View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_low_15 (Length: 466)
Name: NF5706_low_15
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 4498620 - 4498925
Alignment:
| Q |
11 |
gatgaacaattgtaccaaacttaaacaagttttggagggtggaaattccgatgcaggtttcttcaacacattagatttctacataggaatgggagttgga |
110 |
Q |
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| T |
4498620 |
gatgaacaattgtaccaaacttaaacaagttttggagggtggaaattccgatgcaggtttcttcaacacatcagatttctacataggaatgggagttgga |
4498719 |
T |
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| Q |
111 |
tttgcagcagggttttggggggtttgcattgctattttctttatcagaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatcttgttt |
210 |
Q |
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| T |
4498720 |
tttgcagcagggttttggggggtttgcattgctactttcttgatcagaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatcttgttt |
4498819 |
T |
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| Q |
211 |
atgatacctttgtctttatctgtcaagagggacgaaaatgtgggaattggaccatcccgctgctaggagtctggtcgatattgaagttgtattgaagtct |
310 |
Q |
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| T |
4498820 |
atgatacctttgtctttatctgtcaagagggatgaaaatgtgggaattggaccataccgccgctaggagtctggtcgatattgaagttgtattgaagtct |
4498919 |
T |
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| Q |
311 |
cgtatt |
316 |
Q |
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|||||| |
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| T |
4498920 |
cgtatt |
4498925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 4329289 - 4329074
Alignment:
| Q |
11 |
gatgaacaattgtaccaaacttaaacaagttttggagggtggaaattccgatgcaggtttcttcaacacattagatttctacataggaatgggagttgga |
110 |
Q |
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|||||| |||||||| ||| | ||||||||||||||| |||||||||| ||||| |||||| | |||||| |||||||||| ||||||||||||||||| |
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| T |
4329289 |
gatgaataattgtacaaaaatgaaacaagttttggagcgtggaaattctgatgctggtttcgttgacacatcagatttctacgtaggaatgggagttgga |
4329190 |
T |
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| Q |
111 |
tttgcagcagggttttggggggtttgcattgctattttctttatcagaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatcttgttt |
210 |
Q |
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| T |
4329189 |
tttgcagcagggttttggggggtttgcattgctattttctttaacagaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatcttgttt |
4329090 |
T |
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| Q |
211 |
atgatacctttgtctt |
226 |
Q |
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|||| ||||||||||| |
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| T |
4329089 |
atgagacctttgtctt |
4329074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 230 - 316
Target Start/End: Complemental strand, 4329036 - 4328946
Alignment:
| Q |
230 |
ctgtcaagagggacgaaaatgtgggaattggaccatcccgctg----ctaggagtctggtcgatattgaagttgtattgaagtctcgtatt |
316 |
Q |
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| T |
4329036 |
ctgtcaagagggatgaaaatgtggaaattggaccataccgcacgccactaggagtctggtcgatattgaagttgcattgaagtctcatatt |
4328946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 447
Target Start/End: Original strand, 4499146 - 4499205
Alignment:
| Q |
390 |
gagggaataacaatcaaagcataaatactca--tagaagaaccgcaataaagtgagcatc |
447 |
Q |
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|||||||||||||||||| || ||||||||| |||| |||||||||||||||||||||| |
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| T |
4499146 |
gagggaataacaatcaaaacagaaatactcagatagacgaaccgcaataaagtgagcatc |
4499205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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