View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5706_low_12 (Length: 485)

Name: NF5706_low_12
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5706_low_12
NF5706_low_12
[»] chr3 (9 HSPs)
chr3 (103-263)||(5565257-5565417)
chr3 (272-405)||(5565170-5565302)
chr3 (189-305)||(31896518-31896633)
chr3 (307-387)||(14175288-14175364)
chr3 (189-305)||(31945875-31945990)
chr3 (171-216)||(13539573-13539618)
chr3 (189-305)||(31912227-31912342)
chr3 (343-380)||(13539487-13539524)
chr3 (189-305)||(31688234-31688349)
[»] chr8 (1 HSPs)
chr8 (346-443)||(43618600-43618697)
[»] chr2 (1 HSPs)
chr2 (21-70)||(274714-274763)
[»] chr7 (1 HSPs)
chr7 (343-395)||(7854246-7854298)
[»] chr4 (1 HSPs)
chr4 (342-403)||(31952902-31952963)
[»] scaffold0007 (1 HSPs)
scaffold0007 (294-372)||(257658-257735)
[»] scaffold0003 (1 HSPs)
scaffold0003 (189-288)||(42747-42845)
[»] chr6 (1 HSPs)
chr6 (189-288)||(27444516-27444614)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 103 - 263
Target Start/End: Complemental strand, 5565417 - 5565257
Alignment:
Q  103 aaacaaagatcataatcaacgaatgattcagtattagaaatgaggaatacgaaaactgaaaataacaattaaccttgcaaaataaaagaagcttctgaca 202  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||    
T  5565417 aaacaaagatcaacatcaatgaatgattcagtattagaaatgaggaatacaaaagcagaaaataacaattaaccttgcaaaataaaagaagcttctgaca 5565318  T
Q  203 gcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactc 263  Q
    | |||  |||| || ||| ||||||||||| |||| ||| ||||| |||||||| ||||||    
T  5565317 gtgacatcgacacggtgaagagcgaattccgacgcagtggtcaacgacggtggtgcaactc 5565257  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 272 - 405
Target Start/End: Complemental strand, 5565302 - 5565170
Alignment:
Q  272 tgaagagcaaattccgatgcgatggtcaacgatggtggtgcaactccgacgtggtggaaagcaagtgggtttttgtagaggatgaagagatgaagacgat 371  Q
    |||||||| |||||||| ||  |||||||||| ||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||| ||||| ||    
T  5565302 tgaagagcgaattccgacgcagtggtcaacgacggtggtgcaactccggcgtggtggaaaacaagtgggtttt-gtagaggacgaagagattaagactat 5565204  T
Q  372 gatgcttttactttagtgggagaaggctaaaaaa 405  Q
    |||||||||||||||||||||||||||| |||||    
T  5565203 gatgcttttactttagtgggagaaggctgaaaaa 5565170  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 305
Target Start/End: Original strand, 31896518 - 31896633
Alignment:
Q  189 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 288  Q
    |||||||||| |||||||| | |||||| ||| |||||||| || |||||||||| ||||| |||||| |||||| || ||| | ||||||| |||||||    
T  31896518 agaagcttctaacagcgacactgacgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcgcggttaagagcatattccga 31896616  T
Q  289 tgcgatggtcaacgatg 305  Q
     ||| ||||||||||||    
T  31896617 cgcggtggtcaacgatg 31896633  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 387
Target Start/End: Original strand, 14175288 - 14175364
Alignment:
Q  307 tggtgcaactccgacgtggtggaaagcaagtgggtttttgtagaggatgaagagatgaagacgatgatgcttttactttag 387  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||||| ||||| ||||||||   ||||||||||||||||    
T  14175288 tggtgcaactccggcgtggtggaaagcaaatggg-ttttgtagaggacgaagaaatgaagac---gatgcttttactttag 14175364  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 189 - 305
Target Start/End: Original strand, 31945875 - 31945990
Alignment:
Q  189 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 288  Q
    |||||||||| |||||||| | | |||| ||| |||||||| || |||||||||| ||||| |||||| |||||| || ||| | ||||||| |||||||    
T  31945875 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcgcggttaagagcatattccga 31945973  T
Q  289 tgcgatggtcaacgatg 305  Q
     ||| ||||||||||||    
T  31945974 cgcggtggtcaacgatg 31945990  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 13539618 - 13539573
Alignment:
Q  171 ttaaccttgcaaaataaaagaagcttctgacagcgaccccgacgcg 216  Q
    |||||||||||||||||||||||||||||||||| | |||||||||    
T  13539618 ttaaccttgcaaaataaaagaagcttctgacagcaaacccgacgcg 13539573  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 305
Target Start/End: Original strand, 31912227 - 31912342
Alignment:
Q  189 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 288  Q
    |||||||||| |||||||| | | |||| ||| |||||||| || |||||||||| ||||| |||||| |||||| ||  || | ||||||| |||||||    
T  31912227 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcacggttaagagcatattccga 31912325  T
Q  289 tgcgatggtcaacgatg 305  Q
     ||| ||||||||||||    
T  31912326 cgcggtggtcaacgatg 31912342  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 13539524 - 13539487
Alignment:
Q  343 tttgtagaggatgaagagatgaagacgatgatgctttt 380  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  13539524 tttgcagaggatgaagagatgaagacaatgatgctttt 13539487  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 305
Target Start/End: Complemental strand, 31688349 - 31688234
Alignment:
Q  189 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 288  Q
    |||||||||| |||||||| | | |||| ||| |||||||| |  |||||||||| ||||| |||||| |||||| |  ||| | ||||||| |||| ||    
T  31688349 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ctgacgcggtgattaacaagggtggtgcaactccgacgcggttaagagcatattctga 31688251  T
Q  289 tgcgatggtcaacgatg 305  Q
     ||| ||||||||||||    
T  31688250 cgcggtggtcaacgatg 31688234  T

