View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5706_low_50 (Length: 251)
Name: NF5706_low_50
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 21977612 - 21977395
Alignment:
| Q |
17 |
cagagagtagaaacagcaataatgaggcagcaactccttagcgcatcaagtaatcccgaggactccaactccactcatagaacatgcaactcggagttga |
116 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21977612 |
cagagactagaaacagcaataatgaggcagcagctccttagcgcatcaagcaatcccgaggactccaactccactcatagaacatgcaactcggagttga |
21977513 |
T |
|
| Q |
117 |
ggttctaccaataatccacctccaagacatcaccttcacctcttccacaatctcctcccacgttactatcacattattaaaaatgcattcattcctcact |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
21977512 |
ggttctaccaataatccacctccaagacatcaccttcacctcttccacaatctcctcccacattactatcacattattaaaaatgcgttcattcctcact |
21977413 |
T |
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| Q |
217 |
ttccaaatcacccatatg |
234 |
Q |
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|||||||||||||||||| |
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| T |
21977412 |
ttccaaatcacccatatg |
21977395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 4636663 - 4636768
Alignment:
| Q |
73 |
cgaggactccaactccactcatagaacatgcaactcggagttgaggttctaccaataatccacctccaagacatcaccttcacctcttccacaatctcct |
172 |
Q |
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||||||| ||||||||||||||| ||||||||| |||| ||| ||||||||| | |||||||||||| |||| |||||||||| | |||| | ||||| |
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| T |
4636663 |
cgaggacaccaactccactcataaaacatgcaagccggaattgtggttctaccgagaatccacctccacgacaacaccttcaccgcctccattaactcct |
4636762 |
T |
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| Q |
173 |
cccacg |
178 |
Q |
| |
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|||||| |
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| T |
4636763 |
cccacg |
4636768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 194
Target Start/End: Complemental strand, 1160786 - 1160660
Alignment:
| Q |
68 |
aatcccgaggactccaactccactcatagaacatgcaactcggagttgaggttctaccaataatccacctccaagacatcaccttcacctcttccacaat |
167 |
Q |
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||||||| |||||||||||||||||||| ||||| || |||||||| ||||| | || ||||||||||||| ||| ||||||||||| ||||| | |
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| T |
1160786 |
aatcccgcggactccaactccactcataaaacatacacgccggagttgtggttcggctaagcatccacctccaagtcattaccttcacctcctccacgag |
1160687 |
T |
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| Q |
168 |
ctcctcccacgttactatcacattatt |
194 |
Q |
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||| ||||| ||||| || |||||||| |
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| T |
1160686 |
ctcttcccaagttacaatgacattatt |
1160660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 52612732 - 52612832
Alignment:
| Q |
76 |
ggactccaactccactcatagaacatgcaactcggagttgaggttctaccaataatccacctccaagacatcaccttcacctcttccacaatctcctccc |
175 |
Q |
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|||| ||||||||||||||| ||||| ||| ||| ||||| | |||||||| | ||||||||| |||| ||| ||||||| ||||||| ||| |||| |
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| T |
52612732 |
ggacaccaactccactcataaaacatacaagccggtgttgaagatctaccaagtaaccacctccatgacaacactttcaccttctccacaagctcatccc |
52612831 |
T |
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| Q |
176 |
a |
176 |
Q |
| |
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| |
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|
| T |
52612832 |
a |
52612832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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