View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5706_low_56 (Length: 242)
Name: NF5706_low_56
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5706_low_56 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 41 - 227
Target Start/End: Original strand, 14347943 - 14348128
Alignment:
| Q |
41 |
gttaatttcttgctgaaagattatgaatgctaactttacctgctcaacaagtattttcctttcttcttttttcttgttcaatatgattatttcttttcct |
140 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14347943 |
gttaatttcttgctgaatgattatgaatgctaactttaccttctcaacaagtattttgctttcttcttttttcttgttcaatatgattctttcttttcct |
14348042 |
T |
|
| Q |
141 |
atatgatacataaagtgtcaaatgggttcatacatatgtaaattatcttacaattggactctttaattgatgattttgccaaagaat |
227 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
14348043 |
atatgatacat-aagtgtcaaatgggttcatacatatgtaaattatcttacaattggactctttaattaaagattttgccaaagaat |
14348128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 4506599 - 4506657
Alignment:
| Q |
152 |
aaagtgtcaaatgggttcatacatatgtaaattatcttacaattggactctttaattga |
210 |
Q |
| |
|
||||||||||| || || ||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
4506599 |
aaagtgtcaaaaggatttctacatatataaattattttacaattggactctttaattga |
4506657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 15066865 - 15066797
Alignment:
| Q |
141 |
atatgatacataaagtgtcaaatgggttcatacatatgtaaattatcttacaattggactctttaattga |
210 |
Q |
| |
|
|||||||||| || || ||||||||||| ||||||| |||||||| |||||||||||||||| |||||| |
|
|
| T |
15066865 |
atatgataca-aatgtatcaaatgggtttctacatatataaattattttacaattggactcttgaattga |
15066797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 15214575 - 15214639
Alignment:
| Q |
141 |
atatgatacataaagtgtcaaatgggttcatacatatgtaaattatcttacaattggactctttaa |
206 |
Q |
| |
|
|||||||||| || || ||||||||||| ||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
15214575 |
atatgataca-aatgtatcaaatgggtttctacatatataaattattttacaattggactctttaa |
15214639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 15751277 - 15751232
Alignment:
| Q |
153 |
aagtgtcaaatgggttcatacatatgtaaattatcttacaattgga |
198 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||||||||||||||| |
|
|
| T |
15751277 |
aagtgtcaaaagggttcctgcatatgtaaattatcttacaattgga |
15751232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 15052650 - 15052602
Alignment:
| Q |
158 |
tcaaatgggttcatacatatgtaaattatcttacaattggactctttaa |
206 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
15052650 |
tcaaatgggtttctacatatataaattattttacaattggactctttaa |
15052602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 15000278 - 15000220
Alignment:
| Q |
152 |
aaagtgtcaaatgggttcatacatatgtaaattatcttacaattggactctttaattga |
210 |
Q |
| |
|
|||||||||| ||| ||| ||||||| ||||| |||||||||||||| || |||||||| |
|
|
| T |
15000278 |
aaagtgtcaagtggattcctacatatataaatgatcttacaattggattccttaattga |
15000220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 1626774 - 1626829
Alignment:
| Q |
152 |
aaagtgtcaaatgggttcatacatatgtaaattatcttacaattggactctttaat |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1626774 |
aaagtgtcaaatgggttcctacatatgtaaattatcttacaattggactctttaat |
1626829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 1618209 - 1618267
Alignment:
| Q |
152 |
aaagtgtcaaatgggttcatacatatgtaaattatcttacaattggactctttaattga |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1618209 |
aaagtgtcaaatgggtttctacatatgtaaattatcttacaattggattctttaattga |
1618267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University