View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_low_28 (Length: 351)
Name: NF5706_low_28
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 33384652 - 33384869
Alignment:
| Q |
1 |
tgtcgtgtctggtgtctgtgatcgtatccgtgcttcatatatgttgattaaaattcaa-tatatataaaatgagaatgcattgaaaatctatttattgga |
99 |
Q |
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| T |
33384652 |
tgtcgtgtccagtgtctgtattcgtatccgtgcttcatatatgttgattaaaattcaaatatatataaaatgagaatgcattgaaaatctatttattgga |
33384751 |
T |
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| Q |
100 |
agatgttgagaacacatgactttcaggagcacacaaaatttgtgatcgtagaagaacaatgaaggaaggggattcatcccttggaaaaagatggatagaa |
199 |
Q |
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| T |
33384752 |
agatgttgagaacacatgactttcaggagcacacaaaatttgtgatcgtagaagaacaatgaaggaaggggattcatcccttggaaaaagatggatagaa |
33384851 |
T |
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| Q |
200 |
aagaatgcattttgaaaa |
217 |
Q |
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|||||||||||||||||| |
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| T |
33384852 |
aagaatgcattttgaaaa |
33384869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 209 - 342
Target Start/End: Original strand, 33385064 - 33385191
Alignment:
| Q |
209 |
ttttgaaaaatgaataacacataatcaataatcaatgaatttgatagaagaatgatttattaagcaaagaaagttttgtttcctattaatgttgtggaaa |
308 |
Q |
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| T |
33385064 |
ttttgaaaaaggaataacacataatcaatga------aatttgatagaagaatgatttattaagcaaagaaagttttgtttcctattaatgttgtggaaa |
33385157 |
T |
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| Q |
309 |
ttagtcctatatatacattatacttgacatgatg |
342 |
Q |
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| T |
33385158 |
ttagtcctatatatacattatacttgacatgatg |
33385191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 19482651 - 19482613
Alignment:
| Q |
1 |
tgtcgtgtctggtgtctgtgatcgtatccgtgcttcata |
39 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |
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| T |
19482651 |
tgtcgtgtctggtgtctgtgttcgtatccgtgcttcata |
19482613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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