View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_high_9 (Length: 504)
Name: NF5706_high_9
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 17 - 501
Target Start/End: Complemental strand, 36172104 - 36171622
Alignment:
| Q |
17 |
atgtttaagcgtcaatatcgtgtctagtatccatatgtgtcaaccacnnnnnnnnctt---aaattactaccggtgtcatgtctgatctggtgtatgtgt |
113 |
Q |
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|||||||||||||| | ||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
36172104 |
atgtttaagcgtcagtgtcgtgtctagtatccgtatgtgtcaaccacttttttttcttcttaaattactaccggtgtcatgtctgatctggtgtatgat- |
36172006 |
T |
|
| Q |
114 |
aagactagtggttcatgttgttggaaacaactggcagggtactatgcattcttcttcactaatcgtcaacatatgcatttattaattgttgagtgaatca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36172005 |
----ctagtggttcatgttgttggaaacaactggcagggtactatgcattcttcttcactaatcgtcaacatatgcatttattaattgttgagtgaatca |
36171910 |
T |
|
| Q |
214 |
tactccaatttattaatatgcagtgttttaagcgacgatattgagaagcagaataatgactccacagtttcaagcgtcgaagatgttctaatcatcatca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36171909 |
tactccaatttattaatatgcagtgttttaagcgacgatattgagaagcagaataatgactccacagtttcaagcgtcgaagatgttctaatcatcatca |
36171810 |
T |
|
| Q |
314 |
agtctgattatgacaatgattactttgttacaggtacctcgttttatctttcaatttccgtcttagcagatattttgtcagaaggttgctcttactctct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36171809 |
agtctgattatgacaatgattactttgttacaggtacctcgttttatctttcaatttccgtcttagcagatattttgtcagaaggttgctcttactctct |
36171710 |
T |
|
| Q |
414 |
aatttagcatgtttttgctattagtttttattcaatatcagcttcttttctggcatgttatctaaaattgtctcattttcttcgacat |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || ||||| |
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| T |
36171709 |
aatttagcatgtttttgctattagtttttattcaatatcagcttcttttctggcatgttatctaaagttgtctcactttgtttgacat |
36171622 |
T |
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