View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_low_11 (Length: 485)
Name: NF5706_low_11
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 11 - 467
Target Start/End: Original strand, 10073905 - 10074361
Alignment:
| Q |
11 |
atgagatgaacattggtaaaaatgtgcttgtcattttcataattttattcttttcaaattatgtaggtgtttgacatgtttgacacaaattcccatggag |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10073905 |
atgatatgaacattggtaaaaatgtgcttgtcattttcataattttattcttttcaaattatgtaggtgtttgacatgtttgacacaaattcccatggag |
10074004 |
T |
|
| Q |
111 |
tactcaatttcaaagagtttgcttctgctatgtctattttccatccaattgcaccagtggatgataagattgaatgtaagtgtgacaaatatttttatca |
210 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10074005 |
tactcaatttcaaagagtttgcatctgctatgtctattttccatccaattgcaccagtggatgataagattgaatgtaagtgtgacaaatatttttatca |
10074104 |
T |
|
| Q |
211 |
agactttaaacatcttctagtcaacaannnnnnnnattagaaaggaaaggctttttggacatgaattccatgcagttagaaaagctcgccactacacgtg |
310 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10074105 |
agactttaaacatcttctagtcaacaattttttttattagaaaggaaaggctttttggacatgaattccatgcagttagaaaagctcgccgctacacgtg |
10074204 |
T |
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| Q |
311 |
ttaattgatctcggccattgacttgagattggtcggtttctaaataatctttacgttgatttaagatctgatagctgagatctataacagtgtgaagccg |
410 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10074205 |
ttaattgatctcggccattgacttgtgattggtcggtttctaaataatctttacgttgatttaagatctgatagctgagatctataacagtgtgaagccg |
10074304 |
T |
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| Q |
411 |
tcacgcagtaaccgcgtggaatccagatcctaattcatatgcttgttgtgatttcct |
467 |
Q |
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| T |
10074305 |
tcacgcagtaaccgcgtggaatccagatcctaattcatatgcttgttgtgatttcct |
10074361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 55 - 203
Target Start/End: Original strand, 10031183 - 10031331
Alignment:
| Q |
55 |
ttattcttttcaaattatgtaggtgtttgacatgtttgacacaaattcccatggagtactcaatttcaaagagtttgcttctgctatgtctattttccat |
154 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||| |
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| T |
10031183 |
ttattcttttcaaattatgtaggtgtttgacatgtttgacacaaattcccatggagtactcgatttcaaagagtttgcatctgctctgtctattttccat |
10031282 |
T |
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| Q |
155 |
ccaattgcaccagtggatgataagattgaatgtaagtgtgacaaatatt |
203 |
Q |
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| T |
10031283 |
ccaattgcaccaattgatgataagattgattgtaagtgtgacaaatatt |
10031331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 55 - 203
Target Start/End: Original strand, 10053096 - 10053244
Alignment:
| Q |
55 |
ttattcttttcaaattatgtaggtgtttgacatgtttgacacaaattcccatggagtactcaatttcaaagagtttgcttctgctatgtctattttccat |
154 |
Q |
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| T |
10053096 |
ttattcttttcaaattatgtaggtgtttgacatgtttgacacaaattcccatggagtactcgatttcaaagagtttgcatctgctctgtctattttccat |
10053195 |
T |
|
| Q |
155 |
ccaattgcaccagtggatgataagattgaatgtaagtgtgacaaatatt |
203 |
Q |
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|||||||||||| | |||||||||||||| ||||||||||||||||||| |
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| T |
10053196 |
ccaattgcaccaattgatgataagattgattgtaagtgtgacaaatatt |
10053244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 55 - 204
Target Start/End: Original strand, 10063338 - 10063487
Alignment:
| Q |
55 |
ttattcttttcaaattatgtaggtgtttgacatgtttgacacaaattcccatggagtactcaatttcaaagagtttgcttctgctatgtctattttccat |
154 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||| |||||| ||||| |||||||| |
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| T |
10063338 |
ttattattttcaaattatgcaggtgtttgacatgtttgacacaaattcacatggagcactcgatttcaaagagtttgcatctgctctgtctgttttccat |
10063437 |
T |
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| Q |
155 |
ccaattgcaccagtggatgataagattgaatgtaagtgtgacaaatattt |
204 |
Q |
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|||||||||||| | |||||||||||||||||||||||| |||||||||| |
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| T |
10063438 |
ccaattgcaccaattgatgataagattgaatgtaagtgttacaaatattt |
10063487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 340
Target Start/End: Original strand, 10063520 - 10063598
Alignment:
| Q |
262 |
tttttggacatgaattccatgcagttagaaaagctcgccactacacgtgttaattgatctcggccattgacttgagatt |
340 |
Q |
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|||||||||||| || ||||| |||||||||||| ||| | |||| ||||||||||||||||| |||||| |||||||| |
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| T |
10063520 |
tttttggacatggatcccatggagttagaaaagcacgcaattacatgtgttaattgatctcggtcattgatttgagatt |
10063598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 10031364 - 10031412
Alignment:
| Q |
246 |
attagaaaggaaaggctttttggacatgaattccatgcagttagaaaag |
294 |
Q |
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||||||||||||| |||||||||| || |||||||||||||||||||| |
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| T |
10031364 |
attagaaaggaaattctttttggacctggattccatgcagttagaaaag |
10031412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 10053277 - 10053325
Alignment:
| Q |
246 |
attagaaaggaaaggctttttggacatgaattccatgcagttagaaaag |
294 |
Q |
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||||||||||||| |||||||||| || |||||||||||||||||||| |
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| T |
10053277 |
attagaaaggaaattctttttggacctggattccatgcagttagaaaag |
10053325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 467
Target Start/End: Original strand, 10063701 - 10063749
Alignment:
| Q |
419 |
taaccgcgtggaatccagatcctaattcatatgcttgttgtgatttcct |
467 |
Q |
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| T |
10063701 |
taactgcgtggaatccaaatcctaattcatatggttgttgtgatctcct |
10063749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 12534158 - 12534215
Alignment:
| Q |
168 |
tggatgataagattgaatgtaagtgtgacaaatatttttatcaagactttaaacatcttc |
227 |
Q |
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| T |
12534158 |
tggatgataagattgaatgtaagagtgacaaata--tttatcaagactttatacatcttc |
12534215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 12534018 - 12534065
Alignment:
| Q |
52 |
attttattcttttcaaattatgtaggtgtttgacatgtttgacacaaa |
99 |
Q |
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||||||||||||||||||| ||| |||||||||| |||||||||||| |
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| T |
12534018 |
attttattcttttcaaattgtgttggtgtttgaccagtttgacacaaa |
12534065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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