View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_low_40 (Length: 268)
Name: NF5706_low_40
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_40 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 49 - 268
Target Start/End: Complemental strand, 13277887 - 13277673
Alignment:
| Q |
49 |
tcatcatcatttcgttatacataccggagtatacaagaatcaacaattaccgaaaacaatcttttaataatgattgaattgaatcaaacaagtgttnnnn |
148 |
Q |
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| T |
13277887 |
tcatcatcatttcgttatacacagtggagtatacaaaaatcaacaattaccgaaaacaat--------agtgattgaattgaatcaaacaagtgttaaaa |
13277796 |
T |
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| Q |
149 |
nnnn---caagataaccatgctcttaaattgatactctccattttctatttctattcttcaatgcaatttgtgcaacaggataacaagtcctaaacttct |
245 |
Q |
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| T |
13277795 |
aaaaaaacaagataaccatgctcttaaattgatactctccattttctatttctattcttcaatgcaatttgtgcaacaggataacaagtcctaaacttct |
13277696 |
T |
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| Q |
246 |
caacccaaaatttcacatcctcc |
268 |
Q |
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| T |
13277695 |
caacccaaaatttcacatcctcc |
13277673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 74 - 267
Target Start/End: Original strand, 36808328 - 36808529
Alignment:
| Q |
74 |
ggagtatacaagaatcaacaattaccgaaaacaatcttttaataatgattgaattgaatcaaacaa-----gtgt--tnnnnnnnncaagataaccatg- |
165 |
Q |
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| T |
36808328 |
ggagtatacaagaatcaacaattacacagaacaatctttcaagagtgattgaattgaatcaaacaatagtggtgtagtaaaaaaaacaaaataaccatgg |
36808427 |
T |
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| Q |
166 |
ctcttaaattgatactctccattttctatttctattcttcaatgcaatttgtgcaacaggataacaagtcctaaacttctcaacccaaaatttcacatcc |
265 |
Q |
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| T |
36808428 |
ctctcattttgatactttccattttctatttctattcttcaatgcaatttgtgcaacaggagaacaagtcctaaacttctcaacccaaaatttcacatcc |
36808527 |
T |
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| Q |
266 |
tc |
267 |
Q |
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|| |
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| T |
36808528 |
tc |
36808529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 50880145 - 50880236
Alignment:
| Q |
49 |
tcatcatcatttcgttatacataccggagtatacaagaatcaacaattaccgaaaacaatcttttaataatgattgaattgaatcaaacaag |
140 |
Q |
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| T |
50880145 |
tcatcatcatttcgttatacacagtggagtatacaagaatcaacaattacataaaacaatcttttaacagtgattgaattgaatcaaacaag |
50880236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 48081205 - 48081114
Alignment:
| Q |
49 |
tcatcatcatttcgttatacataccggagtatacaagaatcaacaattaccgaaaacaatcttttaataatgattgaattgaatcaaacaag |
140 |
Q |
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|||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
48081205 |
tcatcatcattttgttatacacagtggagtatacaagaatcaacaattacagaaaacaatcttttaacggtgattgaattgaatcaaacaag |
48081114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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