View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_low_18 (Length: 413)
Name: NF5706_low_18
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 396
Target Start/End: Original strand, 36607512 - 36607888
Alignment:
| Q |
13 |
aatattgatgaacataaggctgcaaataagggtgctttaagatatcggatgcctgtgtaatacataaatgaaagttttcaggatatgtaccgatgggaaa |
112 |
Q |
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| T |
36607512 |
aatattgatgaacataaggctgcaaataagggtgctttaagatatcggatgcctgtgtaatacataaatgaaagttttcaggatatgtaccgatgggaaa |
36607611 |
T |
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| Q |
113 |
cttgtttcacaatgaaaataatgttggtctttaagagagacttactgttggacgatgctcggggtttttccttaacatgccttttatcagtgtcttcctg |
212 |
Q |
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| T |
36607612 |
cttgtttcacaatgaaaataatgttggtctttaagagagacttactgttggacgatgctcggggtttttccttaacatgccttttatcagtgttttcctg |
36607711 |
T |
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| Q |
213 |
tgtgtatggatttaaagtttaagattacatacatgcacagagaggaaagtaaaaagannnnnnnnnnnatgtggctctgatagttatcattatcaacttc |
312 |
Q |
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| T |
36607712 |
tgtgtatggatgtaaagtttaagattacatacatgcacagagaggaaagtaaaaaga-ttttttttttatgtggctctgatag------ttatcaacttc |
36607804 |
T |
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| Q |
313 |
atgttcattgatgatgcttaccagacaccaatgacatttcttacagtaaacaaaatttgaagtggtgcaataaatgcagtgtct |
396 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36607805 |
atgttcattgatgatgcttaccggacaccaatgacatttcttacagtaaacaaaatttgaagtggtgcaacaaatgcagtgtct |
36607888 |
T |
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