View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_low_25 (Length: 375)
Name: NF5706_low_25
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 39920399 - 39920047
Alignment:
| Q |
9 |
ttattctcacgctaatctgtgaggtaaacataaaatcttcttccttgttctattttatgatatgtttgcttaaaacaaactatagtatcagaactaagat |
108 |
Q |
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| T |
39920399 |
ttattctcacgctaatctgtgaggtaaacataaaatcttcttccttgttctattttatgatatgtttgctcaaaacaaactatagtatcagaactaagag |
39920300 |
T |
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| Q |
109 |
gtcccttctccctttgaatgcgtgtatgtatatgttgtttgtttgtgcgtctgtgttgttaatcactgctgcataatgcttagtagtttttgttgagaat |
208 |
Q |
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| T |
39920299 |
gtcccttctccctttgaatgcgtgtatgtatatgttgtttgtttgtgcgtctgtgttgttaatcactgctgcataatgcttagtagtttttgttgagaat |
39920200 |
T |
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| Q |
209 |
ttcaactaaatccgacttctctgtgatgatacagctgcattccatctttctgcatgtgagaaaggtgagacgaatggccggtattcgcgatgcaaggagt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39920199 |
ttcaactaaatccgacttctctgtgatgatacagctgcattccatctttctgcatgtgagaaaggtgagacgaatggccggtattcgcgatgcaaggagt |
39920100 |
T |
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| Q |
309 |
gttattgttaagttagaatggtttctgaattggaccaccttctttgtggcaag |
361 |
Q |
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| T |
39920099 |
gttattgttaagttagaatggtttctgaattggaccaccttctttgtggcaag |
39920047 |
T |
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