View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_low_49 (Length: 251)
Name: NF5706_low_49
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 4599830 - 4600040
Alignment:
| Q |
16 |
attgatcatattccaattgcagtataccctttttcacttcttaggttgacaagcagaaagactattgatcacattgaggtagaaatcccaagattcactt |
115 |
Q |
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| T |
4599830 |
attgatcatattccaattgcaagaaaccatttttcacttcttaggttgacaagtagaaagactattgatcacattgaggtagaaatcccaagcttcactt |
4599929 |
T |
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| Q |
116 |
ttttcagtgatacgttcttgaccgaatggatgttgttctacatacatcaacatattttcagcatttgccaatccttccacatatcgtcgcagatcgcctc |
215 |
Q |
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| T |
4599930 |
ttttcagtgatacgttcttgaccaaatggatgttgttctacatacatcaacatattttcagcatttgccaatccttccacatatcgtcgaagatcgcctc |
4600029 |
T |
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| Q |
216 |
caacagctgac |
226 |
Q |
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| T |
4600030 |
cagcagctgac |
4600040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 226
Target Start/End: Original strand, 4571872 - 4572050
Alignment:
| Q |
48 |
ttcacttcttaggttgacaagcagaaagactattgatcacattgaggtagaaatcccaagattcacttttttcagtgatacgttcttgaccgaatggatg |
147 |
Q |
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| T |
4571872 |
ttcacttttcaggttgacaagcagaaatactattgataacattgaggtaaaaatcccaaaattcatttgtttcagtgatccgttcttgaccaaatggatg |
4571971 |
T |
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| Q |
148 |
ttgttctacatacatcaacatattttcagcatttgccaatccttccacatatcgtcgcagatcgcctccaacagctgac |
226 |
Q |
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| T |
4571972 |
ttgttctacatacttcaccatattttcagcacttgccagtccttctagatattggcgtagatcgcctccggcagctgac |
4572050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 58 - 226
Target Start/End: Original strand, 4591190 - 4591358
Alignment:
| Q |
58 |
aggttgacaagcagaaagactattgatcacattgaggtagaaatcccaagattcacttttttcagtgatacgttcttgaccgaatggatgttgttctaca |
157 |
Q |
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| T |
4591190 |
aggttgacaaacagaaagactattgataacattgaggtagaagtcccaagattcatttgtttcagcgatacgttcttgaccaaatggatgttgttctaca |
4591289 |
T |
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| Q |
158 |
tacatcaacatattttcagcatttgccaatccttccacatatcgtcgcagatcgcctccaacagctgac |
226 |
Q |
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| T |
4591290 |
tacttcgacatattttcagcatttgccagtccatcaagatattgtcgtaaatcgccatcagcagctgac |
4591358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 213
Target Start/End: Original strand, 4583654 - 4583821
Alignment:
| Q |
46 |
ttttcacttcttaggttgacaagcagaaagactattgatcacattgaggtagaaatcccaagattcacttttttcagtgatacgttcttgaccgaatgga |
145 |
Q |
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||||| ||| |||| |||| ||||| |||||||| ||| ||||||| |||||| ||||||||||| || ||||||||||| |||||||||| |||||| |
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| T |
4583654 |
ttttctctttttagattgataagcataaagactaatgaaaacattgaagtagaagtcccaagattcgctggtttcagtgatatgttcttgaccaaatgga |
4583753 |
T |
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| Q |
146 |
tgttgttctacatacatcaacatattttcagcatttgccaatccttccacatatcgtcgcagatcgcc |
213 |
Q |
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| T |
4583754 |
tgttgttctacatacgtcttcatattttcagcagttgccagtccatccagatattgtcgtaaatcgcc |
4583821 |
T |
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