View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5706_low_16 (Length: 436)

Name: NF5706_low_16
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5706_low_16
NF5706_low_16
[»] chr6 (16 HSPs)
chr6 (13-225)||(23247216-23247428)
chr6 (271-416)||(23247026-23247170)
chr6 (51-225)||(23257601-23257778)
chr6 (55-225)||(23251628-23251798)
chr6 (271-416)||(23257411-23257555)
chr6 (13-225)||(23266162-23266371)
chr6 (271-416)||(23251437-23251581)
chr6 (71-224)||(23289582-23289729)
chr6 (71-224)||(23283239-23283389)
chr6 (113-213)||(23391074-23391174)
chr6 (271-325)||(23266062-23266116)
chr6 (88-171)||(23593009-23593092)
chr6 (113-215)||(23582849-23582948)
chr6 (113-215)||(23586732-23586831)
chr6 (355-414)||(23266002-23266060)
chr6 (132-167)||(23633835-23633870)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 6e-81; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 23247428 - 23247216
Alignment:
Q  13 aatactttaatgactaacaatattgaaattgtcgaagatgtcgtcgccacaaaggacctgaataggttttgtgtggaagtagaagaagagcaggaaatgt 112  Q
    |||||||||||||||||||||||||| | | ||| ||||||||||||||||||||| ||||||| ||||||||||||||| || ||| || |||||||||    
T  23247428 aatactttaatgactaacaatattgacactatcgtagatgtcgtcgccacaaaggagctgaatatgttttgtgtggaagttgatgaacaggaggaaatgt 23247329  T
Q  113 tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatattcatgtacaagattttcaaga 212  Q
    |||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23247328 tgaatatgccagagttgtggaggaatatggcgttgatgtcacctacacatagctttgagtatcatgagtatgacgatattcatgtacaagattttcaaga 23247229  T
Q  213 tgatgaggtatca 225  Q
    |||||||||||||    
T  23247228 tgatgaggtatca 23247216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 271 - 416
Target Start/End: Complemental strand, 23247170 - 23247026
Alignment:
Q  271 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaatactgcatatacataggttaaaattaaaaaggaatttctttttata 370  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23247170 ggattgtaggataggaaatgtctatactacaacctttttaattggtagcataaatactgcatatacataggttaaaattaaaaaggaatttctttttata 23247071  T
Q  371 gctttttatgtgaattattaaatcactaatcgagcatatagtgcat 416  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  23247070 gctttttatgtgaa-tattaaatcactaatcgagcatatagtgcat 23247026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 51 - 225
Target Start/End: Complemental strand, 23257778 - 23257601
Alignment:
Q  51 tgtcgtcgccacaaaggacctgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatg 150  Q
    |||||| |||||||||||  |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  23257778 tgtcgtggccacaaaggagttgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatg 23257679  T
Q  151 tcccctacacatagctttgagtatcatg---agtatgaagatattcatgtacaagattttcaagatgatgaggtatca 225  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||    
T  23257678 tcccctacacatagctttgagtatcatgatcagtatgaagatattcatgtacaagactttcaagatgatgaggtatca 23257601  T

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Target: chr6; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 55 - 225
Target Start/End: Complemental strand, 23251798 - 23251628
Alignment:
Q  55 gtcgccacaaaggacctgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtccc 154  Q
    ||||| ||| |||| ||||||| |||| |||| ||||| |||||||||   ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23251798 gtcgcaacacaggagctgaatatgtttcgtgttgaagtcgaagaagag---gaagtgttgaatatgccagagttgtggaggaatatggcactaatgtccc 23251702  T
Q  155 ctacacatagctttgagtatcatg---agtatgaagatattcatgtacaagattttcaagatgatgaggtatca 225  Q
    ||||||||||||||| ||||||||   ||||||||||||||||| ||||||| |||||||||||||||||||||    
T  23251701 ctacacatagctttgggtatcatgatcagtatgaagatattcatatacaagactttcaagatgatgaggtatca 23251628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 271 - 416
Target Start/End: Complemental strand, 23257555 - 23257411
Alignment:
Q  271 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaatactgcatatacataggttaaaattaaaaaggaatttctttttata 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||| ||||||    
T  23257555 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaattctgcatatacataggttgaaattgaaaaggagtttctctttata 23257456  T
Q  371 gctttttatgtgaattattaaatcactaatcgagcatatagtgcat 416  Q
    || ||||||||| |||||||||||||||||| ||| || |||||||    
T  23257455 gc-ttttatgtggattattaaatcactaatcaagcttaaagtgcat 23257411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 23266371 - 23266162
Alignment:
Q  13 aatactttaatgactaacaatattgaaattgtcgaagatgtcgtcgccacaaaggacctgaataggttttgtgtggaagtagaagaagagcaggaaatgt 112  Q
    |||||| |||||| || ||| ||||| | ||| | || ||| ||||||||||||||  |||||| |||||||||||||| ||||||      ||||||||    
T  23266371 aatactataatgattaccaacattgagactgttgtagctgttgtcgccacaaaggagttgaatatgttttgtgtggaagaagaaga------ggaaatgt 23266278  T
