View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5706_low_14 (Length: 471)

Name: NF5706_low_14
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5706_low_14
NF5706_low_14
[»] chr3 (2 HSPs)
chr3 (10-453)||(39712382-39712825)
chr3 (10-440)||(11528006-11528433)
[»] chr4 (2 HSPs)
chr4 (67-453)||(11149048-11149433)
chr4 (67-441)||(34538774-34539147)
[»] chr2 (6 HSPs)
chr2 (67-441)||(28166311-28166684)
chr2 (67-440)||(44905157-44905529)
chr2 (94-275)||(37952509-37952690)
chr2 (65-316)||(37896715-37896966)
chr2 (65-283)||(37958224-37958442)
chr2 (379-445)||(37952800-37952866)
[»] chr1 (2 HSPs)
chr1 (67-441)||(13228303-13228676)
chr1 (67-441)||(40768262-40768635)
[»] chr7 (1 HSPs)
chr7 (67-441)||(38757292-38757665)


Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 10 - 453
Target Start/End: Complemental strand, 39712825 - 39712382
Alignment:
Q  10 aagaaaataatcaccttgctccaatattaacacacaaaactagggttgaagatattaataacattgaaaatgacacattcactcttccattgttggcttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39712825 aagaaaataatcaccttgctccaatattaacacacaaaactagggttgaagatattaatgacattgaaaatgacacattcactcttccattgttggcttt 39712726  T
Q  110 gcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcatttcatgaaatcttggtct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712725 gcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcatttcatgaaatcttggtct 39712626  T
Q  210 tttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgatagagaagttttgaaggaccctagaggacttgaggatcttattttaa 309  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712625 tttatccatcaaggaggtgatgcagctgaattgaagtcactaccttgttttgatagagaagttttgaaggaccctagaggacttgaggatcttattttaa 39712526  T
Q  310 gagattannnnnnnacaagaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttt 409  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712525 gagattatttttttacaagaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttt 39712426  T
Q  410 tggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatc 453  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  39712425 tggaaaagaagaaattgaggggatgaaaaaatgggtgctgaatc 39712382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 10 - 440
Target Start/End: Complemental strand, 11528433 - 11528006
Alignment:
Q  10 aagaaaataatcaccttgctccaatattaacacacaaaactagggttgaagatattaataacattgaaaatgacacattcactcttccattgttggcttt 109  Q
    |||||| ||||||||||| ||||| ||||||| ||||||  | | |||| ||||   |||||||||||||||||||||||| ||||||||||||||||||    
T  11528433 aagaaactaatcaccttgttccaacattaacaaacaaaaacaagtttgatgata---ataacattgaaaatgacacattcattcttccattgttggcttt 11528337  T
Q  110 gcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcatttcatgaaatcttggtct 209  Q
    ||||||| ||||||||||| |||||||| ||||||||||||| |||||||| ||||||||||||| ||  |||||| |||||||||||||||||||||||    
T  11528336 gcaagtcacagtttttcccgaccatggtctttgcattggcatcacatattgtcacgtgatggatgatagaagttgcgatcatttcatgaaatcttggtct 11528237  T
Q  210 tttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgatagagaagttttgaaggaccctagaggacttgaggatcttattttaa 309  Q
    |||||||||||| ||||||| | || ||||||||| ||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| || | ||||    
T  11528236 tttatccatcaaagaggtgatgtagttgaattgaaatcactaccttgttttgacagagaagttttgagggacccaagaggacttgaggatgttttcttaa 11528137  T
Q  310 gagattannnnnnnacaagaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttt 409  Q
    | || ||       |  |||||||||||||||  ||||||||||||| ||||||||||||  | ||||||| |||||| | |||||| |||||||| |||    
T  11528136 gggactattttgtaatgagaaaatcatggaagcatagactcattgctgaaagtcaaagcaaggaagaacatcaagattttgttaaggcaattattgtttt 11528037  T
Q  410 tggaaaagaagaaattgaagggatgaaaaaa 440  Q
    ||||||||||||||||||  |||||||||||    
T  11528036 tggaaaagaagaaattgagaggatgaaaaaa 11528006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 67 - 453
Target Start/End: Original strand, 11149048 - 11149433
Alignment:
Q  67 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 166  Q
    ||||||||||||||||||||||||  ||||| ||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| |||||||||||| |    
