View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_low_5 (Length: 609)
Name: NF5706_low_5
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 19 - 581
Target Start/End: Complemental strand, 7498775 - 7498215
Alignment:
| Q |
19 |
ggagttgtattcaatgcctgtaaagtatttaagaaatgaagcctccaattccaagacagtgctatgtttcttttctgaaactgcatgcactataggtggt |
118 |
Q |
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| T |
7498775 |
ggagttgtattcaatgcctgtaaagtatttaagaaatgaagcctccaattccaagacagtgctatgtttcttttctgaaactgcatgcactataggtggt |
7498676 |
T |
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| Q |
119 |
gtctcagtcttgtttgtgattgcctcaatcaaatcctcaggcaccttcaaaagaaattgaaagtttagaacaaaataaatttaattttactcgagaatat |
218 |
Q |
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| T |
7498675 |
gtctcagtcttgtttgtgattgcctcaatcaaatcctccggcaccttcaaaagaaattgaaagtttagaacaaaataaatttaattttactcgagaatat |
7498576 |
T |
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| Q |
219 |
ccaaacatgtcaaaatcactcaacaattttggctcaaaatggaaccaactatacatttattgtttcacattgtgaatgaacatattatataccttaaaag |
318 |
Q |
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| T |
7498575 |
ccaaacatgtcaaaatcactcaacaattttgcctcaaaatggaaccaactatacattgattgtttcacattgtgaatgaacatattatataccttaaaag |
7498476 |
T |
|
| Q |
319 |
ctgcttggatgattttcttatcaaagcctttgactagttcattgattcttgagtaagcaccaattgatggatcctgcaatttttgttcaaacataaacaa |
418 |
Q |
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| T |
7498475 |
ctgcttggatgattttcttatcaaagcctttgactagttcattgattcttgagtaagcaccaattgatggatcctgcaatttttgtt--aacataaacaa |
7498378 |
T |
|
| Q |
419 |
ttgcaaacaaacaaggctttgaaacttcagtttaagaaaataatacaagtgcaagaagcttacaaatgtgctatcatcagtattggtaaacattgcataa |
518 |
Q |
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| T |
7498377 |
ttgcaaacaaacaaggctttgaaacttcagtttaagaaaataatacaagtgcaagaagcttacaaatgtgctatcatcagtattggtaaacattgcataa |
7498278 |
T |
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| Q |
519 |
attcttagtttcttcctttggtcatccaagttgttgtgtatatagaaaacagatccttctgtg |
581 |
Q |
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| T |
7498277 |
attcttagtttcttcctttggtcatccaagttgttgtgtatatagaaaacagatccttctgtg |
7498215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 24338586 - 24338549
Alignment:
| Q |
199 |
ttaattttactcgagaatatccaaacatgtcaaaatca |
236 |
Q |
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| T |
24338586 |
ttaattttactcgagaacatccaaacatgtcaaaatca |
24338549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 2171770 - 2171738
Alignment:
| Q |
201 |
aattttactcgagaatatccaaacatgtcaaaa |
233 |
Q |
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| T |
2171770 |
aattttactcgagaacatccaaacatgtcaaaa |
2171738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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