Q  113 tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatg---agtatgaagatattcatgtacaagattttca 209  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||| ||||| | ||||| |||||    
T  23266277 tgaatatgccggagttttggaggaatatggcactaatgtcccctacacatagctttgagtatcatgatcaatatgaagattttcattttcaagactttca 23266178  T
Q  210 agatgatgaggtatca 225  Q
    ||||||||||||||||    
T  23266177 agatgatgaggtatca 23266162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 271 - 416
Target Start/End: Complemental strand, 23251581 - 23251437
Alignment:
Q  271 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaatactgcatatacataggttaaaattaaaaaggaatttctttttata 370  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| ||||  ||||||||||||||||| || || ||||||||||| ||||||||    
T  23251581 ggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctgcatatacataggttgaatttgaaaaggaatttatttttata 23251482  T
Q  371 gctttttatgtgaattattaaatcactaatcgagcatatagtgcat 416  Q
    || |||||||||||||||||||||||||||| ||| || |||||||    
T  23251481 gc-ttttatgtgaattattaaatcactaatcaagcgtaaagtgcat 23251437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 23289729 - 23289582
Alignment:
Q  71 tgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttga 170  Q
    |||||| ||||||||||||||| ||| ||||  ||||| |||||||||||| |||||||||||  ||||||||||||||||||||||||||||| |||||    
T  23289729 tgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgcaagagttgtggaaaaatatggcactaatgtcccctacacatagttttga 23289630  T
Q  171 gtatcatgagtatgaagatattcatgtacaagattttcaagatgatgaggtatc 224  Q
    |   ||||||||||||||| || ||||||||   ||||||||||| ||||||||    
T  23289629 g---catgagtatgaagattttgatgtacaa---tttcaagatgaagaggtatc 23289582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 23283389 - 23283239
Alignment:
Q  71 tgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttga 170  Q
    |||||| ||||||||||||||| ||| ||||  ||||| ||||||||||| ||||| ||||||||||||||||  |||||||||||||||||||  | ||    
T  23283389 tgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagagatgtggaggaatatggcgttaatgtcccctacacatagtatgga 23283290  T
Q  171 gtatcatgagtatgaagatattcatgtacaagattttcaagatgatgaggtatc 224  Q
    |   |||||||||||| || || || ||||||| ||||||||||| ||||||||    
T  23283289 g---catgagtatgaaaattttgatttacaagactttcaagatgaagaggtatc 23283239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 23391174 - 23391074
Alignment:
Q  113 tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatattcatgtacaagattttcaaga 212  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| || |||| |||| |||||| |||||||||| ||||| ||||||||    
T  23391174 tgaacatgccagagttgttgaggaatatggcactaatgtctcctacacatagctctgggtataatgaatatgaaaatattcatgttcaagactttcaaga 23391075  T
Q  213 t 213  Q
    |    
T  23391074 t 23391074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 23266116 - 23266062
Alignment:
Q  271 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaat 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23266116 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaat 23266062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 23593092 - 23593009
Alignment:
Q  88 gaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgag 171  Q
    |||| |||| ||||| ||||| ||||||| || ||||||| || |||||||||||| ||||||||||||||||||||| |||||    
T  23593092 gaagaagaaaaagaggaggaagtgttgaacattccagagtcgttgaggaatatggctctaatgtcccctacacatagcgttgag 23593009  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 23582948 - 23582849
Alignment:
Q  113 tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatattcatgtacaagattttcaaga 212  Q
    |||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| | |||| |||||||| || ||||| |||   |||| ||||||||    
T  23582948 tgaacatgcaagagatgtggagtaatatggcgctaatgtctcctacacatagcttggggtattatgagtatcaatatattaatg---aagactttcaaga 23582852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 23586831 - 23586732
Alignment:
Q  113 tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatattcatgtacaagattttcaaga 212  Q
    |||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| | |||| |||||||| || ||||| |||   |||| ||||||||    
T  23586831 tgaacatgcaagagatgtggagtaatatggcgctaatgtctcctacacatagcttggggtattatgagtatcaatatattaatg---aagactttcaaga 23586735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 23266060 - 23266002
Alignment:
Q  355 ggaatttctttttatagctttttatgtgaattattaaatcactaatcgagcatatagtgc 414  Q
    |||||||||||| ||||||||| ||||||||| |||||||||||||| | |||| |||||    
T  23266060 ggaatttcttttcatagctttt-atgtgaatttttaaatcactaatcaatcataaagtgc 23266002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 23633870 - 23633835
Alignment:
Q  132 gaggaatatggcactaatgtcccctacacatagctt 167  Q
    |||||||||||| |||||||||||||||||||||||    
T  23633870 gaggaatatggctctaatgtcccctacacatagctt 23633835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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