View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_low_45 (Length: 259)
Name: NF5706_low_45
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 18803927 - 18804170
Alignment:
| Q |
1 |
ttacttgacgagtatggtggcttccacagcccctatattgtgtaagtattgtggcgaaatttttcaatcaagcaatacaaaatttatgatattgtttgat |
100 |
Q |
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| T |
18803927 |
ttacttgatgagtatggtggcttccacagcccctatattgtgtaagtattgcggcgaaatttttcaatcaagcaatacaaaatttatgatattgtttgat |
18804026 |
T |
|
| Q |
101 |
ccacgtagccaacccctcctactgacataaatttaattgtttaatttctacatgcagagatgatttcaagagctttgtcgaggtatgcttcgaggaattt |
200 |
Q |
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| T |
18804027 |
ccacgtagccaacccgtcctactgacataagtttaattgtttaatttctacatgcagagatgatttcaagagctttgtggaggtatgcttcgaggaattt |
18804126 |
T |
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| Q |
201 |
ggagacagagtaaagcattggattactcttaatgagccatactt |
244 |
Q |
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| T |
18804127 |
ggagacagagtaaatcattggattactcttaatgagccatactt |
18804170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 4600251 - 4600147
Alignment:
| Q |
136 |
attgtttaatttctacatgcagagatgatttcaagagctttgtcgaggtatgcttcgaggaatttggagacagagtaaagcattggattactcttaatga |
235 |
Q |
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| T |
4600251 |
attgtttaatttctacgtgcagaaatgattttaaggactttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttacttttaatga |
4600152 |
T |
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| Q |
236 |
gccat |
240 |
Q |
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| T |
4600151 |
gccat |
4600147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 4624499 - 4624395
Alignment:
| Q |
136 |
attgtttaatttctacatgcagagatgatttcaagagctttgtcgaggtatgcttcgaggaatttggagacagagtaaagcattggattactcttaatga |
235 |
Q |
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||||||||||||||| ||||||| | ||||| ||| |||||| || |||||||| |||||||||||||||| |||||||||||| ||||| ||||||| |
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| T |
4624499 |
attgtttaatttctatatgcagaaaagattttaaggactttgtggatatatgcttcaaggaatttggagacagtgtaaagcattgggttacttttaatga |
4624400 |
T |
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| Q |
236 |
gccat |
240 |
Q |
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||||| |
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| T |
4624399 |
gccat |
4624395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 25017689 - 25017642
Alignment:
| Q |
179 |
cgaggtatgcttcgaggaatttggagacagagtaaagcattggattac |
226 |
Q |
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|||| |||||||| |||||||||||||| |||| |||||||||||||| |
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| T |
25017689 |
cgagctatgcttcaaggaatttggagaccgagtgaagcattggattac |
25017642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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