T  11149048 ataacattgaaaatgacacattcatccttccgttgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgccacat 11149147  T
Q  167 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgataga 266  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  | | || |||||||||| ||||||||||||||||||||    
T  11149148 gatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggaaatgtagttgaattgaagacactaccttgttttgataga 11149247  T
Q  267 gaagttttgaaggaccctagaggacttgaggatcttattttaagagattannnnnnnacaagaaaatcatggaagtttagactcattgctcaaagtcaaa 366  Q
    |||||||||| ||| || | |||||||||| || || | || || || ||       |  |||||||||||||||  ||||||||||||| ||| | |||    
T  11149248 gaagttttgaggga-ccaaaaggacttgagaatattttcttcagtgactattttgcaatgagaaaatcatggaagaatagactcattgctgaaactgaaa 11149346  T
Q  367 gcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatc 453  Q
     |||   |||||||||||||| | |||||| |||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||    
T  11149347 tcaccaaagaacatgaagattttgttaaggcaattattgtttttggaaaagaagaaattgaggggatgaaaaaatatgtgctgaatc 11149433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 67 - 441
Target Start/End: Complemental strand, 34539147 - 34538774
Alignment:
Q  67 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 166  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| |||||||| | |||    
T  34539147 ataacattgaaaatgacacattcatccttccattgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgtcccgt 34539048  T
Q  167 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgataga 266  Q
    |||||||| ||| |||||||||||||||||||||| ||| ||||||||||||||||||||  | | || ||||||||||||||||||||||||||| | |    
T  34539047 gatggatgataatagttgcaatcatttcatgaaatattgatcttttatccatcaaggaggaaatgtagttgaattgaagtcactaccttgttttgacaaa 34538948  T
Q  267 gaagttttgaaggaccctagaggacttgaggatcttattttaagagattannnnnnnacaagaaaatcatggaagtttagactcattgctcaaagtcaaa 366  Q
    |||||||||| ||| || | |||||||||| || || | ||  | || ||       |  |||||||||||||||  |||||||||| || ||| |||||    
T  34538947 gaagttttgaggga-ccaaaaggacttgagaatgttttcttcggtgactattttgcaatgagaaaatcatggaagcctagactcattactgaaactcaaa 34538849  T
Q  367 gcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaat 441  Q
     |||   |||||||||||||| | |||||| |||||||| ||||||||||||||||||||| |||||||||||||    
T  34538848 tcaccaaagaacatgaagattttgttaaggcaattattgtttttggaaaagaagaaattgaggggatgaaaaaat 34538774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 67 - 441
Target Start/End: Complemental strand, 28166684 - 28166311
Alignment:
Q  67 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 166  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| ||||||||||||||    
T  28166684 ataacattgaaaatgacacattcatccttccattgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgccacgt 28166585  T
Q  167 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgataga 266  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  | | || ||||||||||||| ||||||||||||| |||    
T  28166584 gatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggaaatgtagttgaattgaagtcattaccttgttttgacaga 28166485  T
Q  267 gaagttttgaaggaccctagaggacttgaggatcttattttaagagattannnnnnnacaagaaaatcatggaagtttagactcattgctcaaagtcaaa 366  Q
    |||||||||| ||| || | |||||||||| || || | || || || ||       |  |||||||||||||||  ||||||||||||| ||| |||||    
T  28166484 gaagttttgaggga-ccaaaaggacttgagaatgttttcttcagtgactattttgcaatgagaaaatcatggaagcctagactcattgctgaaactcaaa 28166386  T
Q  367 gcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaat 441  Q
     |||   |||||||||||||| | |||| | |||||||| ||||||||||||||||||||| |||||||||||||    
T  28166385 ccaccaaagaacatgaagattttattaaagcaattattgtttttggaaaagaagaaattgaggggatgaaaaaat 28166311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 67 - 440
Target Start/End: Complemental strand, 44905529 - 44905157
Alignment:
Q  67 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 166  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| ||||||||||||||    