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Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 346 - 443
Target Start/End: Original strand, 43618600 - 43618697
Alignment:
Q  346 gtagaggatgaagagatgaagacgatgatgcttttactttagtgggagaaggctaaaaaattaacgaaatgagggaataagaagaagagtttttgtgt 443  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||| ||||||||||| ||||||||||    
T  43618600 gtagaagatgaagagatgaagacgatgatgcttttactttagtgggagaaggctaaaaaatgaagcaaatgagggcataagaagaagggtttttgtgt 43618697  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 274763 - 274714
Alignment:
Q  21 atacctcatcaccaggcaaggtgctggcaccagtaatggtaatatcttgt 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  274763 atacctcatcaccaggcaaggtgctggcaccagtaatggtaatatcttgt 274714  T

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Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 7854298 - 7854246
Alignment:
Q  343 tttgtagaggatgaagagatgaagacgatgatgcttttactttagtgggagaa 395  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7854298 tttgcagaggatgaagagatgaagacgatgatgcttttactttagtgggagaa 7854246  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 403
Target Start/End: Original strand, 31952902 - 31952963
Alignment:
Q  342 ttttgtagaggatgaagagatgaagacgatgatgcttttactttagtgggagaaggctaaaa 403  Q
    |||||||||||||||||||||||||| |||||||  |||| ||||||||||| |||| ||||    
T  31952902 ttttgtagaggatgaagagatgaagatgatgatggctttattttagtgggaggaggccaaaa 31952963  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 257735 - 257658
Alignment:
Q  294 tggtcaacgatggtggtgcaactccgacgtggtggaaagcaagtgggtttttgtagaggatgaagagatgaagacgatg 372  Q
    ||||||||||  |||||  ||||||| ||||| ||||||||| |||||||| |||||||| ||||| ||||||||||||    
T  257735 tggtcaacgacagtggtttaactccggcgtggaggaaagcaaatgggtttt-gtagaggacgaagaaatgaagacgatg 257658  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 288
Target Start/End: Original strand, 42747 - 42845
Alignment:
Q  189 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 288  Q
    |||||||||| |||||||| | |  ||| | | |||||||| || |||||||||| ||||||||||||||||||| || ||| | ||||||| |||||||    
T  42747 agaagcttctaacagcgacactggtgcgataaagagcgaat-ccgacgcggtgattaacaacggtggttcaactccggcgcggttaagagcatattccga 42845  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 288
Target Start/End: Complemental strand, 27444614 - 27444516
Alignment:
Q  189 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 288  Q
    |||||||||| |||||||| | |  ||| | | |||||||| || |||||||||| ||||||||||||||||||| || ||| | ||||||| |||||||    
T  27444614 agaagcttctaacagcgacactggtgcgataaagagcgaat-ccgacgcggtgattaacaacggtggttcaactccggcgcggttaagagcatattccga 27444516  T

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