View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_low_1 (Length: 862)
Name: NF5706_low_1
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 604; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 163 - 842
Target Start/End: Original strand, 30519341 - 30520014
Alignment:
| Q |
163 |
actaaatagtaaggaactacactatacatatatatgtctttcaaatgtatacattgcagcttatatatgtttgtatactatttctatttctattttggta |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30519341 |
actaaatagtaaggaactacactatacatatatatgtctttcaaatgtatacattgcagcttat----gtttgtatactatttctatttctattttggta |
30519436 |
T |
|
| Q |
263 |
aggtgtcttcaatcttttatcttacttcctagatttttgtttcacagcagttttctttggtgtgtgtgtaaccatatcaaccaagaaaaagttgcataaa |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
30519437 |
aggtgtcttcaatcttttatcttacttcctagatttttgtttcacagcagttttctttggtgt--gtgtaaccatatgaaccaagaaaaagttgcataaa |
30519534 |
T |
|
| Q |
363 |
ataggcactaatttgaatgatcactatcaaaattttaaattgcagttgcaaccgagattcttgatattgtaaacaaatgttgcaaaattgcaaacgcaat |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30519535 |
ataggcactaatttgaatgatcactatcaaaattttaaattgcagttgcaaccgagattcttgatattgtaaacaaatgttgcaaaattgcaaacgcaat |
30519634 |
T |
|
| Q |
463 |
tacattgcaaataacatctgcaatttacgttgcaagcgtatgattttaaccacatgacttgatgctgtcacaaatattgtcgttgtcgcggtggttcaca |
562 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30519635 |
tacattgcaaataacatctgcaatttacgttacaagcgtatgattttaaccacatgacttgatgctgtcacaaatattgtcgttgtcacggtggttcaca |
30519734 |
T |
|
| Q |
563 |
aatgcattagtatgtaatatcgtactttgatttacaatacgtcaaaaatttgcatcaaaacactccttgtgtccaaaattggaagcaacaactctgtgta |
662 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
30519735 |
aatgcattagtatgcaatattgtactttgatttacaatacataaaaaatttgcatcaaaacactccttgtgtccaaaattggaagcaaccattctgtgta |
30519834 |
T |
|
| Q |
663 |
gattttggtcttgtgtataccttgatgtatataattcattcagtatctccaaatcactgaactactcattcgtgaactagtaaattgttgtttaccttga |
762 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30519835 |
gattttggttttgtgtataccttgatgtatataattcattcagtatctccaaaccactgaactactcattcgtgaactagtaaattgttgtttaccttga |
30519934 |
T |
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| Q |
763 |
tcttgtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccct |
842 |
Q |
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| T |
30519935 |
tattgtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccct |
30520014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 30519182 - 30519262
Alignment:
| Q |
1 |
aggtgtatgatgacacatatgatgaggttggaagaaagttgatctccatttggaatgattatcccataatttgttcttgct |
81 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30519182 |
aggtgtatgatgacacatatgatgaggttggaagaaagttgatctccatttggaatgattatcccataatttgttcttgct |
30519262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 767 - 842
Target Start/End: Original strand, 35633820 - 35633895
Alignment:
| Q |
767 |
gtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccct |
842 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
35633820 |
gtatagggttacataattatatatatgctcttgtataaaactgcttgctgaaatatgggtcaagcataaggaccct |
35633895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 767 - 842
Target Start/End: Original strand, 42247350 - 42247425
Alignment:
| Q |
767 |
gtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccct |
842 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
42247350 |
gtatagggttacataattatatatatgctcttgtataaaactgcttgctgaaatatgggtcaagcataaggaccct |
42247425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 767 - 840
Target Start/End: Original strand, 45384840 - 45384913
Alignment:
| Q |
767 |
gtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggacc |
840 |
Q |
| |
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||||||||| |||||||||||||||||| |||||| ||||||||||||| ||||||||||| |||||||||||| |
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| T |
45384840 |
gtatagggtaacataattatatatatgctcttgtaaaaaactgcttgctgaaatatgggtcaagcataaggacc |
45384913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 767 - 842
Target Start/End: Complemental strand, 48755063 - 48754988
Alignment:
| Q |
767 |
gtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccct |
842 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| | |||||||||||||| |
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| T |
48755063 |
gtatagggtaacataattatatatatgctcttgtataaaactgcttgccgaaatatgggccaagcataaggaccct |
48754988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38897076 - 38897153
Alignment:
| Q |
1 |
aggtgtatgatgacacatatgatgaggtt----ggaagaaagttgatctccatttggaatgattatcccataatttgtt |
75 |
Q |
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||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
38897076 |
aggtgtatgatgacacatatgatgaggttgatagcaagaaagttg-catccatttggaatgattatctcataatttgtt |
38897153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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