T  44905529 ataacattgaaaatgacacattcatccttccattgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgccacgt 44905430  T
Q  167 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgataga 266  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  | | || |||||||||||||||| |||||||||| |||    
T  44905429 gatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggaaatgtagttgaattgaagtcactatcttgttttgacaga 44905330  T
Q  267 gaagttttgaaggaccctagaggacttgaggatcttattttaagagattannnnnnnacaagaaaatcatggaagtttagactcattgctcaaagtcaaa 366  Q
    |||||||||| ||| || | |||||||||  || || | || |  || ||       |  |||||||||||||||  ||||||||||||| ||| |||||    
T  44905329 gaagttttgaggga-ccaaaaggacttgaaaatgttttcttcaatgactattttgcaatgagaaaatcatggaagcctagactcattgctgaaactcaaa 44905231  T
Q  367 gcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaa 440  Q
     |||   |||||||||| ||| | |||||| |||||||| ||||||||||||||||||||| ||||||||||||    
T  44905230 tcaccaaagaacatgaacattttgttaaggcaattattgtttttggaaaagaagaaattgaggggatgaaaaaa 44905157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 94 - 275
Target Start/End: Original strand, 37952509 - 37952690
Alignment:
Q  94 ttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcattt 193  Q
    |||| |||||| ||||||||||| | ||||| |||||||||||| ||||||||| ||| | ||||||||| |||||||||| |||| |||||||||||||    
T  37952509 ttccgttgttgtctttgcaagtcacggttttccccaaccatggtctttgcattgccatcaaatattgccatgtgatggatgataactgttgcaatcattt 37952608  T
Q  194 catgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgatagagaagttttg 275  Q
     |||||||||||||||||||||||||    |||||| | || ||| || ||||| | |||||||||||| ||| ||||||||    
T  37952609 aatgaaatcttggtcttttatccatcgtaaaggtgatgtagttgacttcaagtcgcaaccttgttttgacagacaagttttg 37952690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 65 - 316
Target Start/End: Complemental strand, 37896966 - 37896715
Alignment:
Q  65 taataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccac 164  Q
    |||| ||||||||||| ||||||||| | | || ||||||||||||||||  || ||||| || ||||||||| |||||||||  || |||||||| ||     
T  37896966 taatgacattgaaaataacacattcattttccctttgttggctttgcaagcttctgttttccctaaccatggtctttgcattgcaatcacatattgtcat 37896867  T
Q  165 gtgatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgata 264  Q
    || ||||||| ||   |||| | ||||||||||||||||||||||||||| |||  |    |||||| || ||| |||||||||  ||||||||||||||    
T  37896866 gtaatggatgatagttgttgtagtcatttcatgaaatcttggtcttttatgcatagaaattgtgaagtagttgacttgaagtcaacaccttgttttgata 37896767  T
Q  265 gagaagttttgaaggaccctagaggacttgaggatcttattttaagagatta 316  Q
    || || |||| | |||||| | ||| |||||  || || | |||||||||||    
T  37896766 gaaaaatttttagggacccaaaagggcttgaaaatgttttcttaagagatta 37896715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 283
Target Start/End: Original strand, 37958224 - 37958442
Alignment:
Q  65 taataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccac 164  Q
    |||| ||||||| ||| ||||||||| | | || |||||| |||||||||  || ||||| || ||||||||| |||||||||  || |||||||| ||     
T  37958224 taatgacattgagaataacacattcattttccctttgttgtctttgcaagcttctgttttccctaaccatggtctttgcattgcaatcacatattgtcat 37958323  T
Q  165 gtgatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgata 264  Q
    || ||||||| ||   |||| | |||||||||||| |||||||||||||| |||  |    |||||| || ||| |||||||||   |||||||||||||    
T  37958324 gtaatggatgatagttgttgtagtcatttcatgaagtcttggtcttttatacatagaaattgtgaagtagttgacttgaagtcaactccttgttttgata 37958423  T
Q  265 gagaagttttgaaggaccc 283  Q
    || |  |||||| ||||||    
T  37958424 gaaattttttgagggaccc 37958442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 445
Target Start/End: Original strand, 37952800 - 37952866
Alignment:
Q  379 atgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaatgggt 445  Q
    ||||||||| | |||||| |||||||| ||| |||||||||||||| || |||||||||||||||||    
T  37952800 atgaagattgtgttaaggcaattattgttttcggaaaagaagaaatcgaggggatgaaaaaatgggt 37952866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 67 - 441
Target Start/End: Original strand, 13228303 - 13228676
