View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5706_low_47 (Length: 253)
Name: NF5706_low_47
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_47 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 38809909 - 38810155
Alignment:
| Q |
8 |
ccaataatatctttaaactggtcacctgtcaaaaactatcttttccatgttataatatgcttgaatttgaatttgtaaattatgtcatatcctaaactta |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38809909 |
ccaacaatatctttaaactggtcacctgtcaaaaaatatctcttccatgttataatatgcttgaatttgaatttgtaaattatgtcatatcctaaactta |
38810008 |
T |
|
| Q |
108 |
ctacaagaaatcatattgataattttgttcacatagtataactttggtatatatttcaccaaaattttctgtctgtttaaattttgcttttaaat-atnn |
206 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38810009 |
ctacaagaaaacatattgataattttgttcacatagtataactttggtatatatttcaccaaaattttctgtctgtttaaattttgcttttaaataaaaa |
38810108 |
T |
|
| Q |
207 |
nnnnnnggtaaaaatgtataaccttgtttgtaaaagacagctaaacc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38810109 |
aaaaaaggtaaaaatgtataaccttgtttgtaaaagacagataaacc |
38810155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University