View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5706_low_36 (Length: 306)

Name: NF5706_low_36
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5706_low_36
NF5706_low_36
[»] chr8 (5 HSPs)
chr8 (162-281)||(26872395-26872514)
chr8 (1-100)||(26872576-26872672)
chr8 (1-82)||(17663566-17663644)
chr8 (1-82)||(17682722-17682800)
chr8 (1-52)||(4838680-4838728)
[»] scaffold1896 (1 HSPs)
scaffold1896 (1-87)||(472-555)
[»] chr5 (2 HSPs)
chr5 (1-82)||(31411845-31411923)
chr5 (1-52)||(31422753-31422801)
[»] chr4 (1 HSPs)
chr4 (1-51)||(12997566-12997613)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-52)||(64635-64683)
[»] chr2 (2 HSPs)
chr2 (1-52)||(20622489-20622537)
chr2 (2-52)||(17686342-17686389)
[»] scaffold0497 (1 HSPs)
scaffold0497 (68-100)||(11927-11959)
[»] scaffold0001 (1 HSPs)
scaffold0001 (44-80)||(47854-47890)
[»] scaffold0703 (1 HSPs)
scaffold0703 (43-78)||(6739-6774)
[»] chr3 (1 HSPs)
chr3 (70-100)||(9184831-9184861)
[»] chr6 (1 HSPs)
chr6 (5-33)||(5995727-5995755)


Alignment Details
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 162 - 281
Target Start/End: Complemental strand, 26872514 - 26872395
Alignment:
Q  162 aacaatcacatgcacctccttgtttctattatcatgtacctattttgttggagccgttggatctacgatctgacggtccttgcttcactgtcattttatc 261  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  26872514 aacaatcacgtgcacctccttgtttctattatcatgtacctattttgttggaaccgttggatctacgatctgacggtccctgcttcactgtcattttatc 26872415  T
Q  262 ccttttttagtgtttactct 281  Q
    ||||||||||||||||||||    
T  26872414 ccttttttagtgtttactct 26872395  T

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Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 26872672 - 26872576
Alignment:
Q  1 ccgcgccggaaaacactatctcgccggagaagatgatgatataagggggcggctgtttgttttgttaagagagaagtgagaacaattgtttagagagaga 100  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26872672 ccgcgccggaaaacactatctcgccggagaagatgat---ataagggggcggctgtttgttttgttaagagagaagtgagaacaattgtttagagagaga 26872576  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 17663644 - 17663566
Alignment:
Q  1 ccgcgccggaaaacactatctcgccggagaagatgatgatataagggggcggctgtttgttttgttaagagagaagtgagaa 82  Q
    ||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||||    
T  17663644 ccgcgccggaaaacactgtctcgccggagaagatgat---ataagggggcggctgtttgttttgttgagagagaagtgagaa 17663566  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 17682800 - 17682722
Alignment:
Q  1 ccgcgccggaaaacactatctcgccggagaagatgatgatataagggggcggctgtttgttttgttaagagagaagtgagaa 82  Q
    ||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||||    
T  17682800 ccgcgccggaaaacactgtctcgccggagaagatgat---ataagggggcggctgtttgttttgttgagagagaagtgagaa 17682722  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4838728 - 4838680
Alignment:
Q  1 ccgcgccggaaaacactatctcgccggagaagatgatgatataagggggcgg 52  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  4838728 ccgcgccggaaaacactatctcgccggagaaga---tgatataagggggcgg 4838680  T

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Target: scaffold1896 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold1896
Description:

Target: scaffold1896; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 472 - 555
Alignment:
Q  1 ccgcgccggaaaacactatctcgccggagaagatgatgatataagggggcggctgtttgttttgttaagagagaagtgagaacaatt 87  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  472 ccgcgccggaaaacactatctcgccggagaagatg---atataagggggcggctgtttgttttgttaagagagaagtgagaacaatt 555  T

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Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31411845 - 31411923
Alignment:
Q  1 ccgcgccggaaaacactatctcgccggagaagatgatgatataagggggcggctgtttgttttgttaagagagaagtgagaa 82  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||| |||||||||||||||    
T  31411845 ccgcgccggaaaacactatctcgccggagaagatg---atataagggggcggctgtttgttttgttgagagagaagtgagaa 31411923  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31422753 - 31422801
Alignment:
Q  1 ccgcgccggaaaacactatctcgccggagaagatgatgatataagggggcgg 52  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  31422753 ccgcgccggaaaacactatctcgccggagaa---gatgatataagggggcgg 31422801  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 12997566 - 12997613
Alignment:
Q  1 ccgcgccggaaaacactatctcgccggagaagatgatgatataagggggcg 51  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||    
T  12997566 ccgcgccggaaaacactatctcgccggagaagatg---atataagggggcg 12997613  T

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Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 64683 - 64635
Alignment:
Q  1 ccgcgccggaaaacactatctcgccggagaagatgatgatataagggggcgg 52  Q
    ||||||||||||||||| |||||||||||||||   ||||||||||||||||    
T  64683 ccgcgccggaaaacactgtctcgccggagaaga---tgatataagggggcgg 64635  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20622489 - 20622537
Alignment:
Q  1 ccgcgccggaaaacactatctcgccggagaagatgatgatataagggggcgg 52  Q
    |||||| ||||||||||||||||||||||||   ||||||||||||||||||    
T  20622489 ccgcgctggaaaacactatctcgccggagaa---gatgatataagggggcgg 20622537  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 17686389 - 17686342
Alignment:
Q  2 cgcgccggaaaacactatctcgccggagaagatgatgatataagggggcgg 52  Q
    |||||||||||||||| |||||||||||||||   ||||||||||||||||    
T  17686389 cgcgccggaaaacactgtctcgccggagaaga---tgatataagggggcgg 17686342  T

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Target: scaffold0497 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 11927 - 11959
Alignment:
Q  68 agagagaagtgagaacaattgtttagagagaga 100  Q
    |||||||||||||||||||||||||||||||||    
T  11927 agagagaagtgagaacaattgtttagagagaga 11959  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 47890 - 47854
Alignment:
Q  44 agggggcggctgtttgttttgttaagagagaagtgag 80  Q
    ||||||||||||||||||||||| |||||||||||||    
T  47890 agggggcggctgtttgttttgttgagagagaagtgag 47854  T

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Target: scaffold0703 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 6774 - 6739
Alignment:
Q  43 aagggggcggctgtttgttttgttaagagagaagtg 78  Q
    |||||||||||||||||||||||| |||||||||||    
T  6774 aagggggcggctgtttgttttgttgagagagaagtg 6739  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 9184861 - 9184831
Alignment:
Q  70 agagaagtgagaacaattgtttagagagaga 100  Q
    |||||||||||||||||||||||||||||||    
T  9184861 agagaagtgagaacaattgtttagagagaga 9184831  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 5995727 - 5995755
Alignment:
Q  5 gccggaaaacactatctcgccggagaaga 33  Q
    |||||||||||||||||||||||||||||    
T  5995727 gccggaaaacactatctcgccggagaaga 5995755  T

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