Alignment:
Q  67 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 166  Q
    |||||||||||||||||||| |||  ||||||||||| |||||||||||| |||||||||   |||||||| ||||||||||||| ||||||||||||||    
T  13228303 ataacattgaaaatgacacaatcatccttccattgttagctttgcaagtcacagtttttcttgaccatggtatttgcattggcatcacatattgccacgt 13228402  T
Q  167 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgataga 266  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||  | | || ||||||||||||||||||||||||||| |||    
T  13228403 gatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccataaaggaggaaatgtagttgaattgaagtcactaccttgttttgacaga 13228502  T
Q  267 gaagttttgaaggaccctagaggacttgaggatcttattttaagagattannnnnnnacaagaaaatcatggaagtttagactcattgctcaaagtcaaa 366  Q
    |||||||||| ||| || | || ||||||| || || | || || || ||       | ||||||||||||||||  ||||||||||||| ||| |||||    
T  13228503 gaagttttgaggga-ccaaaagaacttgagaatgttttcttcagtgactattttgcaataagaaaatcatggaagcctagactcattgctgaaactcaaa 13228601  T
Q  367 gcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaat 441  Q
     |||   |||||||||||||| | |||||  |||||||| |||| |||||||||||||||| |||||||||||||    
T  13228602 tcaccaaagaacatgaagattttgttaagacaattattgtttttagaaaagaagaaattgaggggatgaaaaaat 13228676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 67 - 441
Target Start/End: Complemental strand, 40768635 - 40768262
Alignment:
Q  67 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 166  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||||    
T  40768635 ataacattgaaaatgacacattcatccttccattgttagctttgcaagtcacagtttttcctaaccatggtatttgcattggcatcacatattgccacgt 40768536  T
Q  167 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgataga 266  Q
    |||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||   | | || | ||||||||||||| ||||||||||| |||    
T  40768535 gatggatgataatagttgcaatcattttatgaaatcttggtcttttatccatcaaggagaaaatgtagttaaattgaagtcactgccttgttttgacaga 40768436  T
Q  267 gaagttttgaaggaccctagaggacttgaggatcttattttaagagattannnnnnnacaagaaaatcatggaagtttagactcattgctcaaagtcaaa 366  Q
    |||||||| |||   || | ||||| |||| || || | || || || ||       |  ||||||| |||||||  ||||||||||| | ||| |||||    
T  40768435 gaagtttt-aagagaccaaaaggacatgagaatgttttcttcagtgactattttgcaatgagaaaattatggaagcctagactcattgttgaaactcaaa 40768337  T
Q  367 gcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaat 441  Q
     |||   |||||||||||||| | |||||| |||||||| ||||||||||||||||||||| |||||||||||||    
T  40768336 tcaccaaagaacatgaagattttgttaaggcaattattgtttttggaaaagaagaaattgaggggatgaaaaaat 40768262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 7e-84; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 67 - 441
Target Start/End: Complemental strand, 38757665 - 38757292
Alignment:
Q  67 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 166  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| |||||||| ||| |    
T  38757665 ataacattgaaaatgacacattcatccttccattgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgacacat 38757566  T
Q  167 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgataga 266  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  | | || ||||||||||||||||||||||||||| |||    
T  38757565 gatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggaaatgtagttgaattgaagtcactaccttgttttgacaga 38757466  T
Q  267 gaagttttgaaggaccctagaggacttgaggatcttattttaagagattannnnnnnacaagaaaatcatggaagtttagactcattgctcaaagtcaaa 366  Q
    |||||||||| ||| || | |||||||||| || || | || || ||  |       |  |||||||||||||||  ||||||||||||| ||| |||||    
T  38757465 gaagttttgaggga-ccaaaaggacttgagaatgttttcttcagtgaccattttacaatgagaaaatcatggaagcctagactcattgctgaaactcaaa 38757367  T
Q  367 gcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaat 441  Q
     |||   |||||||||||||| | ||||   |||||||| ||||| ||||||||||||||| |||||||||||||    
T  38757366 tcaccaaagaacatgaagattttgttaaaacaattattgtttttgaaaaagaagaaattgaggggatgaaaaaat 38757292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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