View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_low_3 (Length: 617)
Name: NF5706_low_3
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 20 - 603
Target Start/End: Original strand, 23930541 - 23931124
Alignment:
| Q |
20 |
aagagtacacataacagatgcaaacaagcaaagatgggaagtaccatacaaccttatcccaagagaacaaccaccaccattaccacaaaccttaggaaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23930541 |
aagagtacacataacagatgcaaacaagcaaagatgggaagtaccatacaaccttatcccaagagaacaaccaccaccattaccacaaaccttaggaaag |
23930640 |
T |
|
| Q |
120 |
ttccnnnnnnnccctattgaagtctcagagtattcaggctcagagcttctattcagctacatttcaaatccctttagtttctcagtcaaaagaaaatcaa |
219 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23930641 |
ttccaaaaaaaccctattgaagtctcagagtattcaggctcagagcttctattcagctacatttcaaatccctttagtttctcagtcaaaagaaaatcaa |
23930740 |
T |
|
| Q |
220 |
atggtgaaacccttttcaactcaacttcaacttcttcagacccatttagttcacttgttttcaaagaccaatatcttgagatttcaacaaaattacctaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23930741 |
atggtgaaacccttttcaactcaacttcaacttcttcagacccatttagttcacttgttttcaaagaccaatatcttgagatttcaacaaaattacctaa |
23930840 |
T |
|
| Q |
320 |
agatgcttctttatatggtttgggagagaatacacaaccacatggtattaagttatatccaagtgacccttatactttatatacaacagatatttcagct |
419 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23930841 |
agatgcatctttatatggtttgggagagaatacacaaccacatgggattaaattatatccaagtgacccttatactttatatacaacagatatttcagct |
23930940 |
T |
|
| Q |
420 |
attaatcttaatgctgatttatatggatctcatcctatgtatatggatctgagaaataatggtggaaaagcttcagcacatgctgttttgttgttgaata |
519 |
Q |
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| T |
23930941 |
attaatcttaatgctgatttatatggatctcatcctatgtatatggatctgagaaataatggtggaaaagcttctgcacatgctgttttgttgttgaata |
23931040 |
T |
|
| Q |
520 |
gtaatggaatggatgtgttttataaaggaacttctttgacttataaggttattggtggtgtttttgatttttacttcttctctg |
603 |
Q |
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| T |
23931041 |
gtaatggaatggatgtgttttataaaggaacttctttgacttataaggttattggtggtgtttttgatttttacttcttctctg |
23931124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 4e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 279 - 598
Target Start/End: Complemental strand, 50121984 - 50121665
Alignment:
| Q |
279 |
ttcaaagaccaatatcttgagatttcaacaaaattacctaaagatgcttctttatatggtttgggagagaatacacaaccacatggtattaagttatatc |
378 |
Q |
| |
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|||||||||||||| | || ||||| || ||||| || ||| |||||||||| |||||||| |||||||| ||||||||| |||| || |||||| ||| |
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| T |
50121984 |
ttcaaagaccaatacttagaaatttctaccaaattgcccaaaaatgcttctttgtatggtttaggagagaacacacaaccaaatggaatgaagttacatc |
50121885 |
T |
|
| Q |
379 |
caagtgacccttatactttatatacaacagatatttcagctattaatcttaatgctgatttatatggatctcatcctatgtatatggatctgagaaataa |
478 |
Q |
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||| ||| ||||| ||||| |||||||| ||||| ||||||||||| || ||| |||||||||||||||| |||||| | || |||||||| |||||| | |
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| T |
50121884 |
caaatgatccttacactttgtatacaactgatatatcagctattaacctcaattctgatttatatggatcacatcctgtatacatggatctcagaaatta |
50121785 |
T |
|
| Q |
479 |
tggtggaaaagcttcagcacatgctgttttgttgttgaatagtaatggaatggatgtgttttataaaggaacttctttgacttataaggttattggtggt |
578 |
Q |
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|||||||||| ||| ||||||| |||| | ||||||||||| |||||||||||||||||||| ||||| | |||||||| || ||| ||||||| || |
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| T |
50121784 |
tggtggaaaaccttatgcacatggtgttcttttgttgaatagcaatggaatggatgtgttttacaaagggaactctttgacatacaagattattggagga |
50121685 |
T |
|
| Q |
579 |
gtttttgatttttacttctt |
598 |
Q |
| |
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| |||||||||||||||| |
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| T |
50121684 |
atacttgatttttacttctt |
50121665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 255 - 598
Target Start/End: Complemental strand, 50112430 - 50112084
Alignment:
| Q |
255 |
tcagacccatttagttcacttgttttcaaagaccaatatcttgagatttcaacaaaattacctaaagatgcttctttatatggtttgggagagaatacac |
354 |
Q |
| |
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|||||||||||| || || | || |||||||||||||| | || ||||| || ||| | || |||||||||||| | ||||||||||||||||| ||| |
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| T |
50112430 |
tcagacccatttggtccattggtcttcaaagaccaatacttggaaatttctactaaacttcccaaagatgcttctctgtatggtttgggagagaactcac |
50112331 |
T |
|
| Q |
355 |
aaccacatggtattaagttatatccaagtgacccttatactttatatacaacagatatttcagctattaatcttaatgctgatttatatggatctcatcc |
454 |
Q |
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| |||||||| || ||||| ||||| | ||| ||||||||||| ||||| || ||| | |||| |||||||| || ||||| ||||||| |||||||| |
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| T |
50112330 |
agccacatgggataaagttgtatcctaatgatccttatactttgtataccactgatgtagcagccattaatctcaacactgatctatatgggtctcatcc |
50112231 |
T |
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| Q |
455 |
tatgtatatggatctgagaaataat---ggtggaaaagcttcagcacatgctgttttgttgttgaatagtaatggaatggatgtgttttataaaggaact |
551 |
Q |
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| | || |||||||| |||||| || ||||| || || ||||||| |||||||||||||||||| |||||||||||||||||||| ||||| || |
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| T |
50112230 |
tgtatacatggatcttagaaatcatgaaggtggcaagcctaatgcacatggtgttttgttgttgaatagcaatggaatggatgtgttttacaaagggacc |
50112131 |
T |
|
| Q |
552 |
tctttgacttataaggttattggtggtgtttttgatttttacttctt |
598 |
Q |
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|||||||| || ||| ||||||| || || |||||||||||||||| |
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| T |
50112130 |
tctttgacgtacaagattattggaggggtacttgatttttacttctt |
50112084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 50122242 - 50122169
Alignment:
| Q |
24 |
gtacacataacagatgcaaacaagcaaagatgggaagtaccatacaaccttatcccaagagaacaaccaccacc |
97 |
Q |
| |
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||||||||||| |||||||| |||||||| ||||| || || ||||| ||| | ||||| || ||||||||||| |
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| T |
50122242 |
gtacacataactgatgcaaagaagcaaaggtgggaggttccctacaatcttttgccaagggagcaaccaccacc |
50122169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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