtgcacaaaactatatcaccaacaccatttataacactggcagcagctaaagctttcaagggtccccaggaatctttcataccaagac |
26944295 |
T |
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| Q |
101 |
tgtatgatgtgaataccaaattaaagaatgaaattaataagctaatagttaccatattattcaaatcatacaaagcacgggttgagccttagtattat |
198 |
Q |
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| T |
26944296 |
tgtatgatgtgaataccaaattaaagaatgaaattaataagctaatagttaccgtattattcaaatcatacaaagcacgggttgagccttagtattat |
26944393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 26951932 - 26952029
Alignment:
| Q |
1 |
tagcctaaataggtgcacaaaactatatcaccaacaccatttataacactggcagcagctaaagcttttaagggtccccaggaatctttcataccaag |
98 |
Q |
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| T |
26951932 |
tagcctaaacagctgcataaaagtatatcaccaattccatttataacactggcagcagccaaagcctttaagggtccccatgaatctttcataccaag |
26952029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 26989193 - 26989281
Alignment:
| Q |
14 |
tgcacaaaactatatcaccaacaccatttataacactggcagcagctaaagcttttaagggtccccaggaatctttcataccaagactg |
102 |
Q |
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| T |
26989193 |
tgcacagaattatatcaccaattccatttataatactggcagcagccaaagccttcaagggtccccaagaatctttcataccaagactg |
26989281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 27003776 - 27003882
Alignment:
| Q |
1 |
tagcctaaataggtgcacaaaactatatcaccaacaccatttataacactggcagcagctaaagcttttaagggtccccaggaatctttcataccaagac |
100 |
Q |
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|||||||| || |||||| || ||||||||||| |||||||||| ||||||||| || ||||| || ||||||||||| ||||||||||||||||||| |
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| T |
27003776 |
tagcctaagtatctgcacagaattatatcaccaattccatttataatactggcagcggccaaagccttcaagggtccccaagaatctttcataccaagac |
27003875 |
T |
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| Q |
101 |
tgtatga |
107 |
Q |
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|| |||| |
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| T |
27003876 |
tgcatga |
27003882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 26978468 - 26978367
Alignment:
| Q |
1 |
tagcctaaataggtgcacaaaactatatcaccaacaccatttataacactggcagcagctaaagcttttaagggtccccaggaatctttcataccaagac |
100 |
Q |
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||||||||||| |||||| || || ||||||| |||||||||| ||| ||| |||| ||||| || | ||||||||| || |||||||||||||||| |
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| T |
26978468 |
tagcctaaatatctgcacagaatgatgtcaccaattccatttataatactagcaacagccaaagccttcaggggtccccaagagtctttcataccaagac |
26978369 |
T |
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| Q |
101 |
tg |
102 |
Q |
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|| |
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| T |
26978368 |
tg |
26